Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:29827769-30673790

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11415 2 29827219 to 29827907 688 CpG island CpG island 11415
Urm1 2 29827389 to 29844996 17607 + protein coding gene ubiquitin related modifier 1
Cpgi11416 2 29845351 to 29846628 1277 CpG island CpG island 11416
Mir219a-2 2 29845631 to 29845727 96 - miRNA gene microRNA 219a-2
Tssr23337 2 29845641 to 29845645 4 - TSS region transcription start site region 23337
Mir219b 2 29845647 to 29845711 64 + miRNA gene microRNA 219b
Tssr23338 2 29846302 to 29846316 14 - TSS region transcription start site region 23338
Tssr23339 2 29846476 to 29846494 18 - TSS region transcription start site region 23339
Tssr17031 2 29858247 to 29858268 21 + TSS region transcription start site region 17031
2600006K01Rik 2 29868723 to 29870317 1594 - antisense lncRNA gene RIKEN cDNA 2600006K01 gene
Cpgi11417 2 29868951 to 29869727 776 CpG island CpG island 11417
Cercam 2 29869164 to 29882840 13676 + protein coding gene cerebral endothelial cell adhesion molecule
Tssr17032 2 29869484 to 29869535 51 + TSS region transcription start site region 17032
Tssr23340 2 29870188 to 29870223 35 - TSS region transcription start site region 23340
Tssr17033 2 29881983 to 29881994 11 + TSS region transcription start site region 17033
Cpgi11418 2 29888988 to 29890932 1944 CpG island CpG island 11418
Tssr17034 2 29889199 to 29889206 7 + TSS region transcription start site region 17034
Tssr17035 2 29889217 to 29889243 26 + TSS region transcription start site region 17035
Odf2 2 29889221 to 29931746 42525 + protein coding gene outer dense fiber of sperm tails 2
Tssr452 2 29889709 to 29889716 7 + TSS region transcription start site region 452
Tssr17036 2 29889742 to 29889753 11 + TSS region transcription start site region 17036
Tssr17037 2 29889802 to 29889836 34 + TSS region transcription start site region 17037
Tssr453 2 29889988 to 29889993 5 + TSS region transcription start site region 453
Tssr454 2 29890005 to 29890016 11 + TSS region transcription start site region 454
Tssr455 2 29890038 to 29890045 7 + TSS region transcription start site region 455
Tssr17038 2 29890066 to 29890081 15 + TSS region transcription start site region 17038
Tssr17039 2 29890096 to 29890107 11 + TSS region transcription start site region 17039
Tssr456 2 29890110 to 29890114 4 + TSS region transcription start site region 456
Tssr23341 2 29890334 to 29890370 36 - TSS region transcription start site region 23341
Tssr17040 2 29890446 to 29890511 65 + TSS region transcription start site region 17040
Tssr17041 2 29890520 to 29890531 11 + TSS region transcription start site region 17041
Tssr17042 2 29890534 to 29890545 11 + TSS region transcription start site region 17042
Tssr17043 2 29890555 to 29890556 1 + TSS region transcription start site region 17043
Tssr17044 2 29890698 to 29890710 12 + TSS region transcription start site region 17044
Tssr17045 2 29890861 to 29890868 7 + TSS region transcription start site region 17045
Tssr17046 2 29891985 to 29892007 22 + TSS region transcription start site region 17046
Tssr17047 2 29893054 to 29893073 19 + TSS region transcription start site region 17047
Tssr457 2 29903308 to 29903319 11 + TSS region transcription start site region 457
Tssr17048 2 29903542 to 29903557 15 + TSS region transcription start site region 17048
Tssr17049 2 29903568 to 29903596 28 + TSS region transcription start site region 17049
Tssr17050 2 29914445 to 29914449 4 + TSS region transcription start site region 17050
Tssr23342 2 29914832 to 29914846 14 - TSS region transcription start site region 23342
Tssr17051 2 29920768 to 29920797 29 + TSS region transcription start site region 17051
Gm23865 2 29931427 to 29931523 96 - snRNA gene predicted gene, 23865
Cpgi11419 2 29935167 to 29935964 797 CpG island CpG island 11419
Gle1 2 29935409 to 29959432 24023 + protein coding gene GLE1 RNA export mediator (yeast)
Tssr17052 2 29935413 to 29935499 86 + TSS region transcription start site region 17052
Gm39779 2 29962174 to 29965035 2861 + lncRNA gene predicted gene, 39779
Tssr17053 2 29963424 to 29963428 4 + TSS region transcription start site region 17053
