Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:30402309-30802488

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crat 2 30400476 to 30415748 15272 - protein coding gene carnitine acetyltransferase
Tssr23367 2 30406402 to 30406415 13 - TSS region transcription start site region 23367
Tssr23368 2 30413270 to 30413299 29 - TSS region transcription start site region 23368
Gm16323 2 30413716 to 30415338 1622 + antisense lncRNA gene predicted gene 16323
Tssr23369 2 30414104 to 30414118 14 - TSS region transcription start site region 23369
Tssr23370 2 30414169 to 30414180 11 - TSS region transcription start site region 23370
Cpgi11436 2 30415091 to 30416679 1588 CpG island CpG island 11436
Tssr23371 2 30415302 to 30415368 66 - TSS region transcription start site region 23371
Tssr23372 2 30415389 to 30415410 21 - TSS region transcription start site region 23372
Tssr23373 2 30415418 to 30415429 11 - TSS region transcription start site region 23373
Tssr23374 2 30415438 to 30415449 11 - TSS region transcription start site region 23374
Tssr23375 2 30415460 to 30415505 45 - TSS region transcription start site region 23375
Tssr23376 2 30415509 to 30415560 51 - TSS region transcription start site region 23376
Tssr23377 2 30415572 to 30415612 40 - TSS region transcription start site region 23377
Tssr23378 2 30415614 to 30415624 10 - TSS region transcription start site region 23378
Tssr17115 2 30415618 to 30415683 65 + TSS region transcription start site region 17115
Tssr23379 2 30415634 to 30415708 74 - TSS region transcription start site region 23379
Tssr23380 2 30415767 to 30415774 7 - TSS region transcription start site region 23380
Tssr23381 2 30416003 to 30416045 42 - TSS region transcription start site region 23381
Tssr17116 2 30416031 to 30416077 46 + TSS region transcription start site region 17116
Ptpa 2 30416050 to 30447807 31757 + protein coding gene protein phosphatase 2 protein activator
Tssr17117 2 30416080 to 30416090 10 + TSS region transcription start site region 17117
Tssr17118 2 30416096 to 30416147 51 + TSS region transcription start site region 17118
Tssr17119 2 30416187 to 30416221 34 + TSS region transcription start site region 17119
Tssr17120 2 30430042 to 30430047 5 + TSS region transcription start site region 17120
Tssr17121 2 30439507 to 30439534 27 + TSS region transcription start site region 17121
Tssr17122 2 30441831 to 30441836 5 + TSS region transcription start site region 17122
Tssr17123 2 30441919 to 30441949 30 + TSS region transcription start site region 17123
Tssr17124 2 30441978 to 30442004 26 + TSS region transcription start site region 17124
Tssr17125 2 30442063 to 30442078 15 + TSS region transcription start site region 17125
Tssr17126 2 30445634 to 30445647 13 + TSS region transcription start site region 17126
Tssr17127 2 30466379 to 30466384 5 + TSS region transcription start site region 17127
Tssr458 2 30469220 to 30469222 2 - TSS region transcription start site region 458
Cpgi11437 2 30469670 to 30470901 1231 CpG island CpG island 11437
Cpgi11438 2 30472332 to 30474845 2513 CpG island CpG island 11438
Ier5l 2 30472631 to 30474199 1568 - protein coding gene immediate early response 5-like
Tssr23382 2 30473474 to 30473521 47 - TSS region transcription start site region 23382
Tssr23383 2 30474212 to 30474222 10 - TSS region transcription start site region 23383
Gm31291 2 30475447 to 30489052 13605 + lncRNA gene predicted gene, 31291
Gm39781 2 30497826 to 30502128 4302 + lncRNA gene predicted gene, 39781
