Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:33128493-33808572

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia25 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 25
Cia24 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 24
Garnl3 2 32986224 to 33131654 145430 - protein coding gene GTPase activating RANGAP domain-like 3
Cpgi11536 2 33129834 to 33131748 1914 CpG island CpG island 11536
Tssr23587 2 33130221 to 33130251 30 - TSS region transcription start site region 23587
Tssr23588 2 33130466 to 33130479 13 - TSS region transcription start site region 23588
Tssr23589 2 33130565 to 33130620 55 - TSS region transcription start site region 23589
Tssr17377 2 33130889 to 33130899 10 + TSS region transcription start site region 17377
Tssr23590 2 33131645 to 33131658 13 - TSS region transcription start site region 23590
Tssr23591 2 33131676 to 33131695 19 - TSS region transcription start site region 23591
Gm33536 2 33131709 to 33132961 1252 + lncRNA gene predicted gene, 33536
Ralgps1 2 33133417 to 33371486 238069 - protein coding gene Ral GEF with PH domain and SH3 binding motif 1
Tssr17378 2 33176784 to 33176806 22 + TSS region transcription start site region 17378
Tssr17379 2 33177888 to 33177917 29 + TSS region transcription start site region 17379
Gm13528 2 33177902 to 33181881 3979 + antisense lncRNA gene predicted gene 13528
Tssr17380 2 33207021 to 33207029 8 + TSS region transcription start site region 17380
Gm23546 2 33211805 to 33211941 136 - snoRNA gene predicted gene, 23546
Tssr17381 2 33216010 to 33216021 11 + TSS region transcription start site region 17381
Tssr17382 2 33216023 to 33216034 11 + TSS region transcription start site region 17382
Tssr17383 2 33216051 to 33216084 33 + TSS region transcription start site region 17383
Angptl2 2 33216069 to 33247717 31648 + protein coding gene angiopoietin-like 2
Tssr17384 2 33216090 to 33216106 16 + TSS region transcription start site region 17384
Tssr17385 2 33216109 to 33216124 15 + TSS region transcription start site region 17385
Tssr17386 2 33228355 to 33228366 11 + TSS region transcription start site region 17386
Tssr17387 2 33228843 to 33228857 14 + TSS region transcription start site region 17387
Tssr23592 2 33260906 to 33260926 20 - TSS region transcription start site region 23592
Tssr23593 2 33260931 to 33260957 26 - TSS region transcription start site region 23593
Tssr23594 2 33304840 to 33304847 7 - TSS region transcription start site region 23594
Gm13537 2 33323171 to 33323437 266 + pseudogene predicted gene 13537
Tssr23595 2 33336902 to 33336909 7 - TSS region transcription start site region 23595
Tssr23596 2 33353587 to 33353608 21 - TSS region transcription start site region 23596
Tssr472 2 33353625 to 33353636 11 - TSS region transcription start site region 472
Gm25998 2 33362994 to 33363046 52 - miRNA gene predicted gene, 25998
Cpgi11537 2 33370652 to 33371790 1138 CpG island CpG island 11537
Tssr23597 2 33371382 to 33371389 7 - TSS region transcription start site region 23597
Tssr23598 2 33371400 to 33371484 84 - TSS region transcription start site region 23598
Tssr23599 2 33371486 to 33371499 13 - TSS region transcription start site region 23599
Zbtb34 2 33406108 to 33431324 25216 - protein coding gene zinc finger and BTB domain containing 34
Cpgi11538 2 33430492 to 33431679 1187 CpG island CpG island 11538
Tssr23600 2 33431294 to 33431347 53 - TSS region transcription start site region 23600
Tssr17388 2 33431380 to 33431408 28 + TSS region transcription start site region 17388
Tssr23601 2 33439621 to 33439665 44 - TSS region transcription start site region 23601
Tssr17389 2 33446764 to 33446777 13 + TSS region transcription start site region 17389
Gm13536 2 33446802 to 33449207 2405 + antisense lncRNA gene predicted gene 13536