Cpgi11420 2 29965165 to 29966224 1059 CpG island CpG island 11420
Tssr17054 2 29965315 to 29965328 13 + TSS region transcription start site region 17054
Sptan1 2 29965560 to 30031451 65891 + protein coding gene spectrin alpha, non-erythrocytic 1
Tssr17055 2 29965669 to 29965688 19 + TSS region transcription start site region 17055
Tssr17056 2 29966058 to 29966070 12 + TSS region transcription start site region 17056
Tssr17057 2 29966365 to 29966389 24 + TSS region transcription start site region 17057
Tssr17058 2 29984119 to 29984123 4 + TSS region transcription start site region 17058
Mir6997 2 29995950 to 29996020 70 + miRNA gene microRNA 6997
Tssr17059 2 29999997 to 30000012 15 + TSS region transcription start site region 17059
Tssr17060 2 30018863 to 30018867 4 + TSS region transcription start site region 17060
Tssr17061 2 30021058 to 30021062 4 + TSS region transcription start site region 17061
Wdr34 2 30031551 to 30048879 17328 - protein coding gene WD repeat domain 34
Cpgi11421 2 30048209 to 30049298 1089 CpG island CpG island 11421
Tssr23343 2 30048827 to 30048891 64 - TSS region transcription start site region 23343
2410198J08Rik 2 30048961 to 30049377 416 unclassified gene RIKEN cDNA 2410198J08 gene
Tssr17062 2 30061806 to 30061815 9 + TSS region transcription start site region 17062
Cpgi11422 2 30061816 to 30063260 1444 CpG island CpG island 11422
Tssr17063 2 30061838 to 30061841 3 + TSS region transcription start site region 17063
Tssr17064 2 30061847 to 30061859 12 + TSS region transcription start site region 17064
Tssr17065 2 30061861 to 30061864 3 + TSS region transcription start site region 17065
Tssr17066 2 30061882 to 30061891 9 + TSS region transcription start site region 17066
Tssr17067 2 30061905 to 30061912 7 + TSS region transcription start site region 17067
Tssr17068 2 30061920 to 30061929 9 + TSS region transcription start site region 17068
Tssr17069 2 30061949 to 30061965 16 + TSS region transcription start site region 17069
Set 2 30061996 to 30072577 10581 + protein coding gene SET nuclear oncogene
Tssr17070 2 30062017 to 30062043 26 + TSS region transcription start site region 17070
Tssr17071 2 30062045 to 30062078 33 + TSS region transcription start site region 17071
Tssr17072 2 30062090 to 30062098 8 + TSS region transcription start site region 17072
Tssr17073 2 30062522 to 30062545 23 + TSS region transcription start site region 17073
Tssr17074 2 30062551 to 30062570 19 + TSS region transcription start site region 17074
Tssr17075 2 30062718 to 30062732 14 + TSS region transcription start site region 17075
Cpgi11423 2 30065917 to 30067694 1777 CpG island CpG island 11423
Tssr17076 2 30066419 to 30066461 42 + TSS region transcription start site region 17076
Tssr17077 2 30066488 to 30066530 42 + TSS region transcription start site region 17077
Tssr17078 2 30066538 to 30066567 29 + TSS region transcription start site region 17078
Tssr17079 2 30066695 to 30066707 12 + TSS region transcription start site region 17079
Tssr17080 2 30066709 to 30066723 14 + TSS region transcription start site region 17080
Tssr17081 2 30066782 to 30066798 16 + TSS region transcription start site region 17081
Tssr17082 2 30066799 to 30066821 22 + TSS region transcription start site region 17082
Tssr17083 2 30066832 to 30066843 11 + TSS region transcription start site region 17083
Tssr17084 2 30067159 to 30067187 28 + TSS region transcription start site region 17084
Cpgi11424 2 30077129 to 30078160 1031 CpG island CpG island 11424
Pkn3 2 30077684 to 30091022 13338 + protein coding gene protein kinase N3
Tssr17085 2 30080432 to 30080473 41 + TSS region transcription start site region 17085
Zdhhc12 2 30090944 to 30093635 2691 - protein coding gene zinc finger, DHHC domain containing 12
Cpgi11425 2 30093299 to 30094087 788 CpG island CpG island 11425
Tssr23344 2 30093533 to 30093544 11 - TSS region transcription start site region 23344
Tssr23345 2 30093561 to 30093603 42 - TSS region transcription start site region 23345
Tssr23346 2 30093607 to 30093641 34 - TSS region transcription start site region 23346
Tssr23347 2 30093642 to 30093679 37 - TSS region transcription start site region 23347
Zer1 2 30097283 to 30124585 27302 - protein coding gene zyg-11 related, cell cycle regulator
