Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:32386080-33056108

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254 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lcn2 2 32384637 to 32387739 3102 - protein coding gene lipocalin 2
Tssr23509 2 32386084 to 32386093 9 - TSS region transcription start site region 23509
Tssr463 2 32387027 to 32387065 38 + TSS region transcription start site region 463
Tssr23510 2 32387055 to 32387065 10 - TSS region transcription start site region 23510
Tssr464 2 32387067 to 32387085 18 + TSS region transcription start site region 464
Tssr23511 2 32387081 to 32387105 24 - TSS region transcription start site region 23511
Tssr17277 2 32387113 to 32387124 11 + TSS region transcription start site region 17277
Tssr23512 2 32387133 to 32387163 30 - TSS region transcription start site region 23512
Tssr23513 2 32387760 to 32387778 18 - TSS region transcription start site region 23513
Tssr23514 2 32388091 to 32388096 5 - TSS region transcription start site region 23514
Tssr23515 2 32388222 to 32388254 32 - TSS region transcription start site region 23515
Tssr23516 2 32393140 to 32393174 34 - TSS region transcription start site region 23516
Cpgi11509 2 32395403 to 32396962 1559 CpG island CpG island 11509
Tssr17278 2 32395667 to 32395679 12 + TSS region transcription start site region 17278
Ptges2 2 32395890 to 32402740 6850 + protein coding gene prostaglandin E synthase 2
Tssr17279 2 32396226 to 32396250 24 + TSS region transcription start site region 17279
Tssr17280 2 32396254 to 32396280 26 + TSS region transcription start site region 17280
Gm13413 2 32406055 to 32406656 601 + pseudogene predicted gene 13413
Tssr23517 2 32409218 to 32409237 19 - TSS region transcription start site region 23517
Slc25a25 2 32414487 to 32451445 36958 - protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
Tssr17281 2 32423750 to 32423773 23 + TSS region transcription start site region 17281
Tssr23518 2 32424007 to 32424029 22 - TSS region transcription start site region 23518
Tssr23519 2 32424044 to 32424055 11 - TSS region transcription start site region 23519
Tssr23520 2 32424057 to 32424079 22 - TSS region transcription start site region 23520
Tssr23521 2 32431115 to 32431178 63 - TSS region transcription start site region 23521
Tssr17282 2 32450444 to 32450462 18 + TSS region transcription start site region 17282
Naif1 2 32450457 to 32455476 5019 + protein coding gene nuclear apoptosis inducing factor 1
Cpgi11510 2 32450579 to 32452562 1983 CpG island CpG island 11510
Tssr17283 2 32451089 to 32451090 1 + TSS region transcription start site region 17283
Tssr23522 2 32451368 to 32451379 11 - TSS region transcription start site region 23522
Tssr23523 2 32451396 to 32451470 74 - TSS region transcription start site region 23523
Tssr17284 2 32452174 to 32452231 57 + TSS region transcription start site region 17284
Tssr17285 2 32452308 to 32452317 9 + TSS region transcription start site region 17285
Tssr23524 2 32453184 to 32453190 6 - TSS region transcription start site region 23524
Tssr17286 2 32456090 to 32456103 13 + TSS region transcription start site region 17286
Gm37169 2 32487988 to 32492148 4160 + unclassified gene predicted gene, 37169
Tssr465 2 32493400 to 32493407 7 - TSS region transcription start site region 465
Tssr23525 2 32493415 to 32493438 23 - TSS region transcription start site region 23525
Tssr17287 2 32493518 to 32493559 41 + TSS region transcription start site region 17287
Tssr17288 2 32493616 to 32493622 6 + TSS region transcription start site region 17288
Tssr17289 2 32493631 to 32493647 16 + TSS region transcription start site region 17289
Tssr17290 2 32493664 to 32493673 9 + TSS region transcription start site region 17290
Tssr23526 2 32495300 to 32495324 24 - TSS region transcription start site region 23526
Cpgi11511 2 32495530 to 32495692 162 CpG island CpG island 11511
D2Mit179 2 32496986 to 32497127 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 179
Tssr17291 2 32525013 to 32525037 24 + TSS region transcription start site region 17291
Gm13412 2 32525031 to 32527990 2959 + lincRNA gene predicted gene 13412
Tssr17292 2 32534586 to 32534602 16 + TSS region transcription start site region 17292
