Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:31286451-32083433

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ncs1 2 31245823 to 31295989 50166 + protein coding gene neuronal calcium sensor 1
Tssr17179 2 31293185 to 31293194 9 + TSS region transcription start site region 17179
Gm32866 2 31307613 to 31314488 6875 - lncRNA gene predicted gene, 32866
Cfq6 2 31313023 to 44618192 13305169 QTL conditioned fear QTL 6
Cpgi11469 2 31313962 to 31315034 1072 CpG island CpG island 11469
Tssr17180 2 31314278 to 31314287 9 + TSS region transcription start site region 17180
Tssr17181 2 31314303 to 31314376 73 + TSS region transcription start site region 17181
Hmcn2 2 31314415 to 31460738 146323 + protein coding gene hemicentin 2
Sbmd2 2 31324555 to 31324701 146 QTL spinal bone mineral density 2
D2Mit296 2 31324555 to 31324701 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 296
D2Mit64 2 31344757 to 31344930 173 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 64
D2Mit152 2 31401981 to 31402089 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 152
Cpgi11470 2 31425245 to 31425397 152 CpG island CpG island 11470
Tssr17182 2 31446326 to 31446365 39 + TSS region transcription start site region 17182
Tssr17183 2 31446760 to 31446775 15 + TSS region transcription start site region 17183
Tssr17184 2 31449891 to 31449899 8 + TSS region transcription start site region 17184
Tssr17185 2 31453787 to 31453800 13 + TSS region transcription start site region 17185
Tssr17186 2 31454451 to 31454468 17 + TSS region transcription start site region 17186
Tssr17187 2 31454478 to 31454556 78 + TSS region transcription start site region 17187
Tssr17188 2 31454769 to 31454788 19 + TSS region transcription start site region 17188
Cpgi11471 2 31459719 to 31460820 1101 CpG island CpG island 11471
Tssr23438 2 31460387 to 31460397 10 - TSS region transcription start site region 23438
Tssr23439 2 31460430 to 31460446 16 - TSS region transcription start site region 23439
Tssr17189 2 31462157 to 31462181 24 + TSS region transcription start site region 17189
Cpgi11472 2 31469779 to 31470831 1052 CpG island CpG island 11472
Tssr17190 2 31470240 to 31470247 7 + TSS region transcription start site region 17190
Tssr17191 2 31470254 to 31470282 28 + TSS region transcription start site region 17191
Ass1 2 31470270 to 31520670 50400 + protein coding gene argininosuccinate synthetase 1
Tssr17192 2 31470288 to 31470310 22 + TSS region transcription start site region 17192
Tssr23440 2 31470847 to 31470853 6 - TSS region transcription start site region 23440
Tssr17193 2 31476860 to 31476868 8 + TSS region transcription start site region 17193
Tssr23441 2 31481199 to 31481202 3 - TSS region transcription start site region 23441
Tssr17194 2 31486503 to 31486515 12 + TSS region transcription start site region 17194
Tssr17195 2 31489074 to 31489078 4 + TSS region transcription start site region 17195
Cpgi11473 2 31489197 to 31489398 201 CpG island CpG island 11473
Tssr17196 2 31492315 to 31492338 23 + TSS region transcription start site region 17196
Tssr23442 2 31492342 to 31492365 23 - TSS region transcription start site region 23442
Tssr17197 2 31510030 to 31510036 6 + TSS region transcription start site region 17197
Tssr17198 2 31510932 to 31510937 5 + TSS region transcription start site region 17198
Tssr17199 2 31511051 to 31511068 17 + TSS region transcription start site region 17199
Tssr17200 2 31511078 to 31511089 11 + TSS region transcription start site region 17200
Tssr17201 2 31515729 to 31515764 35 + TSS region transcription start site region 17201
Tssr17202 2 31518706 to 31518741 35 + TSS region transcription start site region 17202
Gm32952 2 31527876 to 31552067 24191 - lncRNA gene predicted gene, 32952
D2Jpk4 2 31547190 to 31547374 184 DNA segment DNA segment, Chr 2, Japan, Kominami 4
Gm13426 2 31551901 to 31552695 794 - pseudogene predicted gene 13426
Cpgi11474 2 31572277 to 31573249 972 CpG island CpG island 11474