Cpgi11426 2 30124059 to 30124965 906 CpG island CpG island 11426
Gm3146 2 30124071 to 30126328 2257 unclassified gene predicted gene 3146
Tssr23348 2 30124459 to 30124470 11 - TSS region transcription start site region 23348
Tssr23349 2 30124477 to 30124509 32 - TSS region transcription start site region 23349
Tssr23350 2 30124529 to 30124587 58 - TSS region transcription start site region 23350
Tssr23351 2 30124774 to 30124807 33 - TSS region transcription start site region 23351
Cpgi11427 2 30133501 to 30134276 775 CpG island CpG island 11427
Tssr23352 2 30133661 to 30133690 29 - TSS region transcription start site region 23352
Tbc1d13 2 30133750 to 30152013 18263 + protein coding gene TBC1 domain family, member 13
Tssr17086 2 30133751 to 30133806 55 + TSS region transcription start site region 17086
Tssr17087 2 30133849 to 30133865 16 + TSS region transcription start site region 17087
Tssr17088 2 30133873 to 30133892 19 + TSS region transcription start site region 17088
Tssr17089 2 30134681 to 30134709 28 + TSS region transcription start site region 17089
Tssr17090 2 30146806 to 30146825 19 + TSS region transcription start site region 17090
Slc39a1-ps 2 30159398 to 30160366 968 + pseudogene solute carrier family 39 (zinc transporter), member 1, pseudogene
Gm31080 2 30162606 to 30170335 7729 + lncRNA gene predicted gene, 31080
Cpgi11428 2 30171151 to 30172470 1319 CpG island CpG island 11428
Tssr17091 2 30171486 to 30171497 11 + TSS region transcription start site region 17091
Endog 2 30171493 to 30174069 2576 + protein coding gene endonuclease G
Tssr17092 2 30171502 to 30171520 18 + TSS region transcription start site region 17092
Tssr17093 2 30171529 to 30171536 7 + TSS region transcription start site region 17093
Tssr17094 2 30171543 to 30171554 11 + TSS region transcription start site region 17094
Tssr17095 2 30171557 to 30171564 7 + TSS region transcription start site region 17095
Spout1 2 30173453 to 30178459 5006 - protein coding gene SPOUT domain containing methyltransferase 1
Cpgi11429 2 30178005 to 30178756 751 CpG island CpG island 11429
Tssr23353 2 30178422 to 30178473 51 - TSS region transcription start site region 23353
Tssr23354 2 30178588 to 30178600 12 - TSS region transcription start site region 23354
Tssr17096 2 30184825 to 30184831 6 + TSS region transcription start site region 17096
Kyat1 2 30185124 to 30205847 20723 - protein coding gene kynurenine aminotransferase 1
Tssr23355 2 30194136 to 30194143 7 - TSS region transcription start site region 23355
Tssr23356 2 30194151 to 30194167 16 - TSS region transcription start site region 23356
Cpgi11430 2 30205595 to 30206291 696 CpG island CpG island 11430
Tssr23357 2 30205674 to 30205693 19 - TSS region transcription start site region 23357
Tssr23358 2 30205699 to 30205716 17 - TSS region transcription start site region 23358
Tssr23359 2 30205728 to 30205741 13 - TSS region transcription start site region 23359
Tssr23360 2 30205772 to 30205791 19 - TSS region transcription start site region 23360
Tssr23361 2 30205794 to 30205835 41 - TSS region transcription start site region 23361
Gm31201 2 30205887 to 30209507 3620 + lncRNA gene predicted gene, 31201
Cpgi11431 2 30237013 to 30238600 1587 CpG island CpG island 11431
1700084E18Rik 2 30237197 to 30237631 434 - antisense lncRNA gene RIKEN cDNA 1700084E18 gene
Tssr23362 2 30237626 to 30237655 29 - TSS region transcription start site region 23362
Tssr17097 2 30237665 to 30237672 7 + TSS region transcription start site region 17097
Tssr17098 2 30237680 to 30237747 67 + TSS region transcription start site region 17098
Lrrc8a 2 30237769 to 30263790 26021 + protein coding gene leucine rich repeat containing 8A
Gm28035 2 30240567 to 30282148 41581 + protein coding gene predicted gene, 28035
Tssr17099 2 30262798 to 30262802 4 + TSS region transcription start site region 17099
Tssr17100 2 30263059 to 30263106 47 + TSS region transcription start site region 17100
Phyhd1 2 30266203 to 30282149 15946 + protein coding gene phytanoyl-CoA dioxygenase domain containing 1
Tssr17101 2 30266513 to 30266564 51 + TSS region transcription start site region 17101
Tssr17102 2 30266569 to 30266592 23 + TSS region transcription start site region 17102
