Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:30073588-30283600

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11424 2 30077129 to 30078160 1031 CpG island CpG island 11424
Pkn3 2 30077684 to 30091022 13338 + protein coding gene protein kinase N3
Tssr17085 2 30080432 to 30080473 41 + TSS region transcription start site region 17085
Zdhhc12 2 30090944 to 30093635 2691 - protein coding gene zinc finger, DHHC domain containing 12
Cpgi11425 2 30093299 to 30094087 788 CpG island CpG island 11425
Tssr23344 2 30093533 to 30093544 11 - TSS region transcription start site region 23344
Tssr23345 2 30093561 to 30093603 42 - TSS region transcription start site region 23345
Tssr23346 2 30093607 to 30093641 34 - TSS region transcription start site region 23346
Tssr23347 2 30093642 to 30093679 37 - TSS region transcription start site region 23347
Zer1 2 30097283 to 30124585 27302 - protein coding gene zyg-11 related, cell cycle regulator
Cpgi11426 2 30124059 to 30124965 906 CpG island CpG island 11426
Gm3146 2 30124071 to 30126328 2257 unclassified gene predicted gene 3146
Tssr23348 2 30124459 to 30124470 11 - TSS region transcription start site region 23348
Tssr23349 2 30124477 to 30124509 32 - TSS region transcription start site region 23349
Tssr23350 2 30124529 to 30124587 58 - TSS region transcription start site region 23350
Tssr23351 2 30124774 to 30124807 33 - TSS region transcription start site region 23351
Cpgi11427 2 30133501 to 30134276 775 CpG island CpG island 11427
Tssr23352 2 30133661 to 30133690 29 - TSS region transcription start site region 23352
Tbc1d13 2 30133750 to 30152013 18263 + protein coding gene TBC1 domain family, member 13
Tssr17086 2 30133751 to 30133806 55 + TSS region transcription start site region 17086
Tssr17087 2 30133849 to 30133865 16 + TSS region transcription start site region 17087
Tssr17088 2 30133873 to 30133892 19 + TSS region transcription start site region 17088
Tssr17089 2 30134681 to 30134709 28 + TSS region transcription start site region 17089
Tssr17090 2 30146806 to 30146825 19 + TSS region transcription start site region 17090
Slc39a1-ps 2 30159398 to 30160366 968 + pseudogene solute carrier family 39 (zinc transporter), member 1, pseudogene
Gm31080 2 30162606 to 30170335 7729 + lncRNA gene predicted gene, 31080
Cpgi11428 2 30171151 to 30172470 1319 CpG island CpG island 11428
Tssr17091 2 30171486 to 30171497 11 + TSS region transcription start site region 17091
Endog 2 30171493 to 30174069 2576 + protein coding gene endonuclease G
Tssr17092 2 30171502 to 30171520 18 + TSS region transcription start site region 17092
Tssr17093 2 30171529 to 30171536 7 + TSS region transcription start site region 17093
Tssr17094 2 30171543 to 30171554 11 + TSS region transcription start site region 17094
Tssr17095 2 30171557 to 30171564 7 + TSS region transcription start site region 17095
Spout1 2 30173453 to 30178459 5006 - protein coding gene SPOUT domain containing methyltransferase 1
Cpgi11429 2 30178005 to 30178756 751 CpG island CpG island 11429
Tssr23353 2 30178422 to 30178473 51 - TSS region transcription start site region 23353
Tssr23354 2 30178588 to 30178600 12 - TSS region transcription start site region 23354
Tssr17096 2 30184825 to 30184831 6 + TSS region transcription start site region 17096
Kyat1 2 30185124 to 30205847 20723 - protein coding gene kynurenine aminotransferase 1
Tssr23355 2 30194136 to 30194143 7 - TSS region transcription start site region 23355
Tssr23356 2 30194151 to 30194167 16 - TSS region transcription start site region 23356
Cpgi11430 2 30205595 to 30206291 696 CpG island CpG island 11430
Tssr23357 2 30205674 to 30205693 19 - TSS region transcription start site region 23357
Tssr23358 2 30205699 to 30205716 17 - TSS region transcription start site region 23358
Tssr23359 2 30205728 to 30205741 13 - TSS region transcription start site region 23359
Tssr23360 2 30205772 to 30205791 19 - TSS region transcription start site region 23360
Tssr23361 2 30205794 to 30205835 41 - TSS region transcription start site region 23361
Gm31201 2 30205887 to 30209507 3620 + lncRNA gene predicted gene, 31201
Cpgi11431 2 30237013 to 30238600 1587 CpG island CpG island 11431
1700084E18Rik 2 30237197 to 30237631 434 - antisense lncRNA gene RIKEN cDNA 1700084E18 gene
Tssr23362 2 30237626 to 30237655 29 - TSS region transcription start site region 23362
Tssr17097 2 30237665 to 30237672 7 + TSS region transcription start site region 17097
Tssr17098 2 30237680 to 30237747 67 + TSS region transcription start site region 17098
Lrrc8a 2 30237769 to 30263790 26021 + protein coding gene leucine rich repeat containing 8A
Gm28035 2 30240567 to 30282148 41581 + protein coding gene predicted gene, 28035
Tssr17099 2 30262798 to 30262802 4 + TSS region transcription start site region 17099
Tssr17100 2 30263059 to 30263106 47 + TSS region transcription start site region 17100
Phyhd1 2 30266203 to 30282149 15946 + protein coding gene phytanoyl-CoA dioxygenase domain containing 1
Tssr17101 2 30266513 to 30266564 51 + TSS region transcription start site region 17101
Tssr17102 2 30266569 to 30266592 23 + TSS region transcription start site region 17102
Tssr17103 2 30266803 to 30266886 83 + TSS region transcription start site region 17103
Tssr17104 2 30267368 to 30267400 32 + TSS region transcription start site region 17104
Gm28038 2 30281043 to 30301078 20035 + protein coding gene predicted gene, 28038