Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:34786542-35416548

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rabepk 2 34777556 to 34799912 22356 - protein coding gene Rab9 effector protein with kelch motifs
Tssr23650 2 34790331 to 34790356 25 - TSS region transcription start site region 23650
Cpgi11557 2 34799493 to 34799964 471 CpG island CpG island 11557
Tssr23651 2 34799711 to 34799726 15 - TSS region transcription start site region 23651
Tssr23652 2 34799767 to 34799826 59 - TSS region transcription start site region 23652
Tssr23653 2 34799832 to 34799884 52 - TSS region transcription start site region 23653
2700071L08Rik 2 34801652 to 34802800 1148 unclassified non-coding RNA gene RIKEN cDNA 2700071L08 gene
Cpgi11558 2 34802135 to 34802690 555 CpG island CpG island 11558
4930550L05Rik 2 34802317 to 34811905 9588 unclassified gene RIKEN cDNA 4930550L05 gene
Tssr17430 2 34802336 to 34802391 55 + TSS region transcription start site region 17430
Fbxw2 2 34804514 to 34826311 21797 - protein coding gene F-box and WD-40 domain protein 2
Tssr23654 2 34807675 to 34807676 1 - TSS region transcription start site region 23654
Tssr23655 2 34821618 to 34821630 12 - TSS region transcription start site region 23655
Cpgi11559 2 34825854 to 34826419 565 CpG island CpG island 11559
Tssr23656 2 34826076 to 34826087 11 - TSS region transcription start site region 23656
Tssr23657 2 34826160 to 34826181 21 - TSS region transcription start site region 23657
Tssr23658 2 34826187 to 34826240 53 - TSS region transcription start site region 23658
Tssr17431 2 34826278 to 34826299 21 + TSS region transcription start site region 17431
Gm13419 2 34830840 to 34831110 270 + pseudogene predicted gene 13419
Gm34653 2 34833007 to 34839728 6721 + protein coding gene predicted gene, 34653
Tssr23659 2 34851557 to 34851565 8 - TSS region transcription start site region 23659
Psmd5 2 34852087 to 34870962 18875 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
Tssr23660 2 34862044 to 34862055 11 - TSS region transcription start site region 23660
5730407M17Rik 2 34870395 to 34872449 2054 unclassified gene RIKEN cDNA 5730407M17 gene
Cpgi11560 2 34870575 to 34871463 888 CpG island CpG island 11560
Tssr23661 2 34870921 to 34870980 59 - TSS region transcription start site region 23661
Tssr17432 2 34871089 to 34871113 24 + TSS region transcription start site region 17432
Cutal 2 34874396 to 34892132 17736 + protein coding gene cutA divalent cation tolerance homolog-like
Tssr17433 2 34874412 to 34874481 69 + TSS region transcription start site region 17433
Tssr17434 2 34874486 to 34874515 29 + TSS region transcription start site region 17434
Tssr17435 2 34879442 to 34879446 4 + TSS region transcription start site region 17435
Phf19 2 34893757 to 34914026 20269 - protein coding gene PHD finger protein 19
Cpgi11561 2 34904879 to 34905633 754 CpG island CpG island 11561
Gm13448 2 34912871 to 34916014 3143 + unclassified non-coding RNA gene predicted gene 13448
Cpgi11562 2 34913088 to 34914636 1548 CpG island CpG island 11562
Tssr474 2 34913530 to 34913537 7 + TSS region transcription start site region 474
Tssr23662 2 34914020 to 34914043 23 - TSS region transcription start site region 23662
Tssr17436 2 34914321 to 34914338 17 + TSS region transcription start site region 17436
Gm24905 2 34916250 to 34916353 103 + snRNA gene predicted gene, 24905
Tssr23663 2 34940037 to 34940072 35 - TSS region transcription start site region 23663
Tssr23664 2 34940145 to 34940159 14 - TSS region transcription start site region 23664
Traf1 2 34941750 to 34961772 20022 - protein coding gene TNF receptor-associated factor 1
Tssr23665 2 34944508 to 34944530 22 - TSS region transcription start site region 23665
Tssr23666 2 34953477 to 34953507 30 - TSS region transcription start site region 23666
Tssr475 2 34957175 to 34957177 2 + TSS region transcription start site region 475
Tssr23667 2 34958078 to 34958088 10 - TSS region transcription start site region 23667
Tssr23668 2 34958102 to 34958113 11 - TSS region transcription start site region 23668
Tssr23669 2 34958129 to 34958141 12 - TSS region transcription start site region 23669
Tssr23670 2 34958152 to 34958173 21 - TSS region transcription start site region 23670
Tssr476 2 34958310 to 34958317 7 + TSS region transcription start site region 476