Tssr17103 2 30266803 to 30266886 83 + TSS region transcription start site region 17103
Tssr17104 2 30267368 to 30267400 32 + TSS region transcription start site region 17104
Gm28038 2 30281043 to 30301078 20035 + protein coding gene predicted gene, 28038
Dolk 2 30284231 to 30286334 2103 - protein coding gene dolichol kinase
Cpgi11432 2 30285590 to 30287035 1445 CpG island CpG island 11432
Tssr23363 2 30286312 to 30286349 37 - TSS region transcription start site region 23363
Tssr17105 2 30286383 to 30286394 11 + TSS region transcription start site region 17105
Tssr17106 2 30286406 to 30286442 36 + TSS region transcription start site region 17106
Nup188 2 30286422 to 30344263 57841 + protein coding gene nucleoporin 188
Gm39780 2 30298866 to 30299322 456 + lncRNA gene predicted gene, 39780
Gm14471 2 30306067 to 30323986 17919 - unclassified non-coding RNA gene predicted gene 14471
Tssr17107 2 30312627 to 30312651 24 + TSS region transcription start site region 17107
Tssr17108 2 30322485 to 30322506 21 + TSS region transcription start site region 17108
Sh3glb2 2 30344809 to 30359337 14528 - protein coding gene SH3-domain GRB2-like endophilin B2
Tssr23364 2 30350862 to 30350878 16 - TSS region transcription start site region 23364
Cpgi11433 2 30358651 to 30359680 1029 CpG island CpG island 11433
Tssr23365 2 30359190 to 30359272 82 - TSS region transcription start site region 23365
Tssr23366 2 30359278 to 30359341 63 - TSS region transcription start site region 23366
Cpgi11434 2 30363829 to 30364740 911 CpG island CpG island 11434
Tssr17109 2 30364227 to 30364260 33 + TSS region transcription start site region 17109
Miga2 2 30364233 to 30385521 21288 + protein coding gene mitoguardin 2
Tssr17110 2 30364262 to 30364304 42 + TSS region transcription start site region 17110
Gm47292 2 30367676 to 30367771 95 + miRNA gene predicted gene, 47292
Cpgi11435 2 30391976 to 30393307 1331 CpG island CpG island 11435
Dolpp1 2 30392254 to 30400529 8275 + protein coding gene dolichyl pyrophosphate phosphatase 1
Tssr17111 2 30392261 to 30392305 44 + TSS region transcription start site region 17111
Tssr17112 2 30392405 to 30392440 35 + TSS region transcription start site region 17112
Tssr17113 2 30392447 to 30392458 11 + TSS region transcription start site region 17113
Tssr17114 2 30396442 to 30396462 20 + TSS region transcription start site region 17114
Crat 2 30400476 to 30415748 15272 - protein coding gene carnitine acetyltransferase
Tssr23367 2 30406402 to 30406415 13 - TSS region transcription start site region 23367
Tssr23368 2 30413270 to 30413299 29 - TSS region transcription start site region 23368
Gm16323 2 30413716 to 30415338 1622 + antisense lncRNA gene predicted gene 16323
Tssr23369 2 30414104 to 30414118 14 - TSS region transcription start site region 23369
Tssr23370 2 30414169 to 30414180 11 - TSS region transcription start site region 23370
Cpgi11436 2 30415091 to 30416679 1588 CpG island CpG island 11436
Tssr23371 2 30415302 to 30415368 66 - TSS region transcription start site region 23371
Tssr23372 2 30415389 to 30415410 21 - TSS region transcription start site region 23372
Tssr23373 2 30415418 to 30415429 11 - TSS region transcription start site region 23373
Tssr23374 2 30415438 to 30415449 11 - TSS region transcription start site region 23374
Tssr23375 2 30415460 to 30415505 45 - TSS region transcription start site region 23375
Tssr23376 2 30415509 to 30415560 51 - TSS region transcription start site region 23376
Tssr23377 2 30415572 to 30415612 40 - TSS region transcription start site region 23377
Tssr23378 2 30415614 to 30415624 10 - TSS region transcription start site region 23378
Tssr17115 2 30415618 to 30415683 65 + TSS region transcription start site region 17115
Tssr23379 2 30415634 to 30415708 74 - TSS region transcription start site region 23379
Tssr23380 2 30415767 to 30415774 7 - TSS region transcription start site region 23380
Tssr23381 2 30416003 to 30416045 42 - TSS region transcription start site region 23381
Tssr17116 2 30416031 to 30416077 46 + TSS region transcription start site region 17116
Ptpa 2 30416050 to 30447807 31757 + protein coding gene protein phosphatase 2 protein activator