Gm14487 2 30534729 to 30539022 4293 + lincRNA gene predicted gene 14487
Gm31585 2 30544429 to 30547844 3415 + lncRNA gene predicted gene, 31585
Cpgi11439 2 30545038 to 30545552 514 CpG island CpG island 11439
Tssr23384 2 30556582 to 30556617 35 - TSS region transcription start site region 23384
Cpgi11440 2 30594595 to 30594836 241 CpG island CpG island 11440
Tssr23385 2 30594901 to 30594917 16 - TSS region transcription start site region 23385
Tssr17128 2 30595037 to 30595048 11 + TSS region transcription start site region 17128
Cstad 2 30595044 to 30608945 13901 + protein coding gene CSA-conditional, T cell activation-dependent protein
Cpgi11441 2 30595189 to 30595342 153 CpG island CpG island 11441
D2Mit33 2 30602309 to 30602488 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 33
D2Dcr46 2 30602347 to 30602475 128 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 46
Cpgi11442 2 30604978 to 30605135 157 CpG island CpG island 11442
9330198N18Rik 2 30629210 to 30643463 14253 + lincRNA gene RIKEN cDNA 9330198N18 gene
Tssr23386 2 30629891 to 30629895 4 - TSS region transcription start site region 23386
Tssr17129 2 30636549 to 30636562 13 + TSS region transcription start site region 17129
Gm32316 2 30647544 to 30655643 8099 - lncRNA gene predicted gene, 32316
Tssr17130 2 30654871 to 30654880 9 + TSS region transcription start site region 17130
Cpgi11443 2 30657899 to 30659007 1108 CpG island CpG island 11443
Tssr23387 2 30658420 to 30658434 14 - TSS region transcription start site region 23387
Gm14486 2 30658468 to 30678011 19543 - lincRNA gene predicted gene 14486
Tssr17131 2 30658689 to 30658732 43 + TSS region transcription start site region 17131
Cpgi11444 2 30676537 to 30677446 909 CpG island CpG island 11444
Cpgi11445 2 30687196 to 30687595 399 CpG island CpG island 11445
Cpgi11446 2 30692709 to 30693835 1126 CpG island CpG island 11446
Cpgi11447 2 30707379 to 30708731 1352 CpG island CpG island 11447
Cpgi11448 2 30711340 to 30712492 1152 CpG island CpG island 11448
Tssr17132 2 30712345 to 30712349 4 + TSS region transcription start site region 17132
Gm14488 2 30713147 to 30720057 6910 - unclassified non-coding RNA gene predicted gene 14488
Tssr17133 2 30717480 to 30717509 29 + TSS region transcription start site region 17133
Cpgi11449 2 30718104 to 30718475 371 CpG island CpG island 11449
Tssr17134 2 30718551 to 30718590 39 + TSS region transcription start site region 17134
Cpgi11450 2 30718852 to 30719238 386 CpG island CpG island 11450
Tssr17135 2 30719258 to 30719294 36 + TSS region transcription start site region 17135
Tssr23388 2 30720022 to 30720033 11 - TSS region transcription start site region 23388
Mir3089 2 30721210 to 30721293 83 + miRNA gene microRNA 3089
Gm39782 2 30721563 to 30723783 2220 - lncRNA gene predicted gene, 39782
Cpgi11451 2 30725707 to 30726142 435 CpG island CpG island 11451
Cpgi11452 2 30771145 to 30772233 1088 CpG island CpG island 11452
Gm39783 2 30771515 to 30783618 12103 + lncRNA gene predicted gene, 39783
Gm39784 2 30783661 to 30787232 3571 - lncRNA gene predicted gene, 39784
Cpgi11453 2 30794360 to 30795033 673 CpG island CpG island 11453
1700001O22Rik 2 30795563 to 30803723 8160 - protein coding gene RIKEN cDNA 1700001O22 gene
Tssr23389 2 30796631 to 30796639 8 - TSS region transcription start site region 23389
Tssr23390 2 30796673 to 30796700 27 - TSS region transcription start site region 23390
Cpgi11454 2 30800844 to 30801944 1100 CpG island CpG island 11454
Tssr23391 2 30801698 to 30801742 44 - TSS region transcription start site region 23391