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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:33962663-34782760

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11550 2 33966461 to 33966961 500 CpG island CpG island 11550
D2Mit239 2 33967639 to 33967769 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 239
Gm13404 2 33978246 to 33980324 2078 + lincRNA gene predicted gene 13404
C230014O12Rik 2 34018289 to 34107735 89446 - lincRNA gene RIKEN cDNA C230014O12 gene
D2Mit236 2 34074877 to 34075071 194 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 236
Gm38389 2 34097397 to 34111444 14047 - lincRNA gene predicted gene, 38389
D2Dcr48 2 34121026 to 34121127 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 48
D2Mit238 2 34121050 to 34121183 133 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 238
D2Mit202 2 34165700 to 34165836 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 202
Pbx3 2 34171457 to 34372045 200588 - protein coding gene pre B cell leukemia homeobox 3
Tssr23625 2 34255470 to 34255473 3 - TSS region transcription start site region 23625
Tssr23626 2 34262887 to 34262890 3 - TSS region transcription start site region 23626
Tssr23627 2 34278316 to 34278320 4 - TSS region transcription start site region 23627
C79798 2 34287771 to 34304440 16669 + antisense lncRNA gene expressed sequence C79798
Tssr23628 2 34291409 to 34291413 4 - TSS region transcription start site region 23628
Tssr23629 2 34311149 to 34311155 6 - TSS region transcription start site region 23629
Tssr23630 2 34322867 to 34322872 5 - TSS region transcription start site region 23630
Tssr23631 2 34326683 to 34326692 9 - TSS region transcription start site region 23631
B930068K11Rik 2 34337581 to 34341955 4374 unclassified gene RIKEN cDNA B930068K11 gene
Tssr23632 2 34350619 to 34350622 3 - TSS region transcription start site region 23632
Cpgi11551 2 34371001 to 34373476 2475 CpG island CpG island 11551
Tssr23633 2 34371110 to 34371155 45 - TSS region transcription start site region 23633
Tssr23634 2 34371753 to 34371772 19 - TSS region transcription start site region 23634
Tssr23635 2 34371841 to 34371854 13 - TSS region transcription start site region 23635
Tssr23636 2 34371926 to 34371991 65 - TSS region transcription start site region 23636
Tssr23637 2 34372004 to 34372027 23 - TSS region transcription start site region 23637
Tssr23638 2 34372139 to 34372154 15 - TSS region transcription start site region 23638
Tssr23639 2 34372591 to 34372598 7 - TSS region transcription start site region 23639
Tssr23640 2 34372640 to 34372651 11 - TSS region transcription start site region 23640
Tssr23641 2 34372663 to 34372760 97 - TSS region transcription start site region 23641
Cpgi11552 2 34406642 to 34407379 737 CpG island CpG island 11552
Mapkap1 2 34406771 to 34624950 218179 + protein coding gene mitogen-activated protein kinase associated protein 1
Tssr17401 2 34406845 to 34406880 35 + TSS region transcription start site region 17401
Tssr17402 2 34406882 to 34406896 14 + TSS region transcription start site region 17402
Tssr17403 2 34406924 to 34406938 14 + TSS region transcription start site region 17403
Tssr17404 2 34406949 to 34406960 11 + TSS region transcription start site region 17404
Tssr17405 2 34406961 to 34406972 11 + TSS region transcription start site region 17405
Gm13407 2 34412988 to 34413347 359 - pseudogene predicted gene 13407
5830434F19Rik 2 34415740 to 34417274 1534 unclassified gene RIKEN cDNA 5830434F19 gene
Gm13406 2 34436327 to 34436582 255 - pseudogene predicted gene 13406
D2Mit204 2 34445279 to 34445411 132 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 204
4930414H07Rik 2 34502625 to 34503441 816 unclassified gene RIKEN cDNA 4930414H07 gene
