Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:32593460-33203579

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
St6galnac4 2 32587095 to 32599698 12603 + protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
Gm23369 2 32593469 to 32593573 104 - snRNA gene predicted gene, 23369
Cpgi11517 2 32597004 to 32597281 277 CpG island CpG island 11517
Tssr17310 2 32599698 to 32599726 28 + TSS region transcription start site region 17310
St6galnac6 2 32599709 to 32620806 21097 + protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Cpgi11518 2 32606748 to 32608385 1637 CpG island CpG island 11518
Tssr17311 2 32606946 to 32606973 27 + TSS region transcription start site region 17311
Tssr17312 2 32606979 to 32607057 78 + TSS region transcription start site region 17312
Tssr467 2 32608664 to 32608686 22 + TSS region transcription start site region 467
Tssr17313 2 32608704 to 32608717 13 + TSS region transcription start site region 17313
Tssr17314 2 32608985 to 32609033 48 + TSS region transcription start site region 17314
Tssr17315 2 32609047 to 32609084 37 + TSS region transcription start site region 17315
Cpgi11519 2 32612270 to 32612606 336 CpG island CpG island 11519
Cpgi11520 2 32615023 to 32615208 185 CpG island CpG island 11520
Tssr17316 2 32616171 to 32616174 3 + TSS region transcription start site region 17316
Tssr17317 2 32621529 to 32621553 24 + TSS region transcription start site region 17317
Tssr17318 2 32621750 to 32621774 24 + TSS region transcription start site region 17318
Ak1 2 32621758 to 32635058 13300 + protein coding gene adenylate kinase 1
Tssr17319 2 32621781 to 32621798 17 + TSS region transcription start site region 17319
Tssr17320 2 32625431 to 32625442 11 + TSS region transcription start site region 17320
Tssr17321 2 32625444 to 32625495 51 + TSS region transcription start site region 17321
Tssr17322 2 32626852 to 32626861 9 + TSS region transcription start site region 17322
Tssr17323 2 32626867 to 32626879 12 + TSS region transcription start site region 17323
Tssr17324 2 32628412 to 32628415 3 + TSS region transcription start site region 17324
Tssr17325 2 32628418 to 32628462 44 + TSS region transcription start site region 17325
Tssr17326 2 32629301 to 32629308 7 + TSS region transcription start site region 17326
Tssr17327 2 32629467 to 32629514 47 + TSS region transcription start site region 17327
Tssr17328 2 32629517 to 32629540 23 + TSS region transcription start site region 17328
Tssr17329 2 32629773 to 32629803 30 + TSS region transcription start site region 17329
Tssr17330 2 32629826 to 32629850 24 + TSS region transcription start site region 17330
Tssr17331 2 32630319 to 32630331 12 + TSS region transcription start site region 17331
Tssr17332 2 32633720 to 32633746 26 + TSS region transcription start site region 17332
Tssr17333 2 32634203 to 32634218 15 + TSS region transcription start site region 17333
Tssr17334 2 32646531 to 32646541 10 + TSS region transcription start site region 17334
Tssr17335 2 32646586 to 32646602 16 + TSS region transcription start site region 17335
Eng 2 32646595 to 32682669 36074 + protein coding gene endoglin
Tssr17336 2 32646604 to 32646609 5 + TSS region transcription start site region 17336
Tssr17337 2 32646617 to 32646633 16 + TSS region transcription start site region 17337
Tssr17338 2 32646639 to 32646674 35 + TSS region transcription start site region 17338
Cpgi11521 2 32646734 to 32647001 267 CpG island CpG island 11521
Mir1954 2 32652329 to 32652414 85 + miRNA gene microRNA 1954
Tssr17339 2 32657498 to 32657509 11 + TSS region transcription start site region 17339
Tssr17340 2 32657600 to 32657613 13 + TSS region transcription start site region 17340
Gm47291 2 32675108 to 32675172 64 + miRNA gene predicted gene, 47291
Gm26236 2 32675109 to 32675245 136 + snoRNA gene predicted gene, 26236
D2Mit366 2 32677053 to 32677144 91 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 366
Tssr17341 2 32680266 to 32680300 34 + TSS region transcription start site region 17341
Fpgs 2 32682609 to 32704145 21536 - protein coding gene folylpolyglutamyl synthetase
