Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:35052829-36112851

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hc 2 34983331 to 35061438 78107 - protein coding gene hemolytic complement
Stia2 2 34983331 to 35061438 78107 QTL serum transfer induced arthritis 2
Rmp5 2 34983331 to 35061438 78107 QTL resistance to mousepox 5
Tssr23685 2 35061403 to 35061419 16 - TSS region transcription start site region 23685
Tssr23686 2 35061421 to 35061429 8 - TSS region transcription start site region 23686
Tssr23687 2 35061431 to 35061447 16 - TSS region transcription start site region 23687
Gm39794 2 35063521 to 35068478 4957 + lncRNA gene predicted gene, 39794
Tssr17452 2 35066832 to 35066843 11 + TSS region transcription start site region 17452
Tssr23688 2 35067014 to 35067030 16 - TSS region transcription start site region 23688
Tssr23689 2 35069265 to 35069281 16 - TSS region transcription start site region 23689
AI182371 2 35081861 to 35100696 18835 - protein coding gene expressed sequence AI182371
Tssr23690 2 35100652 to 35100665 13 - TSS region transcription start site region 23690
Tssr23691 2 35100677 to 35100692 15 - TSS region transcription start site region 23691
Gm46734 2 35100778 to 35104380 3602 + lncRNA gene predicted gene, 46734
Tssr23692 2 35101197 to 35101222 25 - TSS region transcription start site region 23692
Tssr23693 2 35101542 to 35101548 6 - TSS region transcription start site region 23693
Cpgi11564 2 35109127 to 35110090 963 CpG island CpG island 11564
Tssr17453 2 35109482 to 35109538 56 + TSS region transcription start site region 17453
Cntrl 2 35109492 to 35178822 69330 + protein coding gene centriolin
Tssr17454 2 35132166 to 35132189 23 + TSS region transcription start site region 17454
Tssr17455 2 35132194 to 35132247 53 + TSS region transcription start site region 17455
Cpgi11565 2 35132300 to 35132615 315 CpG island CpG island 11565
Rab14 2 35180205 to 35201120 20915 - protein coding gene RAB14, member RAS oncogene family
Tssr23694 2 35181680 to 35181717 37 - TSS region transcription start site region 23694
Tssr23695 2 35182294 to 35182325 31 - TSS region transcription start site region 23695
Cpgi11566 2 35199910 to 35201453 1543 CpG island CpG island 11566
Tssr23696 2 35200796 to 35200825 29 - TSS region transcription start site region 23696
Tssr23697 2 35200923 to 35201069 146 - TSS region transcription start site region 23697
Cpgi11567 2 35224457 to 35224654 197 CpG island CpG island 11567
Tssr17456 2 35224516 to 35224548 32 + TSS region transcription start site region 17456
Gm13605 2 35224533 to 35226685 2152 + lincRNA gene predicted gene 13605
Cpgi11568 2 35256084 to 35256841 757 CpG island CpG island 11568
Tssr17457 2 35256365 to 35256448 83 + TSS region transcription start site region 17457
Gsn 2 35256380 to 35307892 51512 + protein coding gene gelsolin
Tssr17458 2 35259653 to 35259657 4 + TSS region transcription start site region 17458
Gm39796 2 35262665 to 35266812 4147 - lncRNA gene predicted gene, 39796
Tssr17459 2 35266764 to 35266845 81 + TSS region transcription start site region 17459
Gm39795 2 35267662 to 35280451 12789 - lncRNA gene predicted gene, 39795
Gm43128 2 35280390 to 35282010 1620 + unclassified gene predicted gene 43128
Cpgi11569 2 35282260 to 35282616 356 CpG island CpG island 11569
Tssr17460 2 35282299 to 35282318 19 + TSS region transcription start site region 17460
Tssr17461 2 35282321 to 35282329 8 + TSS region transcription start site region 17461
Tssr17462 2 35282427 to 35282442 15 + TSS region transcription start site region 17462
Tssr17463 2 35283992 to 35284014 22 + TSS region transcription start site region 17463
Tssr17464 2 35284698 to 35284709 11 + TSS region transcription start site region 17464
Tssr17465 2 35284771 to 35284787 16 + TSS region transcription start site region 17465
Tssr17466 2 35292627 to 35292639 12 + TSS region transcription start site region 17466
Tssr17467 2 35292654 to 35292686 32 + TSS region transcription start site region 17467
Tssr23698 2 35303266 to 35303272 6 - TSS region transcription start site region 23698
Stom 2 35313986 to 35336976 22990 - protein coding gene stomatin
Tssr23699 2 35315222 to 35315248 26 - TSS region transcription start site region 23699
Tssr23700 2 35315273 to 35315285 12 - TSS region transcription start site region 23700
Tssr23701 2 35315426 to 35315448 22 - TSS region transcription start site region 23701
Tssr23702 2 35315495 to 35315506 11 - TSS region transcription start site region 23702
Tssr23703 2 35315637 to 35315648 11 - TSS region transcription start site region 23703
Tssr17468 2 35331070 to 35331073 3 + TSS region transcription start site region 17468
