Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:34559341-34949355

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapkap1 2 34406771 to 34624950 218179 + protein coding gene mitogen-activated protein kinase associated protein 1
Gm34178 2 34551556 to 34580470 28914 - lncRNA gene predicted gene, 34178
Tssr17406 2 34564970 to 34564977 7 + TSS region transcription start site region 17406
Gm13408 2 34564999 to 34565796 797 + pseudogene predicted gene 13408
Tssr17407 2 34589650 to 34589656 6 + TSS region transcription start site region 17407
Tssr17408 2 34608406 to 34608464 58 + TSS region transcription start site region 17408
1700007J24Rik 2 34608438 to 34609366 928 unclassified non-coding RNA gene RIKEN cDNA 1700007J24 gene
Tssr17409 2 34608465 to 34608479 14 + TSS region transcription start site region 17409
Tssr17410 2 34608481 to 34608491 10 + TSS region transcription start site region 17410
Tssr17411 2 34608498 to 34608507 9 + TSS region transcription start site region 17411
Tssr17412 2 34608513 to 34608518 5 + TSS region transcription start site region 17412
Cpgi11553 2 34638998 to 34639615 617 CpG island CpG island 11553
Gm34372 2 34639008 to 34651471 12463 + lncRNA gene predicted gene, 34372
Gm13414 2 34649514 to 34650240 726 - pseudogene predicted gene 13414
Cpgi11554 2 34671106 to 34672033 927 CpG island CpG island 11554
Gapvd1 2 34676179 to 34755265 79086 - protein coding gene GTPase activating protein and VPS9 domains 1
Tssr23642 2 34692559 to 34692563 4 - TSS region transcription start site region 23642
Tssr23643 2 34725439 to 34725448 9 - TSS region transcription start site region 23643
Tssr23644 2 34733097 to 34733108 11 - TSS region transcription start site region 23644
Cpgi11555 2 34753640 to 34754636 996 CpG island CpG island 11555
Tssr23645 2 34754341 to 34754355 14 - TSS region transcription start site region 23645
Tssr23646 2 34754364 to 34754432 68 - TSS region transcription start site region 23646
Tssr23647 2 34755229 to 34755252 23 - TSS region transcription start site region 23647
Cpgi11556 2 34771433 to 34772846 1413 CpG island CpG island 11556
Tssr23648 2 34771750 to 34771816 66 - TSS region transcription start site region 23648
Tssr17413 2 34772089 to 34772094 5 + TSS region transcription start site region 17413
Hspa5 2 34772090 to 34776529 4439 + protein coding gene heat shock protein 5
Tssr17414 2 34772582 to 34772615 33 + TSS region transcription start site region 17414
Tssr17415 2 34772689 to 34772763 74 + TSS region transcription start site region 17415
Tssr473 2 34774020 to 34774048 28 + TSS region transcription start site region 473
Tssr23649 2 34774059 to 34774081 22 - TSS region transcription start site region 23649
Tssr17416 2 34774180 to 34774216 36 + TSS region transcription start site region 17416
Tssr17417 2 34774358 to 34774390 32 + TSS region transcription start site region 17417
Tssr17418 2 34774658 to 34774669 11 + TSS region transcription start site region 17418
Tssr17419 2 34774680 to 34774746 66 + TSS region transcription start site region 17419
Tssr17420 2 34775115 to 34775136 21 + TSS region transcription start site region 17420
Tssr17421 2 34775143 to 34775199 56 + TSS region transcription start site region 17421
Tssr17422 2 34775533 to 34775578 45 + TSS region transcription start site region 17422
Tssr17423 2 34775581 to 34775593 12 + TSS region transcription start site region 17423
Tssr17424 2 34775595 to 34775645 50 + TSS region transcription start site region 17424
Tssr17425 2 34775719 to 34775748 29 + TSS region transcription start site region 17425
Tssr17426 2 34775758 to 34775781 23 + TSS region transcription start site region 17426
Tssr17427 2 34775787 to 34775822 35 + TSS region transcription start site region 17427