Cpgi11512 2 32534728 to 32536320 1592 CpG island CpG island 11512
Tssr17293 2 32535282 to 32535290 8 + TSS region transcription start site region 17293
Tssr17294 2 32535315 to 32535347 32 + TSS region transcription start site region 17294
Fam102a 2 32535359 to 32569750 34391 + protein coding gene family with sequence similarity 102, member A
Tssr17295 2 32535396 to 32535405 9 + TSS region transcription start site region 17295
Tssr17296 2 32535724 to 32535739 15 + TSS region transcription start site region 17296
Tssr17297 2 32536048 to 32536055 7 + TSS region transcription start site region 17297
Tssr17298 2 32565747 to 32565775 28 + TSS region transcription start site region 17298
Tssr23527 2 32567632 to 32567669 37 - TSS region transcription start site region 23527
Tssr17299 2 32567730 to 32567770 40 + TSS region transcription start site region 17299
Tssr23528 2 32567741 to 32567751 10 - TSS region transcription start site region 23528
Tssr17300 2 32567799 to 32567811 12 + TSS region transcription start site region 17300
Tssr17301 2 32567932 to 32567945 13 + TSS region transcription start site region 17301
Cpgi11513 2 32570699 to 32571274 575 CpG island CpG island 11513
Tssr17302 2 32570839 to 32570852 13 + TSS region transcription start site region 17302
Dpm2 2 32570858 to 32573571 2713 + protein coding gene dolichol-phosphate (beta-D) mannosyltransferase 2
Tssr17303 2 32570861 to 32570913 52 + TSS region transcription start site region 17303
Tssr17304 2 32572336 to 32572362 26 + TSS region transcription start site region 17304
9430097D07Rik 2 32574183 to 32575605 1422 - unclassified gene RIKEN cDNA 9430097D07 gene
Pip5kl1 2 32575163 to 32583782 8619 + protein coding gene phosphatidylinositol-4-phosphate 5-kinase-like 1
Cpgi11514 2 32575296 to 32576018 722 CpG island CpG island 11514
Tssr17305 2 32575836 to 32575848 12 + TSS region transcription start site region 17305
Tssr23529 2 32576260 to 32576265 5 - TSS region transcription start site region 23529
Tssr17306 2 32576399 to 32576403 4 + TSS region transcription start site region 17306
Cpgi11515 2 32583226 to 32583652 426 CpG island CpG island 11515
Cpgi11516 2 32586869 to 32587486 617 CpG island CpG island 11516
Tssr466 2 32587049 to 32587056 7 + TSS region transcription start site region 466
Tssr17307 2 32587057 to 32587123 66 + TSS region transcription start site region 17307
St6galnac4 2 32587095 to 32599698 12603 + protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
Tssr17308 2 32587159 to 32587176 17 + TSS region transcription start site region 17308
Tssr17309 2 32587280 to 32587310 30 + TSS region transcription start site region 17309
Gm23369 2 32593469 to 32593573 104 - snRNA gene predicted gene, 23369
Cpgi11517 2 32597004 to 32597281 277 CpG island CpG island 11517
Tssr17310 2 32599698 to 32599726 28 + TSS region transcription start site region 17310
St6galnac6 2 32599709 to 32620806 21097 + protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Cpgi11518 2 32606748 to 32608385 1637 CpG island CpG island 11518
Tssr17311 2 32606946 to 32606973 27 + TSS region transcription start site region 17311
Tssr17312 2 32606979 to 32607057 78 + TSS region transcription start site region 17312
Tssr467 2 32608664 to 32608686 22 + TSS region transcription start site region 467
Tssr17313 2 32608704 to 32608717 13 + TSS region transcription start site region 17313
Tssr17314 2 32608985 to 32609033 48 + TSS region transcription start site region 17314
Tssr17315 2 32609047 to 32609084 37 + TSS region transcription start site region 17315
Cpgi11519 2 32612270 to 32612606 336 CpG island CpG island 11519
Cpgi11520 2 32615023 to 32615208 185 CpG island CpG island 11520
Tssr17316 2 32616171 to 32616174 3 + TSS region transcription start site region 17316
Tssr17317 2 32621529 to 32621553 24 + TSS region transcription start site region 17317
Tssr17318 2 32621750 to 32621774 24 + TSS region transcription start site region 17318
Ak1 2 32621758 to 32635058 13300 + protein coding gene adenylate kinase 1
Tssr17319 2 32621781 to 32621798 17 + TSS region transcription start site region 17319
Tssr17320 2 32625431 to 32625442 11 + TSS region transcription start site region 17320
Tssr17321 2 32625444 to 32625495 51 + TSS region transcription start site region 17321