Tssr17437 2 34958318 to 34958335 17 + TSS region transcription start site region 17437
Tssr17438 2 34958350 to 34958355 5 + TSS region transcription start site region 17438
Tssr23671 2 34958607 to 34958632 25 - TSS region transcription start site region 23671
Tssr23672 2 34958712 to 34958743 31 - TSS region transcription start site region 23672
Tssr17439 2 34958855 to 34958869 14 + TSS region transcription start site region 17439
Tssr17440 2 34961002 to 34961028 26 + TSS region transcription start site region 17440
Cpgi11563 2 34961359 to 34961695 336 CpG island CpG island 11563
Tssr17441 2 34961401 to 34961417 16 + TSS region transcription start site region 17441
Tssr23673 2 34961555 to 34961639 84 - TSS region transcription start site region 23673
Tssr17442 2 34961683 to 34961698 15 + TSS region transcription start site region 17442
Tssr17443 2 34961702 to 34961717 15 + TSS region transcription start site region 17443
Tssr17444 2 34961719 to 34961752 33 + TSS region transcription start site region 17444
Tssr23674 2 34961751 to 34961788 37 - TSS region transcription start site region 23674
Tssr23675 2 34961789 to 34961796 7 - TSS region transcription start site region 23675
Tssr23676 2 34961802 to 34961818 16 - TSS region transcription start site region 23676
Tssr23677 2 34961820 to 34961838 18 - TSS region transcription start site region 23677
Tssr17445 2 34961884 to 34961896 12 + TSS region transcription start site region 17445
Tssr23678 2 34961953 to 34961969 16 - TSS region transcription start site region 23678
Gm46733 2 34962703 to 34963305 602 + lncRNA gene predicted gene, 46733
Tssr23679 2 34962927 to 34962954 27 - TSS region transcription start site region 23679
Tssr23680 2 34962981 to 34962991 10 - TSS region transcription start site region 23680
Tssr477 2 34963162 to 34963167 5 + TSS region transcription start site region 477
Tssr17446 2 34963170 to 34963202 32 + TSS region transcription start site region 17446
Tssr17447 2 34963206 to 34963215 9 + TSS region transcription start site region 17447
Tssr17448 2 34963694 to 34963709 15 + TSS region transcription start site region 17448
Tssr17449 2 34963713 to 34963722 9 + TSS region transcription start site region 17449
Tssr23681 2 34963744 to 34963751 7 - TSS region transcription start site region 23681
Tssr17450 2 34963870 to 34963886 16 + TSS region transcription start site region 17450
Gm13450 2 34964738 to 34964904 166 - pseudogene predicted gene 13450
Tssr478 2 34976658 to 34976674 16 + TSS region transcription start site region 478
Tssr17451 2 34976697 to 34976708 11 + TSS region transcription start site region 17451
Rmp5 2 34983331 to 35061438 78107 QTL resistance to mousepox 5
Hc 2 34983331 to 35061438 78107 - protein coding gene hemolytic complement
Stia2 2 34983331 to 35061438 78107 QTL serum transfer induced arthritis 2
Gm13449 2 34993973 to 35013446 19473 + antisense lncRNA gene predicted gene 13449
Tssr23682 2 35013671 to 35013673 2 - TSS region transcription start site region 23682
Tssr23683 2 35030376 to 35030381 5 - TSS region transcription start site region 23683
Tssr23684 2 35035997 to 35036013 16 - TSS region transcription start site region 23684
Tssr23685 2 35061403 to 35061419 16 - TSS region transcription start site region 23685
Tssr23686 2 35061421 to 35061429 8 - TSS region transcription start site region 23686
Tssr23687 2 35061431 to 35061447 16 - TSS region transcription start site region 23687
Gm39794 2 35063521 to 35068478 4957 + lncRNA gene predicted gene, 39794
Tssr17452 2 35066832 to 35066843 11 + TSS region transcription start site region 17452
Tssr23688 2 35067014 to 35067030 16 - TSS region transcription start site region 23688
Tssr23689 2 35069265 to 35069281 16 - TSS region transcription start site region 23689
AI182371 2 35081861 to 35100696 18835 - protein coding gene expressed sequence AI182371
Tssr23690 2 35100652 to 35100665 13 - TSS region transcription start site region 23690
Tssr23691 2 35100677 to 35100692 15 - TSS region transcription start site region 23691
Gm46734 2 35100778 to 35104380 3602 + lncRNA gene predicted gene, 46734
Tssr23692 2 35101197 to 35101222 25 - TSS region transcription start site region 23692
Tssr23693 2 35101542 to 35101548 6 - TSS region transcription start site region 23693
Cpgi11564 2 35109127 to 35110090 963 CpG island CpG island 11564
Tssr17453 2 35109482 to 35109538 56 + TSS region transcription start site region 17453