Gm34178 2 34551556 to 34580470 28914 - lncRNA gene predicted gene, 34178
Tssr17406 2 34564970 to 34564977 7 + TSS region transcription start site region 17406
Gm13408 2 34564999 to 34565796 797 + pseudogene predicted gene 13408
Tssr17407 2 34589650 to 34589656 6 + TSS region transcription start site region 17407
Tssr17408 2 34608406 to 34608464 58 + TSS region transcription start site region 17408
1700007J24Rik 2 34608438 to 34609366 928 unclassified non-coding RNA gene RIKEN cDNA 1700007J24 gene
Tssr17409 2 34608465 to 34608479 14 + TSS region transcription start site region 17409
Tssr17410 2 34608481 to 34608491 10 + TSS region transcription start site region 17410
Tssr17411 2 34608498 to 34608507 9 + TSS region transcription start site region 17411
Tssr17412 2 34608513 to 34608518 5 + TSS region transcription start site region 17412
Cpgi11553 2 34638998 to 34639615 617 CpG island CpG island 11553
Gm34372 2 34639008 to 34651471 12463 + lncRNA gene predicted gene, 34372
Gm13414 2 34649514 to 34650240 726 - pseudogene predicted gene 13414
Cpgi11554 2 34671106 to 34672033 927 CpG island CpG island 11554
Gapvd1 2 34676179 to 34755265 79086 - protein coding gene GTPase activating protein and VPS9 domains 1
Tssr23642 2 34692559 to 34692563 4 - TSS region transcription start site region 23642
Tssr23643 2 34725439 to 34725448 9 - TSS region transcription start site region 23643
Tssr23644 2 34733097 to 34733108 11 - TSS region transcription start site region 23644
Cpgi11555 2 34753640 to 34754636 996 CpG island CpG island 11555
Tssr23645 2 34754341 to 34754355 14 - TSS region transcription start site region 23645
Tssr23646 2 34754364 to 34754432 68 - TSS region transcription start site region 23646
Tssr23647 2 34755229 to 34755252 23 - TSS region transcription start site region 23647
Cpgi11556 2 34771433 to 34772846 1413 CpG island CpG island 11556
Tssr23648 2 34771750 to 34771816 66 - TSS region transcription start site region 23648
Tssr17413 2 34772089 to 34772094 5 + TSS region transcription start site region 17413
Hspa5 2 34772090 to 34776529 4439 + protein coding gene heat shock protein 5
Tssr17414 2 34772582 to 34772615 33 + TSS region transcription start site region 17414
Tssr17415 2 34772689 to 34772763 74 + TSS region transcription start site region 17415
Tssr473 2 34774020 to 34774048 28 + TSS region transcription start site region 473
Tssr23649 2 34774059 to 34774081 22 - TSS region transcription start site region 23649
Tssr17416 2 34774180 to 34774216 36 + TSS region transcription start site region 17416
Tssr17417 2 34774358 to 34774390 32 + TSS region transcription start site region 17417
Tssr17418 2 34774658 to 34774669 11 + TSS region transcription start site region 17418
Tssr17419 2 34774680 to 34774746 66 + TSS region transcription start site region 17419
Tssr17420 2 34775115 to 34775136 21 + TSS region transcription start site region 17420
Tssr17421 2 34775143 to 34775199 56 + TSS region transcription start site region 17421
Tssr17422 2 34775533 to 34775578 45 + TSS region transcription start site region 17422
Tssr17423 2 34775581 to 34775593 12 + TSS region transcription start site region 17423
Tssr17424 2 34775595 to 34775645 50 + TSS region transcription start site region 17424
Tssr17425 2 34775719 to 34775748 29 + TSS region transcription start site region 17425
Tssr17426 2 34775758 to 34775781 23 + TSS region transcription start site region 17426
Tssr17427 2 34775787 to 34775822 35 + TSS region transcription start site region 17427
Tssr17428 2 34775885 to 34775972 87 + TSS region transcription start site region 17428
Tssr17429 2 34776269 to 34776277 8 + TSS region transcription start site region 17429
Rabepk 2 34777556 to 34799912 22356 - protein coding gene Rab9 effector protein with kelch motifs