Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:30432196-30942595

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpa 2 30416050 to 30447807 31757 + protein coding gene protein phosphatase 2 protein activator
Tssr17121 2 30439507 to 30439534 27 + TSS region transcription start site region 17121
Tssr17122 2 30441831 to 30441836 5 + TSS region transcription start site region 17122
Tssr17123 2 30441919 to 30441949 30 + TSS region transcription start site region 17123
Tssr17124 2 30441978 to 30442004 26 + TSS region transcription start site region 17124
Tssr17125 2 30442063 to 30442078 15 + TSS region transcription start site region 17125
Tssr17126 2 30445634 to 30445647 13 + TSS region transcription start site region 17126
Tssr17127 2 30466379 to 30466384 5 + TSS region transcription start site region 17127
Tssr458 2 30469220 to 30469222 2 - TSS region transcription start site region 458
Cpgi11437 2 30469670 to 30470901 1231 CpG island CpG island 11437
Cpgi11438 2 30472332 to 30474845 2513 CpG island CpG island 11438
Ier5l 2 30472631 to 30474199 1568 - protein coding gene immediate early response 5-like
Tssr23382 2 30473474 to 30473521 47 - TSS region transcription start site region 23382
Tssr23383 2 30474212 to 30474222 10 - TSS region transcription start site region 23383
Gm31291 2 30475447 to 30489052 13605 + lncRNA gene predicted gene, 31291
Gm39781 2 30497826 to 30502128 4302 + lncRNA gene predicted gene, 39781
Gm14487 2 30534729 to 30539022 4293 + lincRNA gene predicted gene 14487
Gm31585 2 30544429 to 30547844 3415 + lncRNA gene predicted gene, 31585
Cpgi11439 2 30545038 to 30545552 514 CpG island CpG island 11439
Tssr23384 2 30556582 to 30556617 35 - TSS region transcription start site region 23384
Cpgi11440 2 30594595 to 30594836 241 CpG island CpG island 11440
Tssr23385 2 30594901 to 30594917 16 - TSS region transcription start site region 23385
Tssr17128 2 30595037 to 30595048 11 + TSS region transcription start site region 17128
Cstad 2 30595044 to 30608945 13901 + protein coding gene CSA-conditional, T cell activation-dependent protein
Cpgi11441 2 30595189 to 30595342 153 CpG island CpG island 11441
D2Mit33 2 30602309 to 30602488 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 33
D2Dcr46 2 30602347 to 30602475 128 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 46
Cpgi11442 2 30604978 to 30605135 157 CpG island CpG island 11442
9330198N18Rik 2 30629210 to 30643463 14253 + lincRNA gene RIKEN cDNA 9330198N18 gene
Tssr23386 2 30629891 to 30629895 4 - TSS region transcription start site region 23386
Tssr17129 2 30636549 to 30636562 13 + TSS region transcription start site region 17129
Gm32316 2 30647544 to 30655643 8099 - lncRNA gene predicted gene, 32316
Tssr17130 2 30654871 to 30654880 9 + TSS region transcription start site region 17130
Cpgi11443 2 30657899 to 30659007 1108 CpG island CpG island 11443
Tssr23387 2 30658420 to 30658434 14 - TSS region transcription start site region 23387
Gm14486 2 30658468 to 30678011 19543 - lincRNA gene predicted gene 14486
Tssr17131 2 30658689 to 30658732 43 + TSS region transcription start site region 17131
Cpgi11444 2 30676537 to 30677446 909 CpG island CpG island 11444
Cpgi11445 2 30687196 to 30687595 399 CpG island CpG island 11445
Cpgi11446 2 30692709 to 30693835 1126 CpG island CpG island 11446
Cpgi11447 2 30707379 to 30708731 1352 CpG island CpG island 11447
Cpgi11448 2 30711340 to 30712492 1152 CpG island CpG island 11448
Tssr17132 2 30712345 to 30712349 4 + TSS region transcription start site region 17132
Gm14488 2 30713147 to 30720057 6910 - unclassified non-coding RNA gene predicted gene 14488
Tssr17133 2 30717480 to 30717509 29 + TSS region transcription start site region 17133
Cpgi11449 2 30718104 to 30718475 371 CpG island CpG island 11449
Tssr17134 2 30718551 to 30718590 39 + TSS region transcription start site region 17134
Cpgi11450 2 30718852 to 30719238 386 CpG island CpG island 11450
Tssr17135 2 30719258 to 30719294 36 + TSS region transcription start site region 17135
Tssr23388 2 30720022 to 30720033 11 - TSS region transcription start site region 23388
Mir3089 2 30721210 to 30721293 83 + miRNA gene microRNA 3089
Gm39782 2 30721563 to 30723783 2220 - lncRNA gene predicted gene, 39782
Cpgi11451 2 30725707 to 30726142 435 CpG island CpG island 11451
Cpgi11452 2 30771145 to 30772233 1088 CpG island CpG island 11452
Gm39783 2 30771515 to 30783618 12103 + lncRNA gene predicted gene, 39783
Gm39784 2 30783661 to 30787232 3571 - lncRNA gene predicted gene, 39784
Cpgi11453 2 30794360 to 30795033 673 CpG island CpG island 11453
1700001O22Rik 2 30795563 to 30803723 8160 - protein coding gene RIKEN cDNA 1700001O22 gene
