Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:29359189-29880552

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Med27 2 29346819 to 29524793 177974 + protein coding gene mediator complex subunit 27
Gm13402 2 29349842 to 29396459 46617 - antisense lncRNA gene predicted gene 13402
Tssr17002 2 29362921 to 29362924 3 + TSS region transcription start site region 17002
D2Mit153 2 29414846 to 29414972 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 153
D2Mit295 2 29417935 to 29418043 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 295
D2Mit217 2 29439339 to 29439466 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 217
Tssr17003 2 29457366 to 29457370 4 + TSS region transcription start site region 17003
Gm24976 2 29459194 to 29459328 134 + rRNA gene predicted gene, 24976
Mir133c 2 29475215 to 29475294 79 - miRNA gene microRNA 133c
Gm13401 2 29498212 to 29498502 290 + pseudogene predicted gene 13401
Gm30761 2 29542637 to 29546756 4119 - lncRNA gene predicted gene, 30761
Cpgi11409 2 29619189 to 29620552 1363 CpG island CpG island 11409
Tssr17004 2 29619692 to 29619825 133 + TSS region transcription start site region 17004
Rapgef1 2 29619720 to 29740364 120644 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 1
Tssr23322 2 29620527 to 29620546 19 - TSS region transcription start site region 23322
Tssr23323 2 29621190 to 29621199 9 - TSS region transcription start site region 23323
Tssr23324 2 29621210 to 29621255 45 - TSS region transcription start site region 23324
Tssr17005 2 29621436 to 29621460 24 + TSS region transcription start site region 17005
Tssr23325 2 29623552 to 29623583 31 - TSS region transcription start site region 23325
Tssr23326 2 29624804 to 29624810 6 - TSS region transcription start site region 23326
Tssr17006 2 29625060 to 29625072 12 + TSS region transcription start site region 17006
Tssr17007 2 29629755 to 29629764 9 + TSS region transcription start site region 17007
Tssr17008 2 29643665 to 29643681 16 + TSS region transcription start site region 17008
Tssr17009 2 29643698 to 29643712 14 + TSS region transcription start site region 17009
Tssr17010 2 29643738 to 29643757 19 + TSS region transcription start site region 17010
Tssr17011 2 29643763 to 29643782 19 + TSS region transcription start site region 17011
Tssr17012 2 29643788 to 29643805 17 + TSS region transcription start site region 17012
Tssr17013 2 29699787 to 29699808 21 + TSS region transcription start site region 17013
Tssr17014 2 29724027 to 29724029 2 + TSS region transcription start site region 17014
Gm9823 2 29738335 to 29738665 330 - pseudogene predicted gene 9823
Tssr23327 2 29744645 to 29744649 4 - TSS region transcription start site region 23327
Gm13420 2 29744919 to 29751685 6766 - protein coding gene predicted gene 13420
Cpgi11410 2 29747064 to 29747760 696 CpG island CpG island 11410
Cpgi11411 2 29751131 to 29751919 788 CpG island CpG island 11411
Tssr23328 2 29751635 to 29751669 34 - TSS region transcription start site region 23328
Trub2 2 29761223 to 29787708 26485 - protein coding gene TruB pseudouridine (psi) synthase family member 2
Gm13547 2 29761528 to 29764089 2561 + protein coding gene predicted gene 13547
Tssr17015 2 29761555 to 29761567 12 + TSS region transcription start site region 17015
Tssr17016 2 29761606 to 29761611 5 + TSS region transcription start site region 17016
Tssr23329 2 29772163 to 29772172 9 - TSS region transcription start site region 23329
Tssr23330 2 29772191 to 29772196 5 - TSS region transcription start site region 23330
Tssr449 2 29772200 to 29772204 4 - TSS region transcription start site region 449
Tssr23331 2 29772222 to 29772233 11 - TSS region transcription start site region 23331
Tssr23332 2 29772253 to 29772264 11 - TSS region transcription start site region 23332
Tssr450 2 29772549 to 29772556 7 + TSS region transcription start site region 450
Tssr17017 2 29772595 to 29772611 16 + TSS region transcription start site region 17017
Tssr23333 2 29773507 to 29773517 10 - TSS region transcription start site region 23333
Tssr23334 2 29787250 to 29787254 4 - TSS region transcription start site region 23334
Cpgi11412 2 29787377 to 29787673 296 CpG island CpG island 11412
Tssr17018 2 29787482 to 29787511 29 + TSS region transcription start site region 17018
Tssr23335 2 29787628 to 29787680 52 - TSS region transcription start site region 23335
Tssr451 2 29788120 to 29788140 20 - TSS region transcription start site region 451
Cpgi11413 2 29788154 to 29788675 521 CpG island CpG island 11413
Coq4 2 29788187 to 29797743 9556 + protein coding gene coenzyme Q4
Tssr17019 2 29788237 to 29788302 65 + TSS region transcription start site region 17019
Tssr17020 2 29788308 to 29788320 12 + TSS region transcription start site region 17020
Tssr17021 2 29788321 to 29788335 14 + TSS region transcription start site region 17021
Cpgi11414 2 29802447 to 29803301 854 CpG island CpG island 11414
Tssr17022 2 29802626 to 29802647 21 + TSS region transcription start site region 17022
Tssr17023 2 29802655 to 29802693 38 + TSS region transcription start site region 17023
Slc27a4 2 29802680 to 29817522 14842 + protein coding gene solute carrier family 27 (fatty acid transporter), member 4
Tssr17024 2 29802697 to 29802720 23 + TSS region transcription start site region 17024
Tssr17025 2 29802731 to 29802745 14 + TSS region transcription start site region 17025
Tssr17026 2 29802806 to 29802819 13 + TSS region transcription start site region 17026
Tssr17027 2 29802833 to 29802855 22 + TSS region transcription start site region 17027
Tssr17028 2 29803618 to 29803634 16 + TSS region transcription start site region 17028
Tssr17029 2 29803650 to 29803660 10 + TSS region transcription start site region 17029
Tssr23336 2 29827026 to 29827044 18 - TSS region transcription start site region 23336
Cpgi11415 2 29827219 to 29827907 688 CpG island CpG island 11415
Tssr17030 2 29827368 to 29827403 35 + TSS region transcription start site region 17030
Urm1 2 29827389 to 29844996 17607 + protein coding gene ubiquitin related modifier 1
Cpgi11416 2 29845351 to 29846628 1277 CpG island CpG island 11416
Mir219a-2 2 29845631 to 29845727 96 - miRNA gene microRNA 219a-2
Tssr23337 2 29845641 to 29845645 4 - TSS region transcription start site region 23337
Mir219b 2 29845647 to 29845711 64 + miRNA gene microRNA 219b
Tssr23338 2 29846302 to 29846316 14 - TSS region transcription start site region 23338
Tssr23339 2 29846476 to 29846494 18 - TSS region transcription start site region 23339
Tssr17031 2 29858247 to 29858268 21 + TSS region transcription start site region 17031
2600006K01Rik 2 29868723 to 29870317 1594 - antisense lncRNA gene RIKEN cDNA 2600006K01 gene
Cpgi11417 2 29868951 to 29869727 776 CpG island CpG island 11417
Cercam 2 29869164 to 29882840 13676 + protein coding gene cerebral endothelial cell adhesion molecule
Tssr17032 2 29869484 to 29869535 51 + TSS region transcription start site region 17032
Tssr23340 2 29870188 to 29870223 35 - TSS region transcription start site region 23340
T2dm2sa 2 148533014 to 29417935 -119115079 QTL type 2 diabetes mellitus 2 in SMXA RI mice