Tssr17322 2 32626852 to 32626861 9 + TSS region transcription start site region 17322
Tssr17323 2 32626867 to 32626879 12 + TSS region transcription start site region 17323
Tssr17324 2 32628412 to 32628415 3 + TSS region transcription start site region 17324
Tssr17325 2 32628418 to 32628462 44 + TSS region transcription start site region 17325
Tssr17326 2 32629301 to 32629308 7 + TSS region transcription start site region 17326
Tssr17327 2 32629467 to 32629514 47 + TSS region transcription start site region 17327
Tssr17328 2 32629517 to 32629540 23 + TSS region transcription start site region 17328
Tssr17329 2 32629773 to 32629803 30 + TSS region transcription start site region 17329
Tssr17330 2 32629826 to 32629850 24 + TSS region transcription start site region 17330
Tssr17331 2 32630319 to 32630331 12 + TSS region transcription start site region 17331
Tssr17332 2 32633720 to 32633746 26 + TSS region transcription start site region 17332
Tssr17333 2 32634203 to 32634218 15 + TSS region transcription start site region 17333
Tssr17334 2 32646531 to 32646541 10 + TSS region transcription start site region 17334
Tssr17335 2 32646586 to 32646602 16 + TSS region transcription start site region 17335
Eng 2 32646595 to 32682669 36074 + protein coding gene endoglin
Tssr17336 2 32646604 to 32646609 5 + TSS region transcription start site region 17336
Tssr17337 2 32646617 to 32646633 16 + TSS region transcription start site region 17337
Tssr17338 2 32646639 to 32646674 35 + TSS region transcription start site region 17338
Cpgi11521 2 32646734 to 32647001 267 CpG island CpG island 11521
Mir1954 2 32652329 to 32652414 85 + miRNA gene microRNA 1954
Tssr17339 2 32657498 to 32657509 11 + TSS region transcription start site region 17339
Tssr17340 2 32657600 to 32657613 13 + TSS region transcription start site region 17340
Gm47291 2 32675108 to 32675172 64 + miRNA gene predicted gene, 47291
Gm26236 2 32675109 to 32675245 136 + snoRNA gene predicted gene, 26236
D2Mit366 2 32677053 to 32677144 91 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 366
Tssr17341 2 32680266 to 32680300 34 + TSS region transcription start site region 17341
Fpgs 2 32682609 to 32704145 21536 - protein coding gene folylpolyglutamyl synthetase
Mir8093 2 32687630 to 32687766 136 - miRNA gene microRNA 8093
Cpgi11522 2 32693612 to 32694365 753 CpG island CpG island 11522
Tssr23530 2 32694099 to 32694106 7 - TSS region transcription start site region 23530
Tssr23531 2 32694120 to 32694176 56 - TSS region transcription start site region 23531
Tssr23532 2 32704123 to 32704139 16 - TSS region transcription start site region 23532
Tssr23533 2 32704144 to 32704157 13 - TSS region transcription start site region 23533
Cdk9 2 32705782 to 32712784 7002 - protein coding gene cyclin-dependent kinase 9 (CDC2-related kinase)
Cpgi11523 2 32711999 to 32713870 1871 CpG island CpG island 11523
Tssr23534 2 32712234 to 32712276 42 - TSS region transcription start site region 23534
Tssr23535 2 32712728 to 32712793 65 - TSS region transcription start site region 23535
Mir2861 2 32712807 to 32712888 81 - miRNA gene microRNA 2861
Mir3960 2 32712900 to 32712972 72 - miRNA gene microRNA 3960
Tssr23536 2 32713042 to 32713062 20 - TSS region transcription start site region 23536
Tssr23537 2 32713065 to 32713091 26 - TSS region transcription start site region 23537
Tssr23538 2 32713220 to 32713251 31 - TSS region transcription start site region 23538
Tssr468 2 32713475 to 32713488 13 + TSS region transcription start site region 468
Gm33457 2 32713550 to 32720787 7237 + lncRNA gene predicted gene, 33457
Tssr23539 2 32713553 to 32713577 24 - TSS region transcription start site region 23539
Tssr23540 2 32714486 to 32714525 39 - TSS region transcription start site region 23540
Tssr23541 2 32714923 to 32714942 19 - TSS region transcription start site region 23541
Tssr23542 2 32714952 to 32714957 5 - TSS region transcription start site region 23542
Tssr17342 2 32715089 to 32715112 23 + TSS region transcription start site region 17342
Tssr469 2 32715391 to 32715401 10 + TSS region transcription start site region 469
Tssr17343 2 32715415 to 32715427 12 + TSS region transcription start site region 17343
