Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:32935906-33585926

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrsam1 2 32925216 to 32961614 36398 - protein coding gene leucine rich repeat and sterile alpha motif containing 1
Cpgi11533 2 32961359 to 32962514 1155 CpG island CpG island 11533
Tssr23575 2 32961594 to 32961620 26 - TSS region transcription start site region 23575
Tssr23576 2 32961635 to 32961646 11 - TSS region transcription start site region 23576
Tssr17373 2 32961665 to 32961692 27 + TSS region transcription start site region 17373
Tssr17374 2 32961701 to 32961714 13 + TSS region transcription start site region 17374
Rpl12 2 32961712 to 32964045 2333 + protein coding gene ribosomal protein L12
Snora65 2 32963301 to 32963418 117 + snoRNA gene small nucleolar RNA, H/ACA box 65
Cpgi11534 2 32966526 to 32967550 1024 CpG island CpG island 11534
Tssr23577 2 32966874 to 32966894 20 - TSS region transcription start site region 23577
Tssr17375 2 32966944 to 32966976 32 + TSS region transcription start site region 17375
Tssr470 2 32966982 to 32966994 12 + TSS region transcription start site region 470
Tssr17376 2 32966997 to 32967009 12 + TSS region transcription start site region 17376
Slc2a8 2 32972990 to 32982083 9093 - protein coding gene solute carrier family 2, (facilitated glucose transporter), member 8
Tssr471 2 32978144 to 32978146 2 + TSS region transcription start site region 471
Cpgi11535 2 32981238 to 32982288 1050 CpG island CpG island 11535
Tssr23578 2 32982007 to 32982086 79 - TSS region transcription start site region 23578
Tssr23579 2 32982147 to 32982166 19 - TSS region transcription start site region 23579
Tssr23580 2 32982173 to 32982185 12 - TSS region transcription start site region 23580
Garnl3 2 32986224 to 33131654 145430 - protein coding gene GTPase activating RANGAP domain-like 3
Gm38299 2 32998527 to 33002315 3788 - unclassified gene predicted gene, 38299
Tssr23581 2 33086204 to 33086215 11 - TSS region transcription start site region 23581
Tssr23582 2 33086229 to 33086241 12 - TSS region transcription start site region 23582
Tssr23583 2 33086253 to 33086264 11 - TSS region transcription start site region 23583
Tssr23584 2 33086267 to 33086284 17 - TSS region transcription start site region 23584
Tssr23585 2 33086430 to 33086447 17 - TSS region transcription start site region 23585
Tssr23586 2 33087169 to 33087207 38 - TSS region transcription start site region 23586
Cpgi11536 2 33129834 to 33131748 1914 CpG island CpG island 11536
Tssr23587 2 33130221 to 33130251 30 - TSS region transcription start site region 23587
Tssr23588 2 33130466 to 33130479 13 - TSS region transcription start site region 23588
Tssr23589 2 33130565 to 33130620 55 - TSS region transcription start site region 23589
Tssr17377 2 33130889 to 33130899 10 + TSS region transcription start site region 17377
Tssr23590 2 33131645 to 33131658 13 - TSS region transcription start site region 23590
Tssr23591 2 33131676 to 33131695 19 - TSS region transcription start site region 23591
Gm33536 2 33131709 to 33132961 1252 + lncRNA gene predicted gene, 33536
Ralgps1 2 33133417 to 33371486 238069 - protein coding gene Ral GEF with PH domain and SH3 binding motif 1
Tssr17378 2 33176784 to 33176806 22 + TSS region transcription start site region 17378
Tssr17379 2 33177888 to 33177917 29 + TSS region transcription start site region 17379
Gm13528 2 33177902 to 33181881 3979 + antisense lncRNA gene predicted gene 13528
Tssr17380 2 33207021 to 33207029 8 + TSS region transcription start site region 17380
Gm23546 2 33211805 to 33211941 136 - snoRNA gene predicted gene, 23546
Tssr17381 2 33216010 to 33216021 11 + TSS region transcription start site region 17381
Tssr17382 2 33216023 to 33216034 11 + TSS region transcription start site region 17382
Tssr17383 2 33216051 to 33216084 33 + TSS region transcription start site region 17383
Angptl2 2 33216069 to 33247717 31648 + protein coding gene angiopoietin-like 2
Tssr17384 2 33216090 to 33216106 16 + TSS region transcription start site region 17384
Tssr17385 2 33216109 to 33216124 15 + TSS region transcription start site region 17385
Tssr17386 2 33228355 to 33228366 11 + TSS region transcription start site region 17386
Tssr17387 2 33228843 to 33228857 14 + TSS region transcription start site region 17387
Tssr23592 2 33260906 to 33260926 20 - TSS region transcription start site region 23592
Tssr23593 2 33260931 to 33260957 26 - TSS region transcription start site region 23593
Tssr23594 2 33304840 to 33304847 7 - TSS region transcription start site region 23594
Gm13537 2 33323171 to 33323437 266 + pseudogene predicted gene 13537
Tssr23595 2 33336902 to 33336909 7 - TSS region transcription start site region 23595
Tssr23596 2 33353587 to 33353608 21 - TSS region transcription start site region 23596
Tssr472 2 33353625 to 33353636 11 - TSS region transcription start site region 472
Gm25998 2 33362994 to 33363046 52 - miRNA gene predicted gene, 25998
Cpgi11537 2 33370652 to 33371790 1138 CpG island CpG island 11537
Tssr23597 2 33371382 to 33371389 7 - TSS region transcription start site region 23597
Tssr23598 2 33371400 to 33371484 84 - TSS region transcription start site region 23598
Tssr23599 2 33371486 to 33371499 13 - TSS region transcription start site region 23599
Zbtb34 2 33406108 to 33431324 25216 - protein coding gene zinc finger and BTB domain containing 34
Cpgi11538 2 33430492 to 33431679 1187 CpG island CpG island 11538
Tssr23600 2 33431294 to 33431347 53 - TSS region transcription start site region 23600
Tssr17388 2 33431380 to 33431408 28 + TSS region transcription start site region 17388
Tssr23601 2 33439621 to 33439665 44 - TSS region transcription start site region 23601
Tssr17389 2 33446764 to 33446777 13 + TSS region transcription start site region 17389
Gm13536 2 33446802 to 33449207 2405 + antisense lncRNA gene predicted gene 13536
Zbtb43 2 33450287 to 33468559 18272 - protein coding gene zinc finger and BTB domain containing 43
Cpgi11539 2 33467598 to 33468774 1176 CpG island CpG island 11539
Tssr17390 2 33468087 to 33468115 28 + TSS region transcription start site region 17390
Tssr23602 2 33468493 to 33468572 79 - TSS region transcription start site region 23602
Gm13530 2 33489782 to 33503632 13850 + lincRNA gene predicted gene 13530
Gm33642 2 33512290 to 33544499 32209 - lncRNA gene predicted gene, 33642
Cpgi11540 2 33543701 to 33544780 1079 CpG island CpG island 11540
Gm39789 2 33552283 to 33555511 3228 - lncRNA gene predicted gene, 39789
Lmx1b 2 33560965 to 33640511 79546 - protein coding gene LIM homeobox transcription factor 1 beta
Cpgi11541 2 33568979 to 33569362 383 CpG island CpG island 11541
Cpgi11542 2 33580576 to 33581212 636 CpG island CpG island 11542