Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:30135590-30437035

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbc1d13 2 30133750 to 30152013 18263 + protein coding gene TBC1 domain family, member 13
Tssr17090 2 30146806 to 30146825 19 + TSS region transcription start site region 17090
Slc39a1-ps 2 30159398 to 30160366 968 + pseudogene solute carrier family 39 (zinc transporter), member 1, pseudogene
Gm31080 2 30162606 to 30170335 7729 + lncRNA gene predicted gene, 31080
Cpgi11428 2 30171151 to 30172470 1319 CpG island CpG island 11428
Tssr17091 2 30171486 to 30171497 11 + TSS region transcription start site region 17091
Endog 2 30171493 to 30174069 2576 + protein coding gene endonuclease G
Tssr17092 2 30171502 to 30171520 18 + TSS region transcription start site region 17092
Tssr17093 2 30171529 to 30171536 7 + TSS region transcription start site region 17093
Tssr17094 2 30171543 to 30171554 11 + TSS region transcription start site region 17094
Tssr17095 2 30171557 to 30171564 7 + TSS region transcription start site region 17095
Spout1 2 30173453 to 30178459 5006 - protein coding gene SPOUT domain containing methyltransferase 1
Cpgi11429 2 30178005 to 30178756 751 CpG island CpG island 11429
Tssr23353 2 30178422 to 30178473 51 - TSS region transcription start site region 23353
Tssr23354 2 30178588 to 30178600 12 - TSS region transcription start site region 23354
Tssr17096 2 30184825 to 30184831 6 + TSS region transcription start site region 17096
Kyat1 2 30185124 to 30205847 20723 - protein coding gene kynurenine aminotransferase 1
Tssr23355 2 30194136 to 30194143 7 - TSS region transcription start site region 23355
Tssr23356 2 30194151 to 30194167 16 - TSS region transcription start site region 23356
Cpgi11430 2 30205595 to 30206291 696 CpG island CpG island 11430
Tssr23357 2 30205674 to 30205693 19 - TSS region transcription start site region 23357
Tssr23358 2 30205699 to 30205716 17 - TSS region transcription start site region 23358
Tssr23359 2 30205728 to 30205741 13 - TSS region transcription start site region 23359
Tssr23360 2 30205772 to 30205791 19 - TSS region transcription start site region 23360
Tssr23361 2 30205794 to 30205835 41 - TSS region transcription start site region 23361
Gm31201 2 30205887 to 30209507 3620 + lncRNA gene predicted gene, 31201
Cpgi11431 2 30237013 to 30238600 1587 CpG island CpG island 11431
1700084E18Rik 2 30237197 to 30237631 434 - antisense lncRNA gene RIKEN cDNA 1700084E18 gene
Tssr23362 2 30237626 to 30237655 29 - TSS region transcription start site region 23362
Tssr17097 2 30237665 to 30237672 7 + TSS region transcription start site region 17097
Tssr17098 2 30237680 to 30237747 67 + TSS region transcription start site region 17098
Lrrc8a 2 30237769 to 30263790 26021 + protein coding gene leucine rich repeat containing 8A
Gm28035 2 30240567 to 30282148 41581 + protein coding gene predicted gene, 28035
Tssr17099 2 30262798 to 30262802 4 + TSS region transcription start site region 17099
Tssr17100 2 30263059 to 30263106 47 + TSS region transcription start site region 17100
Phyhd1 2 30266203 to 30282149 15946 + protein coding gene phytanoyl-CoA dioxygenase domain containing 1
Tssr17101 2 30266513 to 30266564 51 + TSS region transcription start site region 17101
Tssr17102 2 30266569 to 30266592 23 + TSS region transcription start site region 17102
Tssr17103 2 30266803 to 30266886 83 + TSS region transcription start site region 17103
Tssr17104 2 30267368 to 30267400 32 + TSS region transcription start site region 17104
Gm28038 2 30281043 to 30301078 20035 + protein coding gene predicted gene, 28038
Dolk 2 30284231 to 30286334 2103 - protein coding gene dolichol kinase
Cpgi11432 2 30285590 to 30287035 1445 CpG island CpG island 11432
Tssr23363 2 30286312 to 30286349 37 - TSS region transcription start site region 23363
Tssr17105 2 30286383 to 30286394 11 + TSS region transcription start site region 17105