Cntrl 2 35109492 to 35178822 69330 + protein coding gene centriolin
Tssr17454 2 35132166 to 35132189 23 + TSS region transcription start site region 17454
Tssr17455 2 35132194 to 35132247 53 + TSS region transcription start site region 17455
Cpgi11565 2 35132300 to 35132615 315 CpG island CpG island 11565
Rab14 2 35180205 to 35201120 20915 - protein coding gene RAB14, member RAS oncogene family
Tssr23694 2 35181680 to 35181717 37 - TSS region transcription start site region 23694
Tssr23695 2 35182294 to 35182325 31 - TSS region transcription start site region 23695
Cpgi11566 2 35199910 to 35201453 1543 CpG island CpG island 11566
Tssr23696 2 35200796 to 35200825 29 - TSS region transcription start site region 23696
Tssr23697 2 35200923 to 35201069 146 - TSS region transcription start site region 23697
Cpgi11567 2 35224457 to 35224654 197 CpG island CpG island 11567
Tssr17456 2 35224516 to 35224548 32 + TSS region transcription start site region 17456
Gm13605 2 35224533 to 35226685 2152 + lincRNA gene predicted gene 13605
Cpgi11568 2 35256084 to 35256841 757 CpG island CpG island 11568
Tssr17457 2 35256365 to 35256448 83 + TSS region transcription start site region 17457
Gsn 2 35256380 to 35307892 51512 + protein coding gene gelsolin
Tssr17458 2 35259653 to 35259657 4 + TSS region transcription start site region 17458
Gm39796 2 35262665 to 35266812 4147 - lncRNA gene predicted gene, 39796
Tssr17459 2 35266764 to 35266845 81 + TSS region transcription start site region 17459
Gm39795 2 35267662 to 35280451 12789 - lncRNA gene predicted gene, 39795
Gm43128 2 35280390 to 35282010 1620 + unclassified gene predicted gene 43128
Cpgi11569 2 35282260 to 35282616 356 CpG island CpG island 11569
Tssr17460 2 35282299 to 35282318 19 + TSS region transcription start site region 17460
Tssr17461 2 35282321 to 35282329 8 + TSS region transcription start site region 17461
Tssr17462 2 35282427 to 35282442 15 + TSS region transcription start site region 17462
Tssr17463 2 35283992 to 35284014 22 + TSS region transcription start site region 17463
Tssr17464 2 35284698 to 35284709 11 + TSS region transcription start site region 17464
Tssr17465 2 35284771 to 35284787 16 + TSS region transcription start site region 17465
Tssr17466 2 35292627 to 35292639 12 + TSS region transcription start site region 17466
Tssr17467 2 35292654 to 35292686 32 + TSS region transcription start site region 17467
Tssr23698 2 35303266 to 35303272 6 - TSS region transcription start site region 23698
Stom 2 35313986 to 35336976 22990 - protein coding gene stomatin
Tssr23699 2 35315222 to 35315248 26 - TSS region transcription start site region 23699
Tssr23700 2 35315273 to 35315285 12 - TSS region transcription start site region 23700
Tssr23701 2 35315426 to 35315448 22 - TSS region transcription start site region 23701
Tssr23702 2 35315495 to 35315506 11 - TSS region transcription start site region 23702
Tssr23703 2 35315637 to 35315648 11 - TSS region transcription start site region 23703
Tssr17468 2 35331070 to 35331073 3 + TSS region transcription start site region 17468
Cpgi11570 2 35336495 to 35337272 777 CpG island CpG island 11570
Tssr23704 2 35336969 to 35336983 14 - TSS region transcription start site region 23704
Tssr23705 2 35337003 to 35337017 14 - TSS region transcription start site region 23705
Tssr17469 2 35340337 to 35340366 29 + TSS region transcription start site region 17469
Gm13443 2 35340409 to 35340963 554 + pseudogene predicted gene 13443
Tssr479 2 35341560 to 35341565 5 + TSS region transcription start site region 479
4930568D16Rik 2 35354218 to 35367729 13511 - protein coding gene RIKEN cDNA 4930568D16 gene
Tssr23706 2 35367716 to 35367726 10 - TSS region transcription start site region 23706
Tssr23707 2 35367730 to 35367737 7 - TSS region transcription start site region 23707
4930402F06Rik 2 35375562 to 35397174 21612 - protein coding gene RIKEN cDNA 4930402F06 gene
Gm39797 2 35376280 to 35387709 11429 + lncRNA gene predicted gene, 39797
Tssr23708 2 35397174 to 35397208 34 - TSS region transcription start site region 23708
Ggta1 2 35400179 to 35463231 63052 - protein coding gene glycoprotein galactosyltransferase alpha 1, 3
Tssr23709 2 35402376 to 35402391 15 - TSS region transcription start site region 23709
D2Mit515 2 35406491 to 35406607 116 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-515