Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:3510923-4050929

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hspa14 2 3488850 to 3512814 23964 - protein coding gene heat shock protein 14
Gm45902 2 3504527 to 3512790 8263 - protein coding gene predicted gene 45902
Tssr22372 2 3511212 to 3511243 31 - TSS region transcription start site region 22372
Cpgi11154 2 3512161 to 3513402 1241 CpG island CpG island 11154
Tssr22373 2 3512746 to 3512782 36 - TSS region transcription start site region 22373
Tssr22374 2 3512929 to 3512970 41 - TSS region transcription start site region 22374
Cdnf 2 3513030 to 3526376 13346 + protein coding gene cerebral dopamine neurotrophic factor
Tssr15898 2 3513035 to 3513074 39 + TSS region transcription start site region 15898
Tssr15899 2 3513092 to 3513127 35 + TSS region transcription start site region 15899
Tssr22375 2 3517790 to 3517796 6 - TSS region transcription start site region 22375
Gm13186 2 3531285 to 3531600 315 + pseudogene predicted gene 13186
Gm13182 2 3550757 to 3551068 311 + pseudogene predicted gene 13182
Tssr15900 2 3636894 to 3636901 7 + TSS region transcription start site region 15900
Tssr22376 2 3649271 to 3649286 15 - TSS region transcription start site region 22376
Tssr15901 2 3649507 to 3649517 10 + TSS region transcription start site region 15901
Tssr15902 2 3664530 to 3664538 8 + TSS region transcription start site region 15902
Gm13183 2 3679802 to 3680590 788 - pseudogene predicted gene 13183
Tssr15903 2 3686322 to 3686356 34 + TSS region transcription start site region 15903
Gm13181 2 3686362 to 3687430 1068 + pseudogene predicted gene 13181
Tssr15904 2 3704787 to 3704798 11 + TSS region transcription start site region 15904
Fam107b 2 3704812 to 3782142 77330 + protein coding gene family with sequence similarity 107, member B
Cpgi11155 2 3713202 to 3714203 1001 CpG island CpG island 11155
Tssr22377 2 3713315 to 3713350 35 - TSS region transcription start site region 22377
Tssr15905 2 3713440 to 3713443 3 + TSS region transcription start site region 15905
Tssr15906 2 3713449 to 3713474 25 + TSS region transcription start site region 15906
Tssr15907 2 3713479 to 3713500 21 + TSS region transcription start site region 15907
Tssr15908 2 3713517 to 3713528 11 + TSS region transcription start site region 15908
Tssr22378 2 3715579 to 3715598 19 - TSS region transcription start site region 22378
Tssr22379 2 3718095 to 3718108 13 - TSS region transcription start site region 22379
Tssr15909 2 3723197 to 3723202 5 + TSS region transcription start site region 15909
Tssr15910 2 3723752 to 3723798 46 + TSS region transcription start site region 15910
Tssr22380 2 3726720 to 3726748 28 - TSS region transcription start site region 22380
Tssr22381 2 3726787 to 3726808 21 - TSS region transcription start site region 22381
Tssr15911 2 3727174 to 3727185 11 + TSS region transcription start site region 15911
Tssr15912 2 3730957 to 3730996 39 + TSS region transcription start site region 15912
Tssr15913 2 3731062 to 3731067 5 + TSS region transcription start site region 15913
Tssr22382 2 3731318 to 3731327 9 - TSS region transcription start site region 22382
Tssr15914 2 3733067 to 3733075 8 + TSS region transcription start site region 15914
Tssr15915 2 3749249 to 3749260 11 + TSS region transcription start site region 15915
Tssr15916 2 3749273 to 3749290 17 + TSS region transcription start site region 15916
Tssr15917 2 3749302 to 3749320 18 + TSS region transcription start site region 15917
Tssr15918 2 3749326 to 3749364 38 + TSS region transcription start site region 15918
Tssr15919 2 3749948 to 3749952 4 + TSS region transcription start site region 15919
Gm13185 2 3752986 to 3755177 2191 - antisense lncRNA gene predicted gene 13185
Tssr15920 2 3770639 to 3770664 25 + TSS region transcription start site region 15920
Tssr15921 2 3770673 to 3770682 9 + TSS region transcription start site region 15921
D2Mit356b 2 3778683 to 3778795 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356b
D2Mit356a 2 3778683 to 3778728 45 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356a
Tssr388 2 3779887 to 3779917 30 + TSS region transcription start site region 388
Tssr15922 2 3779922 to 3779938 16 + TSS region transcription start site region 15922
Tssr15923 2 3780090 to 3780114 24 + TSS region transcription start site region 15923
Tssr15924 2 3780923 to 3780929 6 + TSS region transcription start site region 15924
Tssr389 2 3781828 to 3781832 4 + TSS region transcription start site region 389
Gm36031 2 3807845 to 3824328 16483 + lncRNA gene predicted gene, 36031
Tssr15925 2 3810195 to 3810210 15 + TSS region transcription start site region 15925
Gm13180 2 3855030 to 3877575 22545 + lincRNA gene predicted gene 13180
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
D2Mit1 2 3886089 to 3886211 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1
Gm13191 2 3925808 to 3929139 3331 - lincRNA gene predicted gene 13191
D2Mit115 2 3928829 to 3928983 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 115
D2Mit231 2 3932099 to 3932248 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 231
Tssr390 2 4017685 to 4017696 11 + TSS region transcription start site region 390
Tssr15926 2 4017706 to 4017722 16 + TSS region transcription start site region 15926
Frmd4a 2 4017717 to 4614043 596326 + protein coding gene FERM domain containing 4A
Tssr15927 2 4017727 to 4017745 18 + TSS region transcription start site region 15927
Tssr15928 2 4017757 to 4017768 11 + TSS region transcription start site region 15928