Tssr17106 2 30286406 to 30286442 36 + TSS region transcription start site region 17106
Nup188 2 30286422 to 30344263 57841 + protein coding gene nucleoporin 188
Gm39780 2 30298866 to 30299322 456 + lncRNA gene predicted gene, 39780
Gm14471 2 30306067 to 30323986 17919 - unclassified non-coding RNA gene predicted gene 14471
Tssr17107 2 30312627 to 30312651 24 + TSS region transcription start site region 17107
Tssr17108 2 30322485 to 30322506 21 + TSS region transcription start site region 17108
Sh3glb2 2 30344809 to 30359337 14528 - protein coding gene SH3-domain GRB2-like endophilin B2
Tssr23364 2 30350862 to 30350878 16 - TSS region transcription start site region 23364
Cpgi11433 2 30358651 to 30359680 1029 CpG island CpG island 11433
Tssr23365 2 30359190 to 30359272 82 - TSS region transcription start site region 23365
Tssr23366 2 30359278 to 30359341 63 - TSS region transcription start site region 23366
Cpgi11434 2 30363829 to 30364740 911 CpG island CpG island 11434
Tssr17109 2 30364227 to 30364260 33 + TSS region transcription start site region 17109
Miga2 2 30364233 to 30385521 21288 + protein coding gene mitoguardin 2
Tssr17110 2 30364262 to 30364304 42 + TSS region transcription start site region 17110
Gm47292 2 30367676 to 30367771 95 + miRNA gene predicted gene, 47292
Cpgi11435 2 30391976 to 30393307 1331 CpG island CpG island 11435
Dolpp1 2 30392254 to 30400529 8275 + protein coding gene dolichyl pyrophosphate phosphatase 1
Tssr17111 2 30392261 to 30392305 44 + TSS region transcription start site region 17111
Tssr17112 2 30392405 to 30392440 35 + TSS region transcription start site region 17112
Tssr17113 2 30392447 to 30392458 11 + TSS region transcription start site region 17113
Tssr17114 2 30396442 to 30396462 20 + TSS region transcription start site region 17114
Crat 2 30400476 to 30415748 15272 - protein coding gene carnitine acetyltransferase
Tssr23367 2 30406402 to 30406415 13 - TSS region transcription start site region 23367
Tssr23368 2 30413270 to 30413299 29 - TSS region transcription start site region 23368
Gm16323 2 30413716 to 30415338 1622 + antisense lncRNA gene predicted gene 16323
Tssr23369 2 30414104 to 30414118 14 - TSS region transcription start site region 23369
Tssr23370 2 30414169 to 30414180 11 - TSS region transcription start site region 23370
Cpgi11436 2 30415091 to 30416679 1588 CpG island CpG island 11436
Tssr23371 2 30415302 to 30415368 66 - TSS region transcription start site region 23371
Tssr23372 2 30415389 to 30415410 21 - TSS region transcription start site region 23372
Tssr23373 2 30415418 to 30415429 11 - TSS region transcription start site region 23373
Tssr23374 2 30415438 to 30415449 11 - TSS region transcription start site region 23374
Tssr23375 2 30415460 to 30415505 45 - TSS region transcription start site region 23375
Tssr23376 2 30415509 to 30415560 51 - TSS region transcription start site region 23376
Tssr23377 2 30415572 to 30415612 40 - TSS region transcription start site region 23377
Tssr23378 2 30415614 to 30415624 10 - TSS region transcription start site region 23378
Tssr17115 2 30415618 to 30415683 65 + TSS region transcription start site region 17115
Tssr23379 2 30415634 to 30415708 74 - TSS region transcription start site region 23379
Tssr23380 2 30415767 to 30415774 7 - TSS region transcription start site region 23380
Tssr23381 2 30416003 to 30416045 42 - TSS region transcription start site region 23381
Tssr17116 2 30416031 to 30416077 46 + TSS region transcription start site region 17116
Ptpa 2 30416050 to 30447807 31757 + protein coding gene protein phosphatase 2 protein activator
Tssr17117 2 30416080 to 30416090 10 + TSS region transcription start site region 17117
Tssr17118 2 30416096 to 30416147 51 + TSS region transcription start site region 17118
Tssr17119 2 30416187 to 30416221 34 + TSS region transcription start site region 17119
Tssr17120 2 30430042 to 30430047 5 + TSS region transcription start site region 17120