Zbtb43 2 33450287 to 33468559 18272 - protein coding gene zinc finger and BTB domain containing 43
Cpgi11539 2 33467598 to 33468774 1176 CpG island CpG island 11539
Tssr17390 2 33468087 to 33468115 28 + TSS region transcription start site region 17390
Tssr23602 2 33468493 to 33468572 79 - TSS region transcription start site region 23602
Gm13530 2 33489782 to 33503632 13850 + lincRNA gene predicted gene 13530
Gm33642 2 33512290 to 33544499 32209 - lncRNA gene predicted gene, 33642
Cpgi11540 2 33543701 to 33544780 1079 CpG island CpG island 11540
Gm39789 2 33552283 to 33555511 3228 - lncRNA gene predicted gene, 39789
Lmx1b 2 33560965 to 33640511 79546 - protein coding gene LIM homeobox transcription factor 1 beta
Cpgi11541 2 33568979 to 33569362 383 CpG island CpG island 11541
Cpgi11542 2 33580576 to 33581212 636 CpG island CpG island 11542
Gm38011 2 33614398 to 33614676 278 + unclassified gene predicted gene, 38011
Cpgi11543 2 33616288 to 33617123 835 CpG island CpG island 11543
Cpgi11544 2 33631387 to 33632345 958 CpG island CpG island 11544
D2Mit367 2 33633010 to 33633160 150 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 367
D2Dcr47 2 33633020 to 33633162 142 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 47
Cpgi11545 2 33636188 to 33636642 454 CpG island CpG island 11545
Cpgi11546 2 33639046 to 33641751 2705 CpG island CpG island 11546
Gm39790 2 33639682 to 33640471 789 + lncRNA gene predicted gene, 39790
Tssr23603 2 33640866 to 33640890 24 - TSS region transcription start site region 23603
Tssr17391 2 33641054 to 33641068 14 + TSS region transcription start site region 17391
Tssr23604 2 33641064 to 33641081 17 - TSS region transcription start site region 23604
Tssr23605 2 33641092 to 33641112 20 - TSS region transcription start site region 23605
C130021I20Rik 2 33641193 to 33645663 4470 + antisense lncRNA gene Riken cDNA C130021I20 gene
Tssr17392 2 33641250 to 33641263 13 + TSS region transcription start site region 17392
Tssr17393 2 33641267 to 33641322 55 + TSS region transcription start site region 17393
Tssr17394 2 33641327 to 33641337 10 + TSS region transcription start site region 17394
Cpgi11547 2 33641966 to 33643456 1490 CpG island CpG island 11547
Tssr17395 2 33642596 to 33642604 8 + TSS region transcription start site region 17395
Cpgi11548 2 33643776 to 33644700 924 CpG island CpG island 11548
Gm13529 2 33652389 to 33652798 409 - pseudogene predicted gene 13529
9430024E24Rik 2 33716361 to 33718899 2538 - lincRNA gene RIKEN cDNA 9430024E24 gene
Tssr23606 2 33718726 to 33718737 11 - TSS region transcription start site region 23606
Tssr23607 2 33718747 to 33718759 12 - TSS region transcription start site region 23607
Tssr23608 2 33718782 to 33718783 1 - TSS region transcription start site region 23608
Tssr23609 2 33718789 to 33718799 10 - TSS region transcription start site region 23609
Mvb12b 2 33729953 to 33887946 157993 - protein coding gene multivesicular body subunit 12B
Tssr23610 2 33733360 to 33733380 20 - TSS region transcription start site region 23610
Tssr23611 2 33733419 to 33733423 4 - TSS region transcription start site region 23611
Tssr23612 2 33745025 to 33745028 3 - TSS region transcription start site region 23612
Tssr23613 2 33755267 to 33755285 18 - TSS region transcription start site region 23613
Tssr23614 2 33781700 to 33781715 15 - TSS region transcription start site region 23614
Gm33856 2 33794214 to 33798487 4273 + lncRNA gene predicted gene, 33856
Tssr17396 2 33794745 to 33794754 9 + TSS region transcription start site region 17396
Tssr17397 2 33805807 to 33805819 12 + TSS region transcription start site region 17397
Nron 2 33805816 to 33813591 7775 + antisense lncRNA gene non-protein coding RNA, repressor of NFAT
Tssr17398 2 33805854 to 33805875 21 + TSS region transcription start site region 17398