Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:32727169-33447207

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh2d3c 2 32721055 to 32755007 33952 + protein coding gene SH2 domain containing 3C
Cpgi11524 2 32727608 to 32727789 181 CpG island CpG island 11524
Tssr17347 2 32727682 to 32727712 30 + TSS region transcription start site region 17347
6330409D20Rik 2 32732620 to 32741016 8396 - protein coding gene RIKEN cDNA 6330409D20 gene
Tssr17348 2 32737358 to 32737389 31 + TSS region transcription start site region 17348
Cpgi11525 2 32741207 to 32742594 1387 CpG island CpG island 11525
Tssr17349 2 32741438 to 32741447 9 + TSS region transcription start site region 17349
Tssr17350 2 32741452 to 32741499 47 + TSS region transcription start site region 17350
Tssr23548 2 32742402 to 32742410 8 - TSS region transcription start site region 23548
Cpgi11526 2 32751029 to 32751683 654 CpG island CpG island 11526
Tssr17351 2 32751567 to 32751583 16 + TSS region transcription start site region 17351
Ttc16 2 32757026 to 32775633 18607 - protein coding gene tetratricopeptide repeat domain 16
Cpgi11527 2 32757033 to 32757867 834 CpG island CpG island 11527
Tor2a 2 32757234 to 32762244 5010 + protein coding gene torsin family 2, member A
Tssr17352 2 32757237 to 32757299 62 + TSS region transcription start site region 17352
Tssr23549 2 32771959 to 32771974 15 - TSS region transcription start site region 23549
Tssr23550 2 32775357 to 32775377 20 - TSS region transcription start site region 23550
Cpgi11528 2 32775376 to 32776592 1216 CpG island CpG island 11528
Tssr23551 2 32775378 to 32775398 20 - TSS region transcription start site region 23551
Tssr23552 2 32775405 to 32775413 8 - TSS region transcription start site region 23552
Tssr23553 2 32775595 to 32775619 24 - TSS region transcription start site region 23553
Tssr23554 2 32775625 to 32775649 24 - TSS region transcription start site region 23554
Tssr17353 2 32775769 to 32775791 22 + TSS region transcription start site region 17353
Ptrh1 2 32775786 to 32777597 1811 + protein coding gene peptidyl-tRNA hydrolase 1 homolog
Tssr17354 2 32775808 to 32775829 21 + TSS region transcription start site region 17354
Tssr17355 2 32775841 to 32775851 10 + TSS region transcription start site region 17355
Cfap157 2 32777413 to 32784405 6992 - protein coding gene cilia and flagella associated protein 157
Tssr23555 2 32784424 to 32784446 22 - TSS region transcription start site region 23555
Stxbp1 2 32787607 to 32847237 59630 - protein coding gene syntaxin binding protein 1
Tssr23556 2 32788285 to 32788294 9 - TSS region transcription start site region 23556
Tssr23557 2 32788328 to 32788348 20 - TSS region transcription start site region 23557
Tssr23558 2 32788420 to 32788443 23 - TSS region transcription start site region 23558
Tssr23559 2 32788710 to 32788731 21 - TSS region transcription start site region 23559
Tssr23560 2 32788732 to 32788767 35 - TSS region transcription start site region 23560
Tssr23561 2 32789465 to 32789474 9 - TSS region transcription start site region 23561
Tssr23562 2 32789498 to 32789508 10 - TSS region transcription start site region 23562
Tssr23563 2 32789522 to 32789543 21 - TSS region transcription start site region 23563
Tssr23564 2 32796079 to 32796091 12 - TSS region transcription start site region 23564
Tssr23565 2 32823173 to 32823200 27 - TSS region transcription start site region 23565
Tssr23566 2 32824958 to 32824962 4 - TSS region transcription start site region 23566
Tssr23567 2 32829396 to 32829418 22 - TSS region transcription start site region 23567
Gm24165 2 32831989 to 32832116 127 + snoRNA gene predicted gene, 24165
Tssr17356 2 32845917 to 32845942 25 + TSS region transcription start site region 17356
Cpgi11529 2 32846115 to 32847612 1497 CpG island CpG island 11529
Gm13524 2 32846186 to 32848168 1982 + antisense lncRNA gene predicted gene 13524
Tssr23568 2 32847199 to 32847214 15 - TSS region transcription start site region 23568
Tssr23569 2 32847231 to 32847242 11 - TSS region transcription start site region 23569