Tssr17203 2 31572647 to 31572658 11 + TSS region transcription start site region 17203
Fubp3 2 31572651 to 31617526 44875 + protein coding gene far upstream element (FUSE) binding protein 3
Tssr17204 2 31572667 to 31572678 11 + TSS region transcription start site region 17204
Tssr17205 2 31572701 to 31572724 23 + TSS region transcription start site region 17205
Tssr17206 2 31572775 to 31572841 66 + TSS region transcription start site region 17206
Mir6998 2 31612421 to 31612484 63 + miRNA gene microRNA 6998
Tssr17207 2 31615514 to 31615538 24 + TSS region transcription start site region 17207
Tssr17208 2 31616595 to 31616599 4 + TSS region transcription start site region 17208
Gm13425 2 31633453 to 31640589 7136 - antisense lncRNA gene predicted gene 13425
Cpgi11475 2 31635127 to 31637355 2228 CpG island CpG island 11475
Tssr23443 2 31635906 to 31635907 1 - TSS region transcription start site region 23443
Cpgi11476 2 31637559 to 31638479 920 CpG island CpG island 11476
Cpgi11477 2 31638929 to 31640869 1940 CpG island CpG island 11477
Tssr17209 2 31639717 to 31639723 6 + TSS region transcription start site region 17209
Prdm12 2 31640037 to 31655795 15758 + protein coding gene PR domain containing 12
Cpgi11478 2 31641159 to 31641366 207 CpG island CpG island 11478
D2Mit268 2 31641472 to 31641621 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 268
Cpgi11479 2 31641816 to 31642342 526 CpG island CpG island 11479
Cpgi11480 2 31653663 to 31655031 1368 CpG island CpG island 11480
Cpgi11481 2 31655278 to 31655547 269 CpG island CpG island 11481
Gm13424 2 31660470 to 31661427 957 + pseudogene predicted gene 13424
Cpgi11482 2 31670598 to 31671080 482 CpG island CpG island 11482
Tssr17210 2 31670714 to 31670741 27 + TSS region transcription start site region 17210
Exosc2 2 31670737 to 31681349 10612 + protein coding gene exosome component 2
Tssr17211 2 31680276 to 31680280 4 + TSS region transcription start site region 17211
Gm13427 2 31681451 to 31688433 6982 - antisense lncRNA gene predicted gene 13427
Cpgi11483 2 31688016 to 31689140 1124 CpG island CpG island 11483
Tssr17212 2 31688330 to 31688386 56 + TSS region transcription start site region 17212
Abl1 2 31688376 to 31804227 115851 + protein coding gene c-abl oncogene 1, non-receptor tyrosine kinase
Tssr17213 2 31688401 to 31688415 14 + TSS region transcription start site region 17213
Tssr17214 2 31688525 to 31688560 35 + TSS region transcription start site region 17214
Cpgi11484 2 31759660 to 31760148 488 CpG island CpG island 11484
Tssr17215 2 31759901 to 31759921 20 + TSS region transcription start site region 17215
Tssr17216 2 31759932 to 31759989 57 + TSS region transcription start site region 17216
Tssr17217 2 31759993 to 31760023 30 + TSS region transcription start site region 17217
Qrfp 2 31806168 to 31810580 4412 - protein coding gene pyroglutamylated RFamide peptide
Fibcd1 2 31813290 to 31846005 32715 - protein coding gene fibrinogen C domain containing 1
Cpgi11485 2 31822757 to 31823021 264 CpG island CpG island 11485
Cpgi11486 2 31825587 to 31825800 213 CpG island CpG island 11486
Cpgi11487 2 31845388 to 31847137 1749 CpG island CpG island 11487
Tssr23444 2 31845925 to 31845952 27 - TSS region transcription start site region 23444
Cpgi11488 2 31880744 to 31880971 227 CpG island CpG island 11488
Gm13441 2 31886934 to 31892417 5483 - antisense lncRNA gene predicted gene 13441
Cpgi11489 2 31886981 to 31887883 902 CpG island CpG island 11489
Tssr17218 2 31887262 to 31887310 48 + TSS region transcription start site region 17218
Lamc3 2 31887291 to 31946539 59248 + protein coding gene laminin gamma 3
Cpgi11490 2 31949850 to 31950925 1075 CpG island CpG island 11490
Tssr17219 2 31950257 to 31950281 24 + TSS region transcription start site region 17219
Tssr17220 2 31950290 to 31950301 11 + TSS region transcription start site region 17220
Aif1l 2 31950303 to 31973442 23139 + protein coding gene allograft inflammatory factor 1-like
Tssr17221 2 31950307 to 31950315 8 + TSS region transcription start site region 17221
