Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:31244993-32275023

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11468 2 31245177 to 31247001 1824 CpG island CpG island 11468
Tssr17173 2 31245801 to 31245900 99 + TSS region transcription start site region 17173
Ncs1 2 31245823 to 31295989 50166 + protein coding gene neuronal calcium sensor 1
Tssr17174 2 31245905 to 31245916 11 + TSS region transcription start site region 17174
Tssr17175 2 31246042 to 31246055 13 + TSS region transcription start site region 17175
Tssr17176 2 31246069 to 31246120 51 + TSS region transcription start site region 17176
Tssr17177 2 31278033 to 31278044 11 + TSS region transcription start site region 17177
Tssr17178 2 31284144 to 31284157 13 + TSS region transcription start site region 17178
Tssr17179 2 31293185 to 31293194 9 + TSS region transcription start site region 17179
Gm32866 2 31307613 to 31314488 6875 - lncRNA gene predicted gene, 32866
Cfq6 2 31313023 to 44618192 13305169 QTL conditioned fear QTL 6
Cpgi11469 2 31313962 to 31315034 1072 CpG island CpG island 11469
Tssr17180 2 31314278 to 31314287 9 + TSS region transcription start site region 17180
Tssr17181 2 31314303 to 31314376 73 + TSS region transcription start site region 17181
Hmcn2 2 31314415 to 31460738 146323 + protein coding gene hemicentin 2
Sbmd2 2 31324555 to 31324701 146 QTL spinal bone mineral density 2
D2Mit296 2 31324555 to 31324701 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 296
D2Mit64 2 31344757 to 31344930 173 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 64
D2Mit152 2 31401981 to 31402089 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 152
Cpgi11470 2 31425245 to 31425397 152 CpG island CpG island 11470
Tssr17182 2 31446326 to 31446365 39 + TSS region transcription start site region 17182
Tssr17183 2 31446760 to 31446775 15 + TSS region transcription start site region 17183
Tssr17184 2 31449891 to 31449899 8 + TSS region transcription start site region 17184
Tssr17185 2 31453787 to 31453800 13 + TSS region transcription start site region 17185
Tssr17186 2 31454451 to 31454468 17 + TSS region transcription start site region 17186
Tssr17187 2 31454478 to 31454556 78 + TSS region transcription start site region 17187
Tssr17188 2 31454769 to 31454788 19 + TSS region transcription start site region 17188
Cpgi11471 2 31459719 to 31460820 1101 CpG island CpG island 11471
Tssr23438 2 31460387 to 31460397 10 - TSS region transcription start site region 23438
Tssr23439 2 31460430 to 31460446 16 - TSS region transcription start site region 23439
Tssr17189 2 31462157 to 31462181 24 + TSS region transcription start site region 17189
Cpgi11472 2 31469779 to 31470831 1052 CpG island CpG island 11472
Tssr17190 2 31470240 to 31470247 7 + TSS region transcription start site region 17190
Tssr17191 2 31470254 to 31470282 28 + TSS region transcription start site region 17191
Ass1 2 31470270 to 31520670 50400 + protein coding gene argininosuccinate synthetase 1
Tssr17192 2 31470288 to 31470310 22 + TSS region transcription start site region 17192
Tssr23440 2 31470847 to 31470853 6 - TSS region transcription start site region 23440
Tssr17193 2 31476860 to 31476868 8 + TSS region transcription start site region 17193
Tssr23441 2 31481199 to 31481202 3 - TSS region transcription start site region 23441
Tssr17194 2 31486503 to 31486515 12 + TSS region transcription start site region 17194
Tssr17195 2 31489074 to 31489078 4 + TSS region transcription start site region 17195
Cpgi11473 2 31489197 to 31489398 201 CpG island CpG island 11473
Tssr17196 2 31492315 to 31492338 23 + TSS region transcription start site region 17196
Tssr23442 2 31492342 to 31492365 23 - TSS region transcription start site region 23442
Tssr17197 2 31510030 to 31510036 6 + TSS region transcription start site region 17197
Tssr17198 2 31510932 to 31510937 5 + TSS region transcription start site region 17198
Tssr17199 2 31511051 to 31511068 17 + TSS region transcription start site region 17199
Tssr17200 2 31511078 to 31511089 11 + TSS region transcription start site region 17200
