Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:31005905-31485916

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp20 2 30982279 to 31022655 40376 + protein coding gene ubiquitin specific peptidase 20
Fnbp1 2 31026206 to 31142008 115802 - protein coding gene formin binding protein 1
Tssr23417 2 31030788 to 31030803 15 - TSS region transcription start site region 23417
Tssr23418 2 31031656 to 31031660 4 - TSS region transcription start site region 23418
Tssr23419 2 31031767 to 31031779 12 - TSS region transcription start site region 23419
Tssr23420 2 31031858 to 31031862 4 - TSS region transcription start site region 23420
Tssr23421 2 31035516 to 31035551 35 - TSS region transcription start site region 23421
Tssr23422 2 31035724 to 31035772 48 - TSS region transcription start site region 23422
Tssr23423 2 31036750 to 31036765 15 - TSS region transcription start site region 23423
Tssr23424 2 31036783 to 31036794 11 - TSS region transcription start site region 23424
Tssr23425 2 31051181 to 31051198 17 - TSS region transcription start site region 23425
Tssr23426 2 31053596 to 31053608 12 - TSS region transcription start site region 23426
Tssr23427 2 31054197 to 31054209 12 - TSS region transcription start site region 23427
Tssr17166 2 31060458 to 31060473 15 + TSS region transcription start site region 17166
Cpgi11463 2 31061288 to 31061683 395 CpG island CpG island 11463
Tssr17167 2 31081710 to 31081736 26 + TSS region transcription start site region 17167
Cpgi11464 2 31082713 to 31083110 397 CpG island CpG island 11464
Tssr17168 2 31082873 to 31082876 3 + TSS region transcription start site region 17168
Tssr23428 2 31100985 to 31100995 10 - TSS region transcription start site region 23428
Tssr23429 2 31116289 to 31116320 31 - TSS region transcription start site region 23429
Tssr17169 2 31140280 to 31140286 6 + TSS region transcription start site region 17169
Cpgi11465 2 31140924 to 31142523 1599 CpG island CpG island 11465
Tssr23430 2 31141943 to 31142001 58 - TSS region transcription start site region 23430
Tssr23431 2 31142002 to 31142017 15 - TSS region transcription start site region 23431
Tssr23432 2 31142019 to 31142028 9 - TSS region transcription start site region 23432
Tssr17170 2 31143412 to 31143443 31 + TSS region transcription start site region 17170
D330023K18Rik 2 31151049 to 31152291 1242 - lncRNA gene RIKEN cDNA D330023K18 gene
Cpgi11466 2 31152000 to 31152789 789 CpG island CpG island 11466
Tssr23433 2 31152234 to 31152284 50 - TSS region transcription start site region 23433
Gpr107 2 31152316 to 31216567 64251 + protein coding gene G protein-coupled receptor 107
Tssr17171 2 31152318 to 31152360 42 + TSS region transcription start site region 17171
Tssr23434 2 31153166 to 31153172 6 - TSS region transcription start site region 23434
Tssr23435 2 31163526 to 31163542 16 - TSS region transcription start site region 23435
Tssr23436 2 31163563 to 31163571 8 - TSS region transcription start site region 23436
Tssr17172 2 31171949 to 31171963 14 + TSS region transcription start site region 17172
Gm22516 2 31189691 to 31189814 123 + snoRNA gene predicted gene, 22516
Gm13405 2 31209470 to 31211347 1877 - antisense lncRNA gene predicted gene 13405
Cpgi11467 2 31239201 to 31239663 462 CpG island CpG island 11467
Tssr23437 2 31239481 to 31239486 5 - TSS region transcription start site region 23437
Cpgi11468 2 31245177 to 31247001 1824 CpG island CpG island 11468
Tssr17173 2 31245801 to 31245900 99 + TSS region transcription start site region 17173
Ncs1 2 31245823 to 31295989 50166 + protein coding gene neuronal calcium sensor 1
Tssr17174 2 31245905 to 31245916 11 + TSS region transcription start site region 17174
Tssr17175 2 31246042 to 31246055 13 + TSS region transcription start site region 17175
Tssr17176 2 31246069 to 31246120 51 + TSS region transcription start site region 17176
Tssr17177 2 31278033 to 31278044 11 + TSS region transcription start site region 17177
Tssr17178 2 31284144 to 31284157 13 + TSS region transcription start site region 17178
Tssr17179 2 31293185 to 31293194 9 + TSS region transcription start site region 17179
Gm32866 2 31307613 to 31314488 6875 - lncRNA gene predicted gene, 32866
Cfq6 2 31313023 to 44618192 13305169 QTL conditioned fear QTL 6
Cpgi11469 2 31313962 to 31315034 1072 CpG island CpG island 11469
Tssr17180 2 31314278 to 31314287 9 + TSS region transcription start site region 17180
Tssr17181 2 31314303 to 31314376 73 + TSS region transcription start site region 17181
Hmcn2 2 31314415 to 31460738 146323 + protein coding gene hemicentin 2
Sbmd2 2 31324555 to 31324701 146 QTL spinal bone mineral density 2
D2Mit296 2 31324555 to 31324701 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 296
D2Mit64 2 31344757 to 31344930 173 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 64
D2Mit152 2 31401981 to 31402089 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 152
Cpgi11470 2 31425245 to 31425397 152 CpG island CpG island 11470
Tssr17182 2 31446326 to 31446365 39 + TSS region transcription start site region 17182
Tssr17183 2 31446760 to 31446775 15 + TSS region transcription start site region 17183
Tssr17184 2 31449891 to 31449899 8 + TSS region transcription start site region 17184
Tssr17185 2 31453787 to 31453800 13 + TSS region transcription start site region 17185
Tssr17186 2 31454451 to 31454468 17 + TSS region transcription start site region 17186
Tssr17187 2 31454478 to 31454556 78 + TSS region transcription start site region 17187
Tssr17188 2 31454769 to 31454788 19 + TSS region transcription start site region 17188
Cpgi11471 2 31459719 to 31460820 1101 CpG island CpG island 11471
Tssr23438 2 31460387 to 31460397 10 - TSS region transcription start site region 23438
Tssr23439 2 31460430 to 31460446 16 - TSS region transcription start site region 23439
Tssr17189 2 31462157 to 31462181 24 + TSS region transcription start site region 17189
Cpgi11472 2 31469779 to 31470831 1052 CpG island CpG island 11472
Tssr17190 2 31470240 to 31470247 7 + TSS region transcription start site region 17190
Tssr17191 2 31470254 to 31470282 28 + TSS region transcription start site region 17191
Ass1 2 31470270 to 31520670 50400 + protein coding gene argininosuccinate synthetase 1
Tssr17192 2 31470288 to 31470310 22 + TSS region transcription start site region 17192
Tssr23440 2 31470847 to 31470853 6 - TSS region transcription start site region 23440
Tssr17193 2 31476860 to 31476868 8 + TSS region transcription start site region 17193
Tssr23441 2 31481199 to 31481202 3 - TSS region transcription start site region 23441
Hbnr5 2 105313225 to 31324555 -73988670 QTL Heligmosomoides bakeri nematode resistance 5