Tssr17222 2 31950328 to 31950338 10 + TSS region transcription start site region 17222
Gm13442 2 31961690 to 31962547 857 - antisense lncRNA gene predicted gene 13442
Tssr17223 2 31962014 to 31962024 10 + TSS region transcription start site region 17223
Tssr17224 2 31962062 to 31962072 10 + TSS region transcription start site region 17224
Tssr17225 2 31962180 to 31962197 17 + TSS region transcription start site region 17225
Tssr17226 2 31962201 to 31962242 41 + TSS region transcription start site region 17226
Tssr459 2 31965682 to 31965685 3 + TSS region transcription start site region 459
Cpgi11491 2 31974065 to 31975092 1027 CpG island CpG island 11491
Tssr17227 2 31974427 to 31974448 21 + TSS region transcription start site region 17227
Nup214 2 31974436 to 32053975 79539 + protein coding gene nucleoporin 214
Tssr17228 2 31974450 to 31974498 48 + TSS region transcription start site region 17228
Gm13608 2 31985059 to 31986458 1399 + pseudogene predicted gene 13608
Tssr17229 2 31991355 to 31991367 12 + TSS region transcription start site region 17229
Tssr17230 2 32004326 to 32004374 48 + TSS region transcription start site region 17230
Tssr17231 2 32006428 to 32006461 33 + TSS region transcription start site region 17231
Gm13609 2 32016644 to 32017344 700 - antisense lncRNA gene predicted gene 13609
Tssr23445 2 32017333 to 32017362 29 - TSS region transcription start site region 23445
Tssr17232 2 32017487 to 32017503 16 + TSS region transcription start site region 17232
Tssr17233 2 32017511 to 32017530 19 + TSS region transcription start site region 17233
Tssr17234 2 32034409 to 32034419 10 + TSS region transcription start site region 17234
Tssr17235 2 32034432 to 32034454 22 + TSS region transcription start site region 17235
Tssr23446 2 32045586 to 32045616 30 - TSS region transcription start site region 23446
Tssr17236 2 32045724 to 32045749 25 + TSS region transcription start site region 17236
Tssr17237 2 32047374 to 32047401 27 + TSS region transcription start site region 17237
Fam78a 2 32050055 to 32084857 34802 - protein coding gene family with sequence similarity 78, member A
Gm16534 2 32050086 to 32064911 14825 - unclassified non-coding RNA gene predicted gene 16534
Mir7674 2 32050946 to 32051008 62 + miRNA gene microRNA 7674
Tssr17238 2 32052050 to 32052064 14 + TSS region transcription start site region 17238
Tssr17239 2 32057606 to 32057617 11 + TSS region transcription start site region 17239
Tssr23447 2 32058660 to 32058664 4 - TSS region transcription start site region 23447
Tssr23448 2 32063245 to 32063259 14 - TSS region transcription start site region 23448
Tssr17240 2 32063330 to 32063345 15 + TSS region transcription start site region 17240
Tssr23449 2 32065064 to 32065083 19 - TSS region transcription start site region 23449
Tssr23450 2 32065089 to 32065119 30 - TSS region transcription start site region 23450
Tssr23451 2 32065356 to 32065363 7 - TSS region transcription start site region 23451
Tssr23452 2 32065413 to 32065437 24 - TSS region transcription start site region 23452
Tssr23453 2 32065438 to 32065457 19 - TSS region transcription start site region 23453
Tssr23454 2 32079339 to 32079350 11 - TSS region transcription start site region 23454
Tssr17241 2 32081552 to 32081562 10 + TSS region transcription start site region 17241
Tssr17242 2 32081583 to 32081621 38 + TSS region transcription start site region 17242
1700020L05Rik 2 32082361 to 32082637 276 unclassified gene RIKEN cDNA 1700020L05 gene
Cpgi11492 2 32082598 to 32082834 236 CpG island CpG island 11492
Cpgi11493 2 32083133 to 32085008 1875 CpG island CpG island 11493
Tssr23455 2 32083220 to 32083271 51 - TSS region transcription start site region 23455
Tssr17243 2 32083279 to 32083290 11 + TSS region transcription start site region 17243
Tssr23456 2 32083304 to 32083330 26 - TSS region transcription start site region 23456
Hbnr5 2 105313225 to 31324555 -73988670 QTL Heligmosomoides bakeri nematode resistance 5