Tssr17201 2 31515729 to 31515764 35 + TSS region transcription start site region 17201
Tssr17202 2 31518706 to 31518741 35 + TSS region transcription start site region 17202
Gm32952 2 31527876 to 31552067 24191 - lncRNA gene predicted gene, 32952
D2Jpk4 2 31547190 to 31547374 184 DNA segment DNA segment, Chr 2, Japan, Kominami 4
Gm13426 2 31551901 to 31552695 794 - pseudogene predicted gene 13426
Cpgi11474 2 31572277 to 31573249 972 CpG island CpG island 11474
Tssr17203 2 31572647 to 31572658 11 + TSS region transcription start site region 17203
Fubp3 2 31572651 to 31617526 44875 + protein coding gene far upstream element (FUSE) binding protein 3
Tssr17204 2 31572667 to 31572678 11 + TSS region transcription start site region 17204
Tssr17205 2 31572701 to 31572724 23 + TSS region transcription start site region 17205
Tssr17206 2 31572775 to 31572841 66 + TSS region transcription start site region 17206
Mir6998 2 31612421 to 31612484 63 + miRNA gene microRNA 6998
Tssr17207 2 31615514 to 31615538 24 + TSS region transcription start site region 17207
Tssr17208 2 31616595 to 31616599 4 + TSS region transcription start site region 17208
Gm13425 2 31633453 to 31640589 7136 - antisense lncRNA gene predicted gene 13425
Cpgi11475 2 31635127 to 31637355 2228 CpG island CpG island 11475
Tssr23443 2 31635906 to 31635907 1 - TSS region transcription start site region 23443
Cpgi11476 2 31637559 to 31638479 920 CpG island CpG island 11476
Cpgi11477 2 31638929 to 31640869 1940 CpG island CpG island 11477
Tssr17209 2 31639717 to 31639723 6 + TSS region transcription start site region 17209
Prdm12 2 31640037 to 31655795 15758 + protein coding gene PR domain containing 12
Cpgi11478 2 31641159 to 31641366 207 CpG island CpG island 11478
D2Mit268 2 31641472 to 31641621 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 268
Cpgi11479 2 31641816 to 31642342 526 CpG island CpG island 11479
Cpgi11480 2 31653663 to 31655031 1368 CpG island CpG island 11480
Cpgi11481 2 31655278 to 31655547 269 CpG island CpG island 11481
Gm13424 2 31660470 to 31661427 957 + pseudogene predicted gene 13424
Cpgi11482 2 31670598 to 31671080 482 CpG island CpG island 11482
Tssr17210 2 31670714 to 31670741 27 + TSS region transcription start site region 17210
Exosc2 2 31670737 to 31681349 10612 + protein coding gene exosome component 2
Tssr17211 2 31680276 to 31680280 4 + TSS region transcription start site region 17211
Gm13427 2 31681451 to 31688433 6982 - antisense lncRNA gene predicted gene 13427
Cpgi11483 2 31688016 to 31689140 1124 CpG island CpG island 11483
Tssr17212 2 31688330 to 31688386 56 + TSS region transcription start site region 17212
Abl1 2 31688376 to 31804227 115851 + protein coding gene c-abl oncogene 1, non-receptor tyrosine kinase
Tssr17213 2 31688401 to 31688415 14 + TSS region transcription start site region 17213
Tssr17214 2 31688525 to 31688560 35 + TSS region transcription start site region 17214
Cpgi11484 2 31759660 to 31760148 488 CpG island CpG island 11484
Tssr17215 2 31759901 to 31759921 20 + TSS region transcription start site region 17215
Tssr17216 2 31759932 to 31759989 57 + TSS region transcription start site region 17216
Tssr17217 2 31759993 to 31760023 30 + TSS region transcription start site region 17217
Qrfp 2 31806168 to 31810580 4412 - protein coding gene pyroglutamylated RFamide peptide
Fibcd1 2 31813290 to 31846005 32715 - protein coding gene fibrinogen C domain containing 1
Cpgi11485 2 31822757 to 31823021 264 CpG island CpG island 11485
Cpgi11486 2 31825587 to 31825800 213 CpG island CpG island 11486
Cpgi11487 2 31845388 to 31847137 1749 CpG island CpG island 11487
Tssr23444 2 31845925 to 31845952 27 - TSS region transcription start site region 23444
Cpgi11488 2 31880744 to 31880971 227 CpG island CpG island 11488
Gm13441 2 31886934 to 31892417 5483 - antisense lncRNA gene predicted gene 13441
Cpgi11489 2 31886981 to 31887883 902 CpG island CpG island 11489
Tssr17218 2 31887262 to 31887310 48 + TSS region transcription start site region 17218
Lamc3 2 31887291 to 31946539 59248 + protein coding gene laminin gamma 3
Cpgi11490 2 31949850 to 31950925 1075 CpG island CpG island 11490