Mir8093 2 32687630 to 32687766 136 - miRNA gene microRNA 8093
Cpgi11522 2 32693612 to 32694365 753 CpG island CpG island 11522
Tssr23530 2 32694099 to 32694106 7 - TSS region transcription start site region 23530
Tssr23531 2 32694120 to 32694176 56 - TSS region transcription start site region 23531
Tssr23532 2 32704123 to 32704139 16 - TSS region transcription start site region 23532
Tssr23533 2 32704144 to 32704157 13 - TSS region transcription start site region 23533
Cdk9 2 32705782 to 32712784 7002 - protein coding gene cyclin-dependent kinase 9 (CDC2-related kinase)
Cpgi11523 2 32711999 to 32713870 1871 CpG island CpG island 11523
Tssr23534 2 32712234 to 32712276 42 - TSS region transcription start site region 23534
Tssr23535 2 32712728 to 32712793 65 - TSS region transcription start site region 23535
Mir2861 2 32712807 to 32712888 81 - miRNA gene microRNA 2861
Mir3960 2 32712900 to 32712972 72 - miRNA gene microRNA 3960
Tssr23536 2 32713042 to 32713062 20 - TSS region transcription start site region 23536
Tssr23537 2 32713065 to 32713091 26 - TSS region transcription start site region 23537
Tssr23538 2 32713220 to 32713251 31 - TSS region transcription start site region 23538
Tssr468 2 32713475 to 32713488 13 + TSS region transcription start site region 468
Gm33457 2 32713550 to 32720787 7237 + lncRNA gene predicted gene, 33457
Tssr23539 2 32713553 to 32713577 24 - TSS region transcription start site region 23539
Tssr23540 2 32714486 to 32714525 39 - TSS region transcription start site region 23540
Tssr23541 2 32714923 to 32714942 19 - TSS region transcription start site region 23541
Tssr23542 2 32714952 to 32714957 5 - TSS region transcription start site region 23542
Tssr17342 2 32715089 to 32715112 23 + TSS region transcription start site region 17342
Tssr469 2 32715391 to 32715401 10 + TSS region transcription start site region 469
Tssr17343 2 32715415 to 32715427 12 + TSS region transcription start site region 17343
Tssr23543 2 32716662 to 32716665 3 - TSS region transcription start site region 23543
Tssr23544 2 32716682 to 32716687 5 - TSS region transcription start site region 23544
Tssr23545 2 32716689 to 32716704 15 - TSS region transcription start site region 23545
Tssr23546 2 32716738 to 32716759 21 - TSS region transcription start site region 23546
Tssr23547 2 32716769 to 32716778 9 - TSS region transcription start site region 23547
Tssr17344 2 32719561 to 32719609 48 + TSS region transcription start site region 17344
Sh2d3c 2 32721055 to 32755007 33952 + protein coding gene SH2 domain containing 3C
Tssr17345 2 32721080 to 32721108 28 + TSS region transcription start site region 17345
Tssr17346 2 32721109 to 32721140 31 + TSS region transcription start site region 17346
Cpgi11524 2 32727608 to 32727789 181 CpG island CpG island 11524
Tssr17347 2 32727682 to 32727712 30 + TSS region transcription start site region 17347
6330409D20Rik 2 32732620 to 32741016 8396 - protein coding gene RIKEN cDNA 6330409D20 gene
Tssr17348 2 32737358 to 32737389 31 + TSS region transcription start site region 17348
Cpgi11525 2 32741207 to 32742594 1387 CpG island CpG island 11525
Tssr17349 2 32741438 to 32741447 9 + TSS region transcription start site region 17349
Tssr17350 2 32741452 to 32741499 47 + TSS region transcription start site region 17350
Tssr23548 2 32742402 to 32742410 8 - TSS region transcription start site region 23548
Cpgi11526 2 32751029 to 32751683 654 CpG island CpG island 11526
Tssr17351 2 32751567 to 32751583 16 + TSS region transcription start site region 17351
Ttc16 2 32757026 to 32775633 18607 - protein coding gene tetratricopeptide repeat domain 16
Cpgi11527 2 32757033 to 32757867 834 CpG island CpG island 11527
Tor2a 2 32757234 to 32762244 5010 + protein coding gene torsin family 2, member A
Tssr17352 2 32757237 to 32757299 62 + TSS region transcription start site region 17352
Tssr23549 2 32771959 to 32771974 15 - TSS region transcription start site region 23549
Tssr23550 2 32775357 to 32775377 20 - TSS region transcription start site region 23550
Cpgi11528 2 32775376 to 32776592 1216 CpG island CpG island 11528