Tssr23389 2 30796631 to 30796639 8 - TSS region transcription start site region 23389
Tssr23390 2 30796673 to 30796700 27 - TSS region transcription start site region 23390
Cpgi11454 2 30800844 to 30801944 1100 CpG island CpG island 11454
Tssr23391 2 30801698 to 30801742 44 - TSS region transcription start site region 23391
Tssr23392 2 30803625 to 30803673 48 - TSS region transcription start site region 23392
Tssr17136 2 30803775 to 30803783 8 + TSS region transcription start site region 17136
Tssr17137 2 30803785 to 30803796 11 + TSS region transcription start site region 17137
4930527E20Rik 2 30803793 to 30807429 3636 + antisense lncRNA gene RIKEN cDNA 4930527E20 gene
Cpgi11455 2 30807306 to 30808449 1143 CpG island CpG island 11455
Tssr17138 2 30807370 to 30807391 21 + TSS region transcription start site region 17138
Tssr23393 2 30807535 to 30807574 39 - TSS region transcription start site region 23393
Ntmt1 2 30807826 to 30823033 15207 + protein coding gene N-terminal Xaa-Pro-Lys N-methyltransferase 1
Tssr17139 2 30807928 to 30807999 71 + TSS region transcription start site region 17139
Asb6 2 30823097 to 30828300 5203 - protein coding gene ankyrin repeat and SOCS box-containing 6
Cpgi11456 2 30827506 to 30828650 1144 CpG island CpG island 11456
Tssr23394 2 30828182 to 30828194 12 - TSS region transcription start site region 23394
Tssr23395 2 30828201 to 30828219 18 - TSS region transcription start site region 23395
Tssr23396 2 30828228 to 30828311 83 - TSS region transcription start site region 23396
Cpgi11457 2 30844688 to 30846296 1608 CpG island CpG island 11457
Prrx2 2 30845064 to 30881251 36187 + protein coding gene paired related homeobox 2
Tssr17140 2 30845268 to 30845304 36 + TSS region transcription start site region 17140
Tssr17141 2 30845310 to 30845323 13 + TSS region transcription start site region 17141
Tssr17142 2 30845337 to 30845353 16 + TSS region transcription start site region 17142
Tssr17143 2 30845361 to 30845396 35 + TSS region transcription start site region 17143
Tssr17144 2 30845463 to 30845464 1 + TSS region transcription start site region 17144
Tssr17145 2 30845483 to 30845508 25 + TSS region transcription start site region 17145
Tssr17146 2 30845536 to 30845541 5 + TSS region transcription start site region 17146
Cpgi11458 2 30864608 to 30865283 675 CpG island CpG island 11458
Ptges 2 30889471 to 30903297 13826 - protein coding gene prostaglandin E synthase
Tssr23397 2 30890075 to 30890106 31 - TSS region transcription start site region 23397
Tssr23398 2 30897502 to 30897514 12 - TSS region transcription start site region 23398
Tssr23399 2 30897518 to 30897543 25 - TSS region transcription start site region 23399
Tssr17147 2 30901627 to 30901634 7 + TSS region transcription start site region 17147
Tssr23400 2 30903255 to 30903269 14 - TSS region transcription start site region 23400
Gm39785 2 30912085 to 30930314 18229 - lncRNA gene predicted gene, 39785
Tssr17148 2 30913365 to 30913374 9 + TSS region transcription start site region 17148
Tssr17149 2 30913416 to 30913432 16 + TSS region transcription start site region 17149
Tssr17150 2 30913460 to 30913493 33 + TSS region transcription start site region 17150
Tssr17151 2 30919514 to 30919525 11 + TSS region transcription start site region 17151
Tssr23401 2 30919655 to 30919676 21 - TSS region transcription start site region 23401
Tssr23402 2 30920280 to 30920305 25 - TSS region transcription start site region 23402
Tssr23403 2 30920376 to 30920379 3 - TSS region transcription start site region 23403
Tssr23404 2 30921906 to 30921920 14 - TSS region transcription start site region 23404
Gm13400 2 30923978 to 30924357 379 - pseudogene predicted gene 13400
Tssr23405 2 30924913 to 30924954 41 - TSS region transcription start site region 23405
Tssr17152 2 30925463 to 30925474 11 + TSS region transcription start site region 17152
Tssr17153 2 30927647 to 30927671 24 + TSS region transcription start site region 17153
Tssr23406 2 30928048 to 30928061 13 - TSS region transcription start site region 23406
Tssr23407 2 30928952 to 30928998 46 - TSS region transcription start site region 23407
Tssr17154 2 30929129 to 30929168 39 + TSS region transcription start site region 17154
Cpgi11459 2 30929647 to 30929982 335 CpG island CpG island 11459
Tssr23408 2 30929830 to 30929893 63 - TSS region transcription start site region 23408
Tssr23409 2 30929894 to 30929908 14 - TSS region transcription start site region 23409
Tssr17155 2 30930019 to 30930037 18 + TSS region transcription start site region 17155
Tssr23410 2 30930090 to 30930105 15 - TSS region transcription start site region 23410
Tssr23411 2 30932022 to 30932071 49 - TSS region transcription start site region 23411