Tssr17219 2 31950257 to 31950281 24 + TSS region transcription start site region 17219
Tssr17220 2 31950290 to 31950301 11 + TSS region transcription start site region 17220
Aif1l 2 31950303 to 31973442 23139 + protein coding gene allograft inflammatory factor 1-like
Tssr17221 2 31950307 to 31950315 8 + TSS region transcription start site region 17221
Tssr17222 2 31950328 to 31950338 10 + TSS region transcription start site region 17222
Gm13442 2 31961690 to 31962547 857 - antisense lncRNA gene predicted gene 13442
Tssr17223 2 31962014 to 31962024 10 + TSS region transcription start site region 17223
Tssr17224 2 31962062 to 31962072 10 + TSS region transcription start site region 17224
Tssr17225 2 31962180 to 31962197 17 + TSS region transcription start site region 17225
Tssr17226 2 31962201 to 31962242 41 + TSS region transcription start site region 17226
Tssr459 2 31965682 to 31965685 3 + TSS region transcription start site region 459
Cpgi11491 2 31974065 to 31975092 1027 CpG island CpG island 11491
Tssr17227 2 31974427 to 31974448 21 + TSS region transcription start site region 17227
Nup214 2 31974436 to 32053975 79539 + protein coding gene nucleoporin 214
Tssr17228 2 31974450 to 31974498 48 + TSS region transcription start site region 17228
Gm13608 2 31985059 to 31986458 1399 + pseudogene predicted gene 13608
Tssr17229 2 31991355 to 31991367 12 + TSS region transcription start site region 17229
Tssr17230 2 32004326 to 32004374 48 + TSS region transcription start site region 17230
Tssr17231 2 32006428 to 32006461 33 + TSS region transcription start site region 17231
Gm13609 2 32016644 to 32017344 700 - antisense lncRNA gene predicted gene 13609
Tssr23445 2 32017333 to 32017362 29 - TSS region transcription start site region 23445
Tssr17232 2 32017487 to 32017503 16 + TSS region transcription start site region 17232
Tssr17233 2 32017511 to 32017530 19 + TSS region transcription start site region 17233
Tssr17234 2 32034409 to 32034419 10 + TSS region transcription start site region 17234
Tssr17235 2 32034432 to 32034454 22 + TSS region transcription start site region 17235
Tssr23446 2 32045586 to 32045616 30 - TSS region transcription start site region 23446
Tssr17236 2 32045724 to 32045749 25 + TSS region transcription start site region 17236
Tssr17237 2 32047374 to 32047401 27 + TSS region transcription start site region 17237
Fam78a 2 32050055 to 32084857 34802 - protein coding gene family with sequence similarity 78, member A
Gm16534 2 32050086 to 32064911 14825 - unclassified non-coding RNA gene predicted gene 16534
Mir7674 2 32050946 to 32051008 62 + miRNA gene microRNA 7674
Tssr17238 2 32052050 to 32052064 14 + TSS region transcription start site region 17238
Tssr17239 2 32057606 to 32057617 11 + TSS region transcription start site region 17239
Tssr23447 2 32058660 to 32058664 4 - TSS region transcription start site region 23447
Tssr23448 2 32063245 to 32063259 14 - TSS region transcription start site region 23448
Tssr17240 2 32063330 to 32063345 15 + TSS region transcription start site region 17240
Tssr23449 2 32065064 to 32065083 19 - TSS region transcription start site region 23449
Tssr23450 2 32065089 to 32065119 30 - TSS region transcription start site region 23450
Tssr23451 2 32065356 to 32065363 7 - TSS region transcription start site region 23451
Tssr23452 2 32065413 to 32065437 24 - TSS region transcription start site region 23452
Tssr23453 2 32065438 to 32065457 19 - TSS region transcription start site region 23453
Tssr23454 2 32079339 to 32079350 11 - TSS region transcription start site region 23454
Tssr17241 2 32081552 to 32081562 10 + TSS region transcription start site region 17241
Tssr17242 2 32081583 to 32081621 38 + TSS region transcription start site region 17242
1700020L05Rik 2 32082361 to 32082637 276 unclassified gene RIKEN cDNA 1700020L05 gene
Cpgi11492 2 32082598 to 32082834 236 CpG island CpG island 11492
Cpgi11493 2 32083133 to 32085008 1875 CpG island CpG island 11493
Tssr23455 2 32083220 to 32083271 51 - TSS region transcription start site region 23455
Tssr17243 2 32083279 to 32083290 11 + TSS region transcription start site region 17243
