Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:29711476-29981494

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapgef1 2 29619720 to 29740364 120644 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 1
Tssr17014 2 29724027 to 29724029 2 + TSS region transcription start site region 17014
Gm9823 2 29738335 to 29738665 330 - pseudogene predicted gene 9823
Tssr23327 2 29744645 to 29744649 4 - TSS region transcription start site region 23327
Gm13420 2 29744919 to 29751685 6766 - protein coding gene predicted gene 13420
Cpgi11410 2 29747064 to 29747760 696 CpG island CpG island 11410
Cpgi11411 2 29751131 to 29751919 788 CpG island CpG island 11411
Tssr23328 2 29751635 to 29751669 34 - TSS region transcription start site region 23328
Trub2 2 29761223 to 29787708 26485 - protein coding gene TruB pseudouridine (psi) synthase family member 2
Gm13547 2 29761528 to 29764089 2561 + protein coding gene predicted gene 13547
Tssr17015 2 29761555 to 29761567 12 + TSS region transcription start site region 17015
Tssr17016 2 29761606 to 29761611 5 + TSS region transcription start site region 17016
Tssr23329 2 29772163 to 29772172 9 - TSS region transcription start site region 23329
Tssr23330 2 29772191 to 29772196 5 - TSS region transcription start site region 23330
Tssr449 2 29772200 to 29772204 4 - TSS region transcription start site region 449
Tssr23331 2 29772222 to 29772233 11 - TSS region transcription start site region 23331
Tssr23332 2 29772253 to 29772264 11 - TSS region transcription start site region 23332
Tssr450 2 29772549 to 29772556 7 + TSS region transcription start site region 450
Tssr17017 2 29772595 to 29772611 16 + TSS region transcription start site region 17017
Tssr23333 2 29773507 to 29773517 10 - TSS region transcription start site region 23333
Tssr23334 2 29787250 to 29787254 4 - TSS region transcription start site region 23334
Cpgi11412 2 29787377 to 29787673 296 CpG island CpG island 11412
Tssr17018 2 29787482 to 29787511 29 + TSS region transcription start site region 17018
Tssr23335 2 29787628 to 29787680 52 - TSS region transcription start site region 23335
Tssr451 2 29788120 to 29788140 20 - TSS region transcription start site region 451
Cpgi11413 2 29788154 to 29788675 521 CpG island CpG island 11413
Coq4 2 29788187 to 29797743 9556 + protein coding gene coenzyme Q4
Tssr17019 2 29788237 to 29788302 65 + TSS region transcription start site region 17019
Tssr17020 2 29788308 to 29788320 12 + TSS region transcription start site region 17020
Tssr17021 2 29788321 to 29788335 14 + TSS region transcription start site region 17021
Cpgi11414 2 29802447 to 29803301 854 CpG island CpG island 11414
Tssr17022 2 29802626 to 29802647 21 + TSS region transcription start site region 17022
Tssr17023 2 29802655 to 29802693 38 + TSS region transcription start site region 17023
Slc27a4 2 29802680 to 29817522 14842 + protein coding gene solute carrier family 27 (fatty acid transporter), member 4
Tssr17024 2 29802697 to 29802720 23 + TSS region transcription start site region 17024
Tssr17025 2 29802731 to 29802745 14 + TSS region transcription start site region 17025
Tssr17026 2 29802806 to 29802819 13 + TSS region transcription start site region 17026
Tssr17027 2 29802833 to 29802855 22 + TSS region transcription start site region 17027
Tssr17028 2 29803618 to 29803634 16 + TSS region transcription start site region 17028
Tssr17029 2 29803650 to 29803660 10 + TSS region transcription start site region 17029
Tssr23336 2 29827026 to 29827044 18 - TSS region transcription start site region 23336
Cpgi11415 2 29827219 to 29827907 688 CpG island CpG island 11415
Tssr17030 2 29827368 to 29827403 35 + TSS region transcription start site region 17030
Urm1 2 29827389 to 29844996 17607 + protein coding gene ubiquitin related modifier 1
Cpgi11416 2 29845351 to 29846628 1277 CpG island CpG island 11416
Mir219a-2 2 29845631 to 29845727 96 - miRNA gene microRNA 219a-2
Tssr23337 2 29845641 to 29845645 4 - TSS region transcription start site region 23337
Mir219b 2 29845647 to 29845711 64 + miRNA gene microRNA 219b
