Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:33381054-33901068

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia24 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 24
Cia25 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 25
Zbtb34 2 33406108 to 33431324 25216 - protein coding gene zinc finger and BTB domain containing 34
Cpgi11538 2 33430492 to 33431679 1187 CpG island CpG island 11538
Tssr23600 2 33431294 to 33431347 53 - TSS region transcription start site region 23600
Tssr17388 2 33431380 to 33431408 28 + TSS region transcription start site region 17388
Tssr23601 2 33439621 to 33439665 44 - TSS region transcription start site region 23601
Tssr17389 2 33446764 to 33446777 13 + TSS region transcription start site region 17389
Gm13536 2 33446802 to 33449207 2405 + antisense lncRNA gene predicted gene 13536
Zbtb43 2 33450287 to 33468559 18272 - protein coding gene zinc finger and BTB domain containing 43
Cpgi11539 2 33467598 to 33468774 1176 CpG island CpG island 11539
Tssr17390 2 33468087 to 33468115 28 + TSS region transcription start site region 17390
Tssr23602 2 33468493 to 33468572 79 - TSS region transcription start site region 23602
Gm13530 2 33489782 to 33503632 13850 + lincRNA gene predicted gene 13530
Gm33642 2 33512290 to 33544499 32209 - lncRNA gene predicted gene, 33642
Cpgi11540 2 33543701 to 33544780 1079 CpG island CpG island 11540
Gm39789 2 33552283 to 33555511 3228 - lncRNA gene predicted gene, 39789
Lmx1b 2 33560965 to 33640511 79546 - protein coding gene LIM homeobox transcription factor 1 beta
Cpgi11541 2 33568979 to 33569362 383 CpG island CpG island 11541
Cpgi11542 2 33580576 to 33581212 636 CpG island CpG island 11542
Gm38011 2 33614398 to 33614676 278 + unclassified gene predicted gene, 38011
Cpgi11543 2 33616288 to 33617123 835 CpG island CpG island 11543
Cpgi11544 2 33631387 to 33632345 958 CpG island CpG island 11544
D2Mit367 2 33633010 to 33633160 150 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 367
D2Dcr47 2 33633020 to 33633162 142 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 47
Cpgi11545 2 33636188 to 33636642 454 CpG island CpG island 11545
Cpgi11546 2 33639046 to 33641751 2705 CpG island CpG island 11546
Gm39790 2 33639682 to 33640471 789 + lncRNA gene predicted gene, 39790
Tssr23603 2 33640866 to 33640890 24 - TSS region transcription start site region 23603
Tssr17391 2 33641054 to 33641068 14 + TSS region transcription start site region 17391
Tssr23604 2 33641064 to 33641081 17 - TSS region transcription start site region 23604
Tssr23605 2 33641092 to 33641112 20 - TSS region transcription start site region 23605
C130021I20Rik 2 33641193 to 33645663 4470 + antisense lncRNA gene Riken cDNA C130021I20 gene
Tssr17392 2 33641250 to 33641263 13 + TSS region transcription start site region 17392
Tssr17393 2 33641267 to 33641322 55 + TSS region transcription start site region 17393
Tssr17394 2 33641327 to 33641337 10 + TSS region transcription start site region 17394
Cpgi11547 2 33641966 to 33643456 1490 CpG island CpG island 11547
Tssr17395 2 33642596 to 33642604 8 + TSS region transcription start site region 17395
Cpgi11548 2 33643776 to 33644700 924 CpG island CpG island 11548
Gm13529 2 33652389 to 33652798 409 - pseudogene predicted gene 13529
9430024E24Rik 2 33716361 to 33718899 2538 - lincRNA gene RIKEN cDNA 9430024E24 gene
Tssr23606 2 33718726 to 33718737 11 - TSS region transcription start site region 23606
Tssr23607 2 33718747 to 33718759 12 - TSS region transcription start site region 23607
Tssr23608 2 33718782 to 33718783 1 - TSS region transcription start site region 23608
Tssr23609 2 33718789 to 33718799 10 - TSS region transcription start site region 23609
Mvb12b 2 33729953 to 33887946 157993 - protein coding gene multivesicular body subunit 12B
Tssr23610 2 33733360 to 33733380 20 - TSS region transcription start site region 23610
Tssr23611 2 33733419 to 33733423 4 - TSS region transcription start site region 23611
Tssr23612 2 33745025 to 33745028 3 - TSS region transcription start site region 23612
Tssr23613 2 33755267 to 33755285 18 - TSS region transcription start site region 23613
Tssr23614 2 33781700 to 33781715 15 - TSS region transcription start site region 23614
Gm33856 2 33794214 to 33798487 4273 + lncRNA gene predicted gene, 33856
Tssr17396 2 33794745 to 33794754 9 + TSS region transcription start site region 17396
Tssr17397 2 33805807 to 33805819 12 + TSS region transcription start site region 17397
Nron 2 33805816 to 33813591 7775 + antisense lncRNA gene non-protein coding RNA, repressor of NFAT
Tssr17398 2 33805854 to 33805875 21 + TSS region transcription start site region 17398
Tssr17399 2 33825098 to 33825108 10 + TSS region transcription start site region 17399
Tssr23615 2 33855166 to 33855171 5 - TSS region transcription start site region 23615
Cpgi11549 2 33886579 to 33888247 1668 CpG island CpG island 11549
Tssr23616 2 33887367 to 33887381 14 - TSS region transcription start site region 23616
Tssr23617 2 33887383 to 33887400 17 - TSS region transcription start site region 23617
Tssr23618 2 33887407 to 33887420 13 - TSS region transcription start site region 23618
Tssr23619 2 33887435 to 33887515 80 - TSS region transcription start site region 23619
Tssr23620 2 33887553 to 33887586 33 - TSS region transcription start site region 23620
Tssr23621 2 33887718 to 33887727 9 - TSS region transcription start site region 23621
Tssr23622 2 33887862 to 33887877 15 - TSS region transcription start site region 23622
Gm39792 2 33898117 to 33908399 10282 - lncRNA gene predicted gene, 39792
D2Mit203 2 33899954 to 33900102 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 203