Tssr23551 2 32775378 to 32775398 20 - TSS region transcription start site region 23551
Tssr23552 2 32775405 to 32775413 8 - TSS region transcription start site region 23552
Tssr23553 2 32775595 to 32775619 24 - TSS region transcription start site region 23553
Tssr23554 2 32775625 to 32775649 24 - TSS region transcription start site region 23554
Tssr17353 2 32775769 to 32775791 22 + TSS region transcription start site region 17353
Ptrh1 2 32775786 to 32777597 1811 + protein coding gene peptidyl-tRNA hydrolase 1 homolog
Tssr17354 2 32775808 to 32775829 21 + TSS region transcription start site region 17354
Tssr17355 2 32775841 to 32775851 10 + TSS region transcription start site region 17355
Cfap157 2 32777413 to 32784405 6992 - protein coding gene cilia and flagella associated protein 157
Tssr23555 2 32784424 to 32784446 22 - TSS region transcription start site region 23555
Stxbp1 2 32787607 to 32847237 59630 - protein coding gene syntaxin binding protein 1
Tssr23556 2 32788285 to 32788294 9 - TSS region transcription start site region 23556
Tssr23557 2 32788328 to 32788348 20 - TSS region transcription start site region 23557
Tssr23558 2 32788420 to 32788443 23 - TSS region transcription start site region 23558
Tssr23559 2 32788710 to 32788731 21 - TSS region transcription start site region 23559
Tssr23560 2 32788732 to 32788767 35 - TSS region transcription start site region 23560
Tssr23561 2 32789465 to 32789474 9 - TSS region transcription start site region 23561
Tssr23562 2 32789498 to 32789508 10 - TSS region transcription start site region 23562
Tssr23563 2 32789522 to 32789543 21 - TSS region transcription start site region 23563
Tssr23564 2 32796079 to 32796091 12 - TSS region transcription start site region 23564
Tssr23565 2 32823173 to 32823200 27 - TSS region transcription start site region 23565
Tssr23566 2 32824958 to 32824962 4 - TSS region transcription start site region 23566
Tssr23567 2 32829396 to 32829418 22 - TSS region transcription start site region 23567
Gm24165 2 32831989 to 32832116 127 + snoRNA gene predicted gene, 24165
Tssr17356 2 32845917 to 32845942 25 + TSS region transcription start site region 17356
Cpgi11529 2 32846115 to 32847612 1497 CpG island CpG island 11529
Gm13524 2 32846186 to 32848168 1982 + antisense lncRNA gene predicted gene 13524
Tssr23568 2 32847199 to 32847214 15 - TSS region transcription start site region 23568
Tssr23569 2 32847231 to 32847242 11 - TSS region transcription start site region 23569
Tssr23570 2 32847247 to 32847258 11 - TSS region transcription start site region 23570
Tssr23571 2 32847272 to 32847288 16 - TSS region transcription start site region 23571
Cpgi11530 2 32852175 to 32852525 350 CpG island CpG island 11530
Gm13523 2 32873755 to 32876001 2246 - antisense lncRNA gene predicted gene 13523
Cpgi11531 2 32875621 to 32876974 1353 CpG island CpG island 11531
Tssr17357 2 32875855 to 32875875 20 + TSS region transcription start site region 17357
Tssr23572 2 32876030 to 32876059 29 - TSS region transcription start site region 23572
Fam129b 2 32876134 to 32925253 49119 + protein coding gene family with sequence similarity 129, member B
Tssr17358 2 32876136 to 32876241 105 + TSS region transcription start site region 17358
Tssr17359 2 32877948 to 32877978 30 + TSS region transcription start site region 17359
Tssr17360 2 32878043 to 32878051 8 + TSS region transcription start site region 17360
D130056L21Rik 2 32885617 to 32887857 2240 unclassified gene RIKEN cDNA D130056L21 gene
Tssr17361 2 32887389 to 32887414 25 + TSS region transcription start site region 17361
Tssr17362 2 32894558 to 32894563 5 + TSS region transcription start site region 17362
Tssr17363 2 32897876 to 32897883 7 + TSS region transcription start site region 17363
D2Mit235 2 32898460 to 32898579 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 235
Tssr17364 2 32901797 to 32901846 49 + TSS region transcription start site region 17364
Tssr17365 2 32911382 to 32911405 23 + TSS region transcription start site region 17365
Cpgi11532 2 32912423 to 32912727 304 CpG island CpG island 11532