Cpgi11570 2 35336495 to 35337272 777 CpG island CpG island 11570
Tssr23704 2 35336969 to 35336983 14 - TSS region transcription start site region 23704
Tssr23705 2 35337003 to 35337017 14 - TSS region transcription start site region 23705
Tssr17469 2 35340337 to 35340366 29 + TSS region transcription start site region 17469
Gm13443 2 35340409 to 35340963 554 + pseudogene predicted gene 13443
Tssr479 2 35341560 to 35341565 5 + TSS region transcription start site region 479
4930568D16Rik 2 35354218 to 35367729 13511 - protein coding gene RIKEN cDNA 4930568D16 gene
Tssr23706 2 35367716 to 35367726 10 - TSS region transcription start site region 23706
Tssr23707 2 35367730 to 35367737 7 - TSS region transcription start site region 23707
4930402F06Rik 2 35375562 to 35397174 21612 - protein coding gene RIKEN cDNA 4930402F06 gene
Gm39797 2 35376280 to 35387709 11429 + lncRNA gene predicted gene, 39797
Tssr23708 2 35397174 to 35397208 34 - TSS region transcription start site region 23708
Ggta1 2 35400179 to 35463231 63052 - protein coding gene glycoprotein galactosyltransferase alpha 1, 3
Tssr23709 2 35402376 to 35402391 15 - TSS region transcription start site region 23709
D2Mit515 2 35406491 to 35406607 116 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-515
Tssr17470 2 35426545 to 35426549 4 + TSS region transcription start site region 17470
Tssr23710 2 35432552 to 35432623 71 - TSS region transcription start site region 23710
Tssr23711 2 35432781 to 35432797 16 - TSS region transcription start site region 23711
Tssr23712 2 35432825 to 35432836 11 - TSS region transcription start site region 23712
Tssr23713 2 35432901 to 35432910 9 - TSS region transcription start site region 23713
Gm43761 2 35436321 to 35437311 990 - unclassified gene predicted gene 43761
Tssr23714 2 35442089 to 35442123 34 - TSS region transcription start site region 23714
Tssr23715 2 35442129 to 35442149 20 - TSS region transcription start site region 23715
Tssr23716 2 35442154 to 35442180 26 - TSS region transcription start site region 23716
Tssr17471 2 35444700 to 35444721 21 + TSS region transcription start site region 17471
Tssr23717 2 35457845 to 35457866 21 - TSS region transcription start site region 23717
Tssr23718 2 35461247 to 35461271 24 - TSS region transcription start site region 23718
Tssr23719 2 35461272 to 35461291 19 - TSS region transcription start site region 23719
Tssr23720 2 35461365 to 35461413 48 - TSS region transcription start site region 23720
Tssr17472 2 35461502 to 35461516 14 + TSS region transcription start site region 17472
Cpgi11571 2 35461927 to 35462697 770 CpG island CpG island 11571
Tssr23721 2 35462454 to 35462503 49 - TSS region transcription start site region 23721
Tssr23722 2 35462519 to 35462574 55 - TSS region transcription start site region 23722
Tssr23723 2 35462718 to 35462721 3 - TSS region transcription start site region 23723
Tssr23724 2 35462793 to 35462832 39 - TSS region transcription start site region 23724
Tssr23725 2 35463499 to 35463528 29 - TSS region transcription start site region 23725
Gm13444 2 35483384 to 35483905 521 - pseudogene predicted gene 13444
Cpgi11572 2 35491149 to 35491628 479 CpG island CpG island 11572
Gm13445 2 35491213 to 35491519 306 - pseudogene predicted gene 13445
Gm35260 2 35492024 to 35504928 12904 - lncRNA gene predicted gene, 35260
Tssr480 2 35496200 to 35496212 12 + TSS region transcription start site region 480
Tssr17473 2 35503517 to 35503536 19 + TSS region transcription start site region 17473
Gm35202 2 35503531 to 35506090 2559 + lincRNA gene predicted gene, 35202
Tssr23726 2 35504333 to 35504337 4 - TSS region transcription start site region 23726
D2Mit122 2 35529099 to 35529243 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 122
Cpgi11573 2 35544958 to 35545124 166 CpG island CpG island 11573
Gm13446 2 35549538 to 35558702 9164 - lncRNA gene predicted gene 13446
Tssr17474 2 35558452 to 35558487 35 + TSS region transcription start site region 17474
Dab2ip 2 35558458 to 35730994 172536 + protein coding gene disabled 2 interacting protein
Tssr17475 2 35562746 to 35562750 4 + TSS region transcription start site region 17475
Tssr17476 2 35562758 to 35562771 13 + TSS region transcription start site region 17476
Cpgi11574 2 35581438 to 35583196 1758 CpG island CpG island 11574
Tssr17477 2 35581602 to 35581651 49 + TSS region transcription start site region 17477
Tssr17478 2 35582829 to 35582851 22 + TSS region transcription start site region 17478
D2Mit319 2 35583402 to 35583507 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 319
Cpgi11575 2 35621526 to 35622445 919 CpG island CpG island 11575
Tssr17479 2 35621999 to 35622004 5 + TSS region transcription start site region 17479