Tssr23543 2 32716662 to 32716665 3 - TSS region transcription start site region 23543
Tssr23544 2 32716682 to 32716687 5 - TSS region transcription start site region 23544
Tssr23545 2 32716689 to 32716704 15 - TSS region transcription start site region 23545
Tssr23546 2 32716738 to 32716759 21 - TSS region transcription start site region 23546
Tssr23547 2 32716769 to 32716778 9 - TSS region transcription start site region 23547
Tssr17344 2 32719561 to 32719609 48 + TSS region transcription start site region 17344
Sh2d3c 2 32721055 to 32755007 33952 + protein coding gene SH2 domain containing 3C
Tssr17345 2 32721080 to 32721108 28 + TSS region transcription start site region 17345
Tssr17346 2 32721109 to 32721140 31 + TSS region transcription start site region 17346
Cpgi11524 2 32727608 to 32727789 181 CpG island CpG island 11524
Tssr17347 2 32727682 to 32727712 30 + TSS region transcription start site region 17347
6330409D20Rik 2 32732620 to 32741016 8396 - protein coding gene RIKEN cDNA 6330409D20 gene
Tssr17348 2 32737358 to 32737389 31 + TSS region transcription start site region 17348
Cpgi11525 2 32741207 to 32742594 1387 CpG island CpG island 11525
Tssr17349 2 32741438 to 32741447 9 + TSS region transcription start site region 17349
Tssr17350 2 32741452 to 32741499 47 + TSS region transcription start site region 17350
Tssr23548 2 32742402 to 32742410 8 - TSS region transcription start site region 23548
Cpgi11526 2 32751029 to 32751683 654 CpG island CpG island 11526
Tssr17351 2 32751567 to 32751583 16 + TSS region transcription start site region 17351
Ttc16 2 32757026 to 32775633 18607 - protein coding gene tetratricopeptide repeat domain 16
Cpgi11527 2 32757033 to 32757867 834 CpG island CpG island 11527
Tor2a 2 32757234 to 32762244 5010 + protein coding gene torsin family 2, member A
Tssr17352 2 32757237 to 32757299 62 + TSS region transcription start site region 17352
Tssr23549 2 32771959 to 32771974 15 - TSS region transcription start site region 23549
Tssr23550 2 32775357 to 32775377 20 - TSS region transcription start site region 23550
Cpgi11528 2 32775376 to 32776592 1216 CpG island CpG island 11528
Tssr23551 2 32775378 to 32775398 20 - TSS region transcription start site region 23551
Tssr23552 2 32775405 to 32775413 8 - TSS region transcription start site region 23552
Tssr23553 2 32775595 to 32775619 24 - TSS region transcription start site region 23553
Tssr23554 2 32775625 to 32775649 24 - TSS region transcription start site region 23554
Tssr17353 2 32775769 to 32775791 22 + TSS region transcription start site region 17353
Ptrh1 2 32775786 to 32777597 1811 + protein coding gene peptidyl-tRNA hydrolase 1 homolog
Tssr17354 2 32775808 to 32775829 21 + TSS region transcription start site region 17354
Tssr17355 2 32775841 to 32775851 10 + TSS region transcription start site region 17355
Cfap157 2 32777413 to 32784405 6992 - protein coding gene cilia and flagella associated protein 157
Tssr23555 2 32784424 to 32784446 22 - TSS region transcription start site region 23555
Stxbp1 2 32787607 to 32847237 59630 - protein coding gene syntaxin binding protein 1
Tssr23556 2 32788285 to 32788294 9 - TSS region transcription start site region 23556
Tssr23557 2 32788328 to 32788348 20 - TSS region transcription start site region 23557
Tssr23558 2 32788420 to 32788443 23 - TSS region transcription start site region 23558
Tssr23559 2 32788710 to 32788731 21 - TSS region transcription start site region 23559
Tssr23560 2 32788732 to 32788767 35 - TSS region transcription start site region 23560
Tssr23561 2 32789465 to 32789474 9 - TSS region transcription start site region 23561
Tssr23562 2 32789498 to 32789508 10 - TSS region transcription start site region 23562
Tssr23563 2 32789522 to 32789543 21 - TSS region transcription start site region 23563
Tssr23564 2 32796079 to 32796091 12 - TSS region transcription start site region 23564
Tssr23565 2 32823173 to 32823200 27 - TSS region transcription start site region 23565
Tssr23566 2 32824958 to 32824962 4 - TSS region transcription start site region 23566
Tssr23567 2 32829396 to 32829418 22 - TSS region transcription start site region 23567
Gm24165 2 32831989 to 32832116 127 + snoRNA gene predicted gene, 24165