Tssr17428 2 34775885 to 34775972 87 + TSS region transcription start site region 17428
Tssr17429 2 34776269 to 34776277 8 + TSS region transcription start site region 17429
Rabepk 2 34777556 to 34799912 22356 - protein coding gene Rab9 effector protein with kelch motifs
Tssr23650 2 34790331 to 34790356 25 - TSS region transcription start site region 23650
Cpgi11557 2 34799493 to 34799964 471 CpG island CpG island 11557
Tssr23651 2 34799711 to 34799726 15 - TSS region transcription start site region 23651
Tssr23652 2 34799767 to 34799826 59 - TSS region transcription start site region 23652
Tssr23653 2 34799832 to 34799884 52 - TSS region transcription start site region 23653
2700071L08Rik 2 34801652 to 34802800 1148 unclassified non-coding RNA gene RIKEN cDNA 2700071L08 gene
Cpgi11558 2 34802135 to 34802690 555 CpG island CpG island 11558
4930550L05Rik 2 34802317 to 34811905 9588 unclassified gene RIKEN cDNA 4930550L05 gene
Tssr17430 2 34802336 to 34802391 55 + TSS region transcription start site region 17430
Fbxw2 2 34804514 to 34826311 21797 - protein coding gene F-box and WD-40 domain protein 2
Tssr23654 2 34807675 to 34807676 1 - TSS region transcription start site region 23654
Tssr23655 2 34821618 to 34821630 12 - TSS region transcription start site region 23655
Cpgi11559 2 34825854 to 34826419 565 CpG island CpG island 11559
Tssr23656 2 34826076 to 34826087 11 - TSS region transcription start site region 23656
Tssr23657 2 34826160 to 34826181 21 - TSS region transcription start site region 23657
Tssr23658 2 34826187 to 34826240 53 - TSS region transcription start site region 23658
Tssr17431 2 34826278 to 34826299 21 + TSS region transcription start site region 17431
Gm13419 2 34830840 to 34831110 270 + pseudogene predicted gene 13419
Gm34653 2 34833007 to 34839728 6721 + protein coding gene predicted gene, 34653
Tssr23659 2 34851557 to 34851565 8 - TSS region transcription start site region 23659
Psmd5 2 34852087 to 34870962 18875 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
Tssr23660 2 34862044 to 34862055 11 - TSS region transcription start site region 23660
5730407M17Rik 2 34870395 to 34872449 2054 unclassified gene RIKEN cDNA 5730407M17 gene
Cpgi11560 2 34870575 to 34871463 888 CpG island CpG island 11560
Tssr23661 2 34870921 to 34870980 59 - TSS region transcription start site region 23661
Tssr17432 2 34871089 to 34871113 24 + TSS region transcription start site region 17432
Cutal 2 34874396 to 34892132 17736 + protein coding gene cutA divalent cation tolerance homolog-like
Tssr17433 2 34874412 to 34874481 69 + TSS region transcription start site region 17433
Tssr17434 2 34874486 to 34874515 29 + TSS region transcription start site region 17434
Tssr17435 2 34879442 to 34879446 4 + TSS region transcription start site region 17435
Phf19 2 34893757 to 34914026 20269 - protein coding gene PHD finger protein 19
Cpgi11561 2 34904879 to 34905633 754 CpG island CpG island 11561
Gm13448 2 34912871 to 34916014 3143 + unclassified non-coding RNA gene predicted gene 13448
Cpgi11562 2 34913088 to 34914636 1548 CpG island CpG island 11562
Tssr474 2 34913530 to 34913537 7 + TSS region transcription start site region 474
Tssr23662 2 34914020 to 34914043 23 - TSS region transcription start site region 23662
Tssr17436 2 34914321 to 34914338 17 + TSS region transcription start site region 17436
Gm24905 2 34916250 to 34916353 103 + snRNA gene predicted gene, 24905
Tssr23663 2 34940037 to 34940072 35 - TSS region transcription start site region 23663
Tssr23664 2 34940145 to 34940159 14 - TSS region transcription start site region 23664
Traf1 2 34941750 to 34961772 20022 - protein coding gene TNF receptor-associated factor 1
Tssr23665 2 34944508 to 34944530 22 - TSS region transcription start site region 23665