Tssr17480 2 35622010 to 35622063 53 + TSS region transcription start site region 17480
Tssr17481 2 35622198 to 35622200 2 + TSS region transcription start site region 17481
Cpgi11576 2 35660659 to 35662602 1943 CpG island CpG island 11576
Tssr17482 2 35661268 to 35661290 22 + TSS region transcription start site region 17482
Tssr17483 2 35661296 to 35661369 73 + TSS region transcription start site region 17483
Tssr17484 2 35661485 to 35661518 33 + TSS region transcription start site region 17484
Tssr17485 2 35663636 to 35663651 15 + TSS region transcription start site region 17485
Tssr17486 2 35680567 to 35680572 5 + TSS region transcription start site region 17486
Tssr17487 2 35691893 to 35691953 60 + TSS region transcription start site region 17487
Tssr17488 2 35713174 to 35713183 9 + TSS region transcription start site region 17488
Cpgi11577 2 35720302 to 35720529 227 CpG island CpG island 11577
Tssr17489 2 35736318 to 35736334 16 + TSS region transcription start site region 17489
Ttll11 2 35751226 to 35979624 228398 - protein coding gene tubulin tyrosine ligase-like family, member 11
Gm43760 2 35762865 to 35765879 3014 - unclassified gene predicted gene 43760
D2Mit467 2 35814271 to 35814371 100 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 467
D2Mit85 2 35814920 to 35815022 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 85
9030204H09Rik 2 35819190 to 35823385 4195 + antisense lncRNA gene RIKEN cDNA 9030204H09 gene
Gm10829 2 35844195 to 35847182 2987 + lncRNA gene predicted gene 10829
Tssr23727 2 35874677 to 35874689 12 - TSS region transcription start site region 23727
Gm35396 2 35882598 to 35930556 47958 + lncRNA gene predicted gene, 35396
Tssr23728 2 35882698 to 35882712 14 - TSS region transcription start site region 23728
Tssr17490 2 35883628 to 35883651 23 + TSS region transcription start site region 17490
Tssr481 2 35964929 to 35964930 1 + TSS region transcription start site region 481
Tssr17491 2 35978726 to 35978742 16 + TSS region transcription start site region 17491
Tssr17492 2 35978843 to 35978861 18 + TSS region transcription start site region 17492
Cpgi11578 2 35978981 to 35980151 1170 CpG island CpG island 11578
Tssr17493 2 35979322 to 35979363 41 + TSS region transcription start site region 17493
Tssr17494 2 35979387 to 35979404 17 + TSS region transcription start site region 17494
Tssr23729 2 35979756 to 35979800 44 - TSS region transcription start site region 23729
Tssr23730 2 35979809 to 35979825 16 - TSS region transcription start site region 23730
Tssr23731 2 35979837 to 35979859 22 - TSS region transcription start site region 23731
4930564I24Rik 2 35979928 to 35980241 313 unclassified gene RIKEN cDNA 4930564I24 gene
D2Mit86 2 35996175 to 35996317 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 86
Cpgi11579 2 36011218 to 36011884 666 CpG island CpG island 11579
Cpgi11580 2 36021648 to 36022186 538 CpG island CpG island 11580
Gm39798 2 36027558 to 36030952 3394 - lncRNA gene predicted gene, 39798
Ndufa8 2 36036334 to 36049292 12958 - protein coding gene NADH:ubiquinone oxidoreductase subunit A8
Cpgi11581 2 36048899 to 36049586 687 CpG island CpG island 11581
Tssr23732 2 36049277 to 36049357 80 - TSS region transcription start site region 23732
Tssr23733 2 36049365 to 36049376 11 - TSS region transcription start site region 23733
Tssr17495 2 36049366 to 36049412 46 + TSS region transcription start site region 17495
Tssr17496 2 36049453 to 36049507 54 + TSS region transcription start site region 17496
Morn5 2 36049473 to 36079709 30236 + protein coding gene MORN repeat containing 5
Gm43764 2 36066118 to 36069289 3171 - unclassified gene predicted gene 43764
Lhx6 2 36081953 to 36105408 23455 - protein coding gene LIM homeobox protein 6
Gm27953 2 36087356 to 36087498 142 - unclassified non-coding RNA gene predicted gene, 27953
Cpgi11582 2 36090914 to 36091853 939 CpG island CpG island 11582
Tssr23734 2 36091395 to 36091410 15 - TSS region transcription start site region 23734
Cpgi11583 2 36093984 to 36094522 538 CpG island CpG island 11583
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
D2Mit372 2 36101667 to 36101785 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 372
Cpgi11584 2 36102059 to 36104088 2029 CpG island CpG island 11584
Tssr23735 2 36104021 to 36104028 7 - TSS region transcription start site region 23735
Tssr23736 2 36104067 to 36104073 6 - TSS region transcription start site region 23736
Cpgi11585 2 36104569 to 36105824 1255 CpG island CpG island 11585
Tssr23737 2 36104807 to 36104818 11 - TSS region transcription start site region 23737
Tssr23738 2 36105399 to 36105434 35 - TSS region transcription start site region 23738