Tssr23570 2 32847247 to 32847258 11 - TSS region transcription start site region 23570
Tssr23571 2 32847272 to 32847288 16 - TSS region transcription start site region 23571
Cpgi11530 2 32852175 to 32852525 350 CpG island CpG island 11530
Gm13523 2 32873755 to 32876001 2246 - antisense lncRNA gene predicted gene 13523
Cpgi11531 2 32875621 to 32876974 1353 CpG island CpG island 11531
Tssr17357 2 32875855 to 32875875 20 + TSS region transcription start site region 17357
Tssr23572 2 32876030 to 32876059 29 - TSS region transcription start site region 23572
Fam129b 2 32876134 to 32925253 49119 + protein coding gene family with sequence similarity 129, member B
Tssr17358 2 32876136 to 32876241 105 + TSS region transcription start site region 17358
Tssr17359 2 32877948 to 32877978 30 + TSS region transcription start site region 17359
Tssr17360 2 32878043 to 32878051 8 + TSS region transcription start site region 17360
D130056L21Rik 2 32885617 to 32887857 2240 unclassified gene RIKEN cDNA D130056L21 gene
Tssr17361 2 32887389 to 32887414 25 + TSS region transcription start site region 17361
Tssr17362 2 32894558 to 32894563 5 + TSS region transcription start site region 17362
Tssr17363 2 32897876 to 32897883 7 + TSS region transcription start site region 17363
D2Mit235 2 32898460 to 32898579 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 235
Tssr17364 2 32901797 to 32901846 49 + TSS region transcription start site region 17364
Tssr17365 2 32911382 to 32911405 23 + TSS region transcription start site region 17365
Cpgi11532 2 32912423 to 32912727 304 CpG island CpG island 11532
Tssr17366 2 32912478 to 32912518 40 + TSS region transcription start site region 17366
Tssr17367 2 32916409 to 32916419 10 + TSS region transcription start site region 17367
Tssr17368 2 32916453 to 32916482 29 + TSS region transcription start site region 17368
Tssr17369 2 32916531 to 32916538 7 + TSS region transcription start site region 17369
Tssr17370 2 32916582 to 32916628 46 + TSS region transcription start site region 17370
Tssr17371 2 32916639 to 32916659 20 + TSS region transcription start site region 17371
Tssr17372 2 32924505 to 32924527 22 + TSS region transcription start site region 17372
Lrsam1 2 32925216 to 32961614 36398 - protein coding gene leucine rich repeat and sterile alpha motif containing 1
Tssr23573 2 32929742 to 32929767 25 - TSS region transcription start site region 23573
Tssr23574 2 32929788 to 32929796 8 - TSS region transcription start site region 23574
Cpgi11533 2 32961359 to 32962514 1155 CpG island CpG island 11533
Tssr23575 2 32961594 to 32961620 26 - TSS region transcription start site region 23575
Tssr23576 2 32961635 to 32961646 11 - TSS region transcription start site region 23576
Tssr17373 2 32961665 to 32961692 27 + TSS region transcription start site region 17373
Tssr17374 2 32961701 to 32961714 13 + TSS region transcription start site region 17374
Rpl12 2 32961712 to 32964045 2333 + protein coding gene ribosomal protein L12
Snora65 2 32963301 to 32963418 117 + snoRNA gene small nucleolar RNA, H/ACA box 65
Cpgi11534 2 32966526 to 32967550 1024 CpG island CpG island 11534
Tssr23577 2 32966874 to 32966894 20 - TSS region transcription start site region 23577
Tssr17375 2 32966944 to 32966976 32 + TSS region transcription start site region 17375
Tssr470 2 32966982 to 32966994 12 + TSS region transcription start site region 470
Tssr17376 2 32966997 to 32967009 12 + TSS region transcription start site region 17376
Slc2a8 2 32972990 to 32982083 9093 - protein coding gene solute carrier family 2, (facilitated glucose transporter), member 8
Tssr471 2 32978144 to 32978146 2 + TSS region transcription start site region 471
Cpgi11535 2 32981238 to 32982288 1050 CpG island CpG island 11535
Tssr23578 2 32982007 to 32982086 79 - TSS region transcription start site region 23578
Tssr23579 2 32982147 to 32982166 19 - TSS region transcription start site region 23579
Tssr23580 2 32982173 to 32982185 12 - TSS region transcription start site region 23580
Garnl3 2 32986224 to 33131654 145430 - protein coding gene GTPase activating RANGAP domain-like 3