Tssr23338 2 29846302 to 29846316 14 - TSS region transcription start site region 23338
Tssr23339 2 29846476 to 29846494 18 - TSS region transcription start site region 23339
Tssr17031 2 29858247 to 29858268 21 + TSS region transcription start site region 17031
2600006K01Rik 2 29868723 to 29870317 1594 - antisense lncRNA gene RIKEN cDNA 2600006K01 gene
Cpgi11417 2 29868951 to 29869727 776 CpG island CpG island 11417
Cercam 2 29869164 to 29882840 13676 + protein coding gene cerebral endothelial cell adhesion molecule
Tssr17032 2 29869484 to 29869535 51 + TSS region transcription start site region 17032
Tssr23340 2 29870188 to 29870223 35 - TSS region transcription start site region 23340
Tssr17033 2 29881983 to 29881994 11 + TSS region transcription start site region 17033
Cpgi11418 2 29888988 to 29890932 1944 CpG island CpG island 11418
Tssr17034 2 29889199 to 29889206 7 + TSS region transcription start site region 17034
Tssr17035 2 29889217 to 29889243 26 + TSS region transcription start site region 17035
Odf2 2 29889221 to 29931746 42525 + protein coding gene outer dense fiber of sperm tails 2
Tssr452 2 29889709 to 29889716 7 + TSS region transcription start site region 452
Tssr17036 2 29889742 to 29889753 11 + TSS region transcription start site region 17036
Tssr17037 2 29889802 to 29889836 34 + TSS region transcription start site region 17037
Tssr453 2 29889988 to 29889993 5 + TSS region transcription start site region 453
Tssr454 2 29890005 to 29890016 11 + TSS region transcription start site region 454
Tssr455 2 29890038 to 29890045 7 + TSS region transcription start site region 455
Tssr17038 2 29890066 to 29890081 15 + TSS region transcription start site region 17038
Tssr17039 2 29890096 to 29890107 11 + TSS region transcription start site region 17039
Tssr456 2 29890110 to 29890114 4 + TSS region transcription start site region 456
Tssr23341 2 29890334 to 29890370 36 - TSS region transcription start site region 23341
Tssr17040 2 29890446 to 29890511 65 + TSS region transcription start site region 17040
Tssr17041 2 29890520 to 29890531 11 + TSS region transcription start site region 17041
Tssr17042 2 29890534 to 29890545 11 + TSS region transcription start site region 17042
Tssr17043 2 29890555 to 29890556 1 + TSS region transcription start site region 17043
Tssr17044 2 29890698 to 29890710 12 + TSS region transcription start site region 17044
Tssr17045 2 29890861 to 29890868 7 + TSS region transcription start site region 17045
Tssr17046 2 29891985 to 29892007 22 + TSS region transcription start site region 17046
Tssr17047 2 29893054 to 29893073 19 + TSS region transcription start site region 17047
Tssr457 2 29903308 to 29903319 11 + TSS region transcription start site region 457
Tssr17048 2 29903542 to 29903557 15 + TSS region transcription start site region 17048
Tssr17049 2 29903568 to 29903596 28 + TSS region transcription start site region 17049
Tssr17050 2 29914445 to 29914449 4 + TSS region transcription start site region 17050
Tssr23342 2 29914832 to 29914846 14 - TSS region transcription start site region 23342
Tssr17051 2 29920768 to 29920797 29 + TSS region transcription start site region 17051
Gm23865 2 29931427 to 29931523 96 - snRNA gene predicted gene, 23865
Cpgi11419 2 29935167 to 29935964 797 CpG island CpG island 11419
Gle1 2 29935409 to 29959432 24023 + protein coding gene GLE1 RNA export mediator (yeast)
Tssr17052 2 29935413 to 29935499 86 + TSS region transcription start site region 17052
Gm39779 2 29962174 to 29965035 2861 + lncRNA gene predicted gene, 39779
Tssr17053 2 29963424 to 29963428 4 + TSS region transcription start site region 17053
Cpgi11420 2 29965165 to 29966224 1059 CpG island CpG island 11420
Tssr17054 2 29965315 to 29965328 13 + TSS region transcription start site region 17054
Sptan1 2 29965560 to 30031451 65891 + protein coding gene spectrin alpha, non-erythrocytic 1
Tssr17055 2 29965669 to 29965688 19 + TSS region transcription start site region 17055
Tssr17056 2 29966058 to 29966070 12 + TSS region transcription start site region 17056
Tssr17057 2 29966365 to 29966389 24 + TSS region transcription start site region 17057