Tssr17366 2 32912478 to 32912518 40 + TSS region transcription start site region 17366
Tssr17367 2 32916409 to 32916419 10 + TSS region transcription start site region 17367
Tssr17368 2 32916453 to 32916482 29 + TSS region transcription start site region 17368
Tssr17369 2 32916531 to 32916538 7 + TSS region transcription start site region 17369
Tssr17370 2 32916582 to 32916628 46 + TSS region transcription start site region 17370
Tssr17371 2 32916639 to 32916659 20 + TSS region transcription start site region 17371
Tssr17372 2 32924505 to 32924527 22 + TSS region transcription start site region 17372
Lrsam1 2 32925216 to 32961614 36398 - protein coding gene leucine rich repeat and sterile alpha motif containing 1
Tssr23573 2 32929742 to 32929767 25 - TSS region transcription start site region 23573
Tssr23574 2 32929788 to 32929796 8 - TSS region transcription start site region 23574
Cpgi11533 2 32961359 to 32962514 1155 CpG island CpG island 11533
Tssr23575 2 32961594 to 32961620 26 - TSS region transcription start site region 23575
Tssr23576 2 32961635 to 32961646 11 - TSS region transcription start site region 23576
Tssr17373 2 32961665 to 32961692 27 + TSS region transcription start site region 17373
Tssr17374 2 32961701 to 32961714 13 + TSS region transcription start site region 17374
Rpl12 2 32961712 to 32964045 2333 + protein coding gene ribosomal protein L12
Snora65 2 32963301 to 32963418 117 + snoRNA gene small nucleolar RNA, H/ACA box 65
Cpgi11534 2 32966526 to 32967550 1024 CpG island CpG island 11534
Tssr23577 2 32966874 to 32966894 20 - TSS region transcription start site region 23577
Tssr17375 2 32966944 to 32966976 32 + TSS region transcription start site region 17375
Tssr470 2 32966982 to 32966994 12 + TSS region transcription start site region 470
Tssr17376 2 32966997 to 32967009 12 + TSS region transcription start site region 17376
Slc2a8 2 32972990 to 32982083 9093 - protein coding gene solute carrier family 2, (facilitated glucose transporter), member 8
Tssr471 2 32978144 to 32978146 2 + TSS region transcription start site region 471
Cpgi11535 2 32981238 to 32982288 1050 CpG island CpG island 11535
Tssr23578 2 32982007 to 32982086 79 - TSS region transcription start site region 23578
Tssr23579 2 32982147 to 32982166 19 - TSS region transcription start site region 23579
Tssr23580 2 32982173 to 32982185 12 - TSS region transcription start site region 23580
Garnl3 2 32986224 to 33131654 145430 - protein coding gene GTPase activating RANGAP domain-like 3
Gm38299 2 32998527 to 33002315 3788 - unclassified gene predicted gene, 38299
Tssr23581 2 33086204 to 33086215 11 - TSS region transcription start site region 23581
Tssr23582 2 33086229 to 33086241 12 - TSS region transcription start site region 23582
Tssr23583 2 33086253 to 33086264 11 - TSS region transcription start site region 23583
Tssr23584 2 33086267 to 33086284 17 - TSS region transcription start site region 23584
Tssr23585 2 33086430 to 33086447 17 - TSS region transcription start site region 23585
Tssr23586 2 33087169 to 33087207 38 - TSS region transcription start site region 23586
Cpgi11536 2 33129834 to 33131748 1914 CpG island CpG island 11536
Tssr23587 2 33130221 to 33130251 30 - TSS region transcription start site region 23587
Tssr23588 2 33130466 to 33130479 13 - TSS region transcription start site region 23588
Tssr23589 2 33130565 to 33130620 55 - TSS region transcription start site region 23589
Tssr17377 2 33130889 to 33130899 10 + TSS region transcription start site region 17377
Tssr23590 2 33131645 to 33131658 13 - TSS region transcription start site region 23590
Tssr23591 2 33131676 to 33131695 19 - TSS region transcription start site region 23591
Gm33536 2 33131709 to 33132961 1252 + lncRNA gene predicted gene, 33536
Ralgps1 2 33133417 to 33371486 238069 - protein coding gene Ral GEF with PH domain and SH3 binding motif 1
Tssr17378 2 33176784 to 33176806 22 + TSS region transcription start site region 17378
Tssr17379 2 33177888 to 33177917 29 + TSS region transcription start site region 17379
Gm13528 2 33177902 to 33181881 3979 + antisense lncRNA gene predicted gene 13528