Gm38299 2 32998527 to 33002315 3788 - unclassified gene predicted gene, 38299
Tssr23581 2 33086204 to 33086215 11 - TSS region transcription start site region 23581
Tssr23582 2 33086229 to 33086241 12 - TSS region transcription start site region 23582
Tssr23583 2 33086253 to 33086264 11 - TSS region transcription start site region 23583
Tssr23584 2 33086267 to 33086284 17 - TSS region transcription start site region 23584
Tssr23585 2 33086430 to 33086447 17 - TSS region transcription start site region 23585
Tssr23586 2 33087169 to 33087207 38 - TSS region transcription start site region 23586
Cpgi11536 2 33129834 to 33131748 1914 CpG island CpG island 11536
Tssr23587 2 33130221 to 33130251 30 - TSS region transcription start site region 23587
Tssr23588 2 33130466 to 33130479 13 - TSS region transcription start site region 23588
Tssr23589 2 33130565 to 33130620 55 - TSS region transcription start site region 23589
Tssr17377 2 33130889 to 33130899 10 + TSS region transcription start site region 17377
Tssr23590 2 33131645 to 33131658 13 - TSS region transcription start site region 23590
Tssr23591 2 33131676 to 33131695 19 - TSS region transcription start site region 23591
Gm33536 2 33131709 to 33132961 1252 + lncRNA gene predicted gene, 33536
Ralgps1 2 33133417 to 33371486 238069 - protein coding gene Ral GEF with PH domain and SH3 binding motif 1
Tssr17378 2 33176784 to 33176806 22 + TSS region transcription start site region 17378
Tssr17379 2 33177888 to 33177917 29 + TSS region transcription start site region 17379
Gm13528 2 33177902 to 33181881 3979 + antisense lncRNA gene predicted gene 13528
Tssr17380 2 33207021 to 33207029 8 + TSS region transcription start site region 17380
Gm23546 2 33211805 to 33211941 136 - snoRNA gene predicted gene, 23546
Tssr17381 2 33216010 to 33216021 11 + TSS region transcription start site region 17381
Tssr17382 2 33216023 to 33216034 11 + TSS region transcription start site region 17382
Tssr17383 2 33216051 to 33216084 33 + TSS region transcription start site region 17383
Angptl2 2 33216069 to 33247717 31648 + protein coding gene angiopoietin-like 2
Tssr17384 2 33216090 to 33216106 16 + TSS region transcription start site region 17384
Tssr17385 2 33216109 to 33216124 15 + TSS region transcription start site region 17385
Tssr17386 2 33228355 to 33228366 11 + TSS region transcription start site region 17386
Tssr17387 2 33228843 to 33228857 14 + TSS region transcription start site region 17387
Tssr23592 2 33260906 to 33260926 20 - TSS region transcription start site region 23592
Tssr23593 2 33260931 to 33260957 26 - TSS region transcription start site region 23593
Tssr23594 2 33304840 to 33304847 7 - TSS region transcription start site region 23594
Gm13537 2 33323171 to 33323437 266 + pseudogene predicted gene 13537
Tssr23595 2 33336902 to 33336909 7 - TSS region transcription start site region 23595
Tssr23596 2 33353587 to 33353608 21 - TSS region transcription start site region 23596
Tssr472 2 33353625 to 33353636 11 - TSS region transcription start site region 472
Gm25998 2 33362994 to 33363046 52 - miRNA gene predicted gene, 25998
Cpgi11537 2 33370652 to 33371790 1138 CpG island CpG island 11537
Tssr23597 2 33371382 to 33371389 7 - TSS region transcription start site region 23597
Tssr23598 2 33371400 to 33371484 84 - TSS region transcription start site region 23598
Tssr23599 2 33371486 to 33371499 13 - TSS region transcription start site region 23599
Zbtb34 2 33406108 to 33431324 25216 - protein coding gene zinc finger and BTB domain containing 34
Cpgi11538 2 33430492 to 33431679 1187 CpG island CpG island 11538
Tssr23600 2 33431294 to 33431347 53 - TSS region transcription start site region 23600
Tssr17388 2 33431380 to 33431408 28 + TSS region transcription start site region 17388
Tssr23601 2 33439621 to 33439665 44 - TSS region transcription start site region 23601
Tssr17389 2 33446764 to 33446777 13 + TSS region transcription start site region 17389
Gm13536 2 33446802 to 33449207 2405 + antisense lncRNA gene predicted gene 13536