Tssr23456 2 32083304 to 32083330 26 - TSS region transcription start site region 23456
Tssr23457 2 32083621 to 32083634 13 - TSS region transcription start site region 23457
Tssr23458 2 32083650 to 32083751 101 - TSS region transcription start site region 23458
Tssr23459 2 32083783 to 32083796 13 - TSS region transcription start site region 23459
Tssr17244 2 32083867 to 32083897 30 + TSS region transcription start site region 17244
Tssr23460 2 32084650 to 32084731 81 - TSS region transcription start site region 23460
Gm33126 2 32085296 to 32087409 2113 + lncRNA gene predicted gene, 33126
Tssr23461 2 32085320 to 32085329 9 - TSS region transcription start site region 23461
Tssr17245 2 32085492 to 32085502 10 + TSS region transcription start site region 17245
Tssr23462 2 32087420 to 32087423 3 - TSS region transcription start site region 23462
Tssr23463 2 32087449 to 32087470 21 - TSS region transcription start site region 23463
Cpgi11494 2 32088347 to 32088957 610 CpG island CpG island 11494
Tssr17246 2 32095518 to 32095595 77 + TSS region transcription start site region 17246
Plpp7 2 32095528 to 32110820 15292 + protein coding gene phospholipid phosphatase 7 (inactive)
Tssr17247 2 32095702 to 32095717 15 + TSS region transcription start site region 17247
Cpgi11495 2 32095908 to 32096258 350 CpG island CpG island 11495
Cpgi11496 2 32109724 to 32109877 153 CpG island CpG island 11496
Cpgi11497 2 32137616 to 32138271 655 CpG island CpG island 11497
Tssr23464 2 32137905 to 32137982 77 - TSS region transcription start site region 23464
Cpgi11498 2 32150389 to 32152162 1773 CpG island CpG island 11498
Tssr17248 2 32151074 to 32151262 188 + TSS region transcription start site region 17248
Prrc2b 2 32151148 to 32234537 83389 + protein coding gene proline-rich coiled-coil 2B
Tssr17249 2 32162378 to 32162410 32 + TSS region transcription start site region 17249
Tssr17250 2 32163037 to 32163045 8 + TSS region transcription start site region 17250
Tssr23465 2 32167930 to 32167978 48 - TSS region transcription start site region 23465
Gm27805 2 32173171 to 32173249 78 + miRNA gene predicted gene, 27805
D2Bwg0886e 2 32178006 to 32178179 173 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0886 expressed
Tssr17251 2 32183023 to 32183049 26 + TSS region transcription start site region 17251
Tssr17252 2 32193941 to 32193964 23 + TSS region transcription start site region 17252
Gm22192 2 32221970 to 32222054 84 + snoRNA gene predicted gene, 22192
Tssr17253 2 32225036 to 32225046 10 + TSS region transcription start site region 17253
Gm25632 2 32225653 to 32225737 84 + snoRNA gene predicted gene, 25632
E030004H24Rik 2 32227327 to 32228523 1196 unclassified gene RIKEN cDNA E030004H24 gene
Gm13610 2 32232782 to 32236382 3600 - antisense lncRNA gene predicted gene 13610
Cpgi11499 2 32236183 to 32237036 853 CpG island CpG island 11499
Tssr23466 2 32236351 to 32236363 12 - TSS region transcription start site region 23466
Tssr23467 2 32236365 to 32236373 8 - TSS region transcription start site region 23467
Tssr23468 2 32236377 to 32236393 16 - TSS region transcription start site region 23468
Tssr17254 2 32236579 to 32236595 16 + TSS region transcription start site region 17254
Pomt1 2 32236595 to 32255005 18410 + protein coding gene protein-O-mannosyltransferase 1
Tssr17255 2 32236601 to 32236622 21 + TSS region transcription start site region 17255
Tssr17256 2 32236631 to 32236701 70 + TSS region transcription start site region 17256
Tssr17257 2 32237297 to 32237340 43 + TSS region transcription start site region 17257
Uck1 2 32255002 to 32260159 5157 - protein coding gene uridine-cytidine kinase 1
Cpgi11500 2 32259715 to 32260536 821 CpG island CpG island 11500
Tssr23469 2 32260044 to 32260053 9 - TSS region transcription start site region 23469
Tssr23470 2 32260057 to 32260114 57 - TSS region transcription start site region 23470
Tssr23471 2 32260138 to 32260152 14 - TSS region transcription start site region 23471
Gm13611 2 32271845 to 32272162 317 + pseudogene predicted gene 13611
Hbnr5 2 105313225 to 31324555 -73988670 QTL Heligmosomoides bakeri nematode resistance 5