Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:29172935-29663043

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Setx 2 29124181 to 29182471 58290 + protein coding gene senataxin
Tssr16998 2 29181163 to 29181196 33 + TSS region transcription start site region 16998
Tssr447 2 29189176 to 29189185 9 + TSS region transcription start site region 447
Tssr23307 2 29191509 to 29191551 42 - TSS region transcription start site region 23307
Tssr16999 2 29191631 to 29191644 13 + TSS region transcription start site region 16999
Tssr17000 2 29191645 to 29191654 9 + TSS region transcription start site region 17000
Tssr23308 2 29194196 to 29194197 1 - TSS region transcription start site region 23308
Cpgi11403 2 29194602 to 29195359 757 CpG island CpG island 11403
Tssr448 2 29194605 to 29194627 22 - TSS region transcription start site region 448
Tssr23309 2 29194651 to 29194671 20 - TSS region transcription start site region 23309
Ntng2 2 29194726 to 29248099 53373 - protein coding gene netrin G2
Cpgi11404 2 29195601 to 29195782 181 CpG island CpG island 11404
Cpgi11405 2 29227539 to 29228112 573 CpG island CpG island 11405
6530402F18Rik 2 29245116 to 29252993 7877 - lncRNA gene RIKEN cDNA 6530402F18 gene
Cpgi11406 2 29250324 to 29250526 202 CpG island CpG island 11406
Cpgi11407 2 29251035 to 29253664 2629 CpG island CpG island 11407
Tssr23310 2 29251427 to 29251442 15 - TSS region transcription start site region 23310
Tssr23311 2 29251683 to 29251696 13 - TSS region transcription start site region 23311
Tssr23312 2 29252059 to 29252062 3 - TSS region transcription start site region 23312
Tssr23313 2 29252360 to 29252371 11 - TSS region transcription start site region 23313
Tssr23314 2 29252811 to 29252826 15 - TSS region transcription start site region 23314
Tssr23315 2 29252827 to 29252832 5 - TSS region transcription start site region 23315
Tssr23316 2 29252837 to 29252852 15 - TSS region transcription start site region 23316
Tssr23317 2 29252868 to 29252893 25 - TSS region transcription start site region 23317
Tssr23318 2 29252922 to 29252949 27 - TSS region transcription start site region 23318
Tssr23319 2 29252962 to 29252997 35 - TSS region transcription start site region 23319
Tssr23320 2 29253001 to 29253013 12 - TSS region transcription start site region 23320
Tssr23321 2 29253426 to 29253491 65 - TSS region transcription start site region 23321
Cpgi11408 2 29346623 to 29347352 729 CpG island CpG island 11408
Tssr17001 2 29346803 to 29346842 39 + TSS region transcription start site region 17001
Med27 2 29346819 to 29524793 177974 + protein coding gene mediator complex subunit 27
Gm13402 2 29349842 to 29396459 46617 - antisense lncRNA gene predicted gene 13402
Tssr17002 2 29362921 to 29362924 3 + TSS region transcription start site region 17002
D2Mit153 2 29414846 to 29414972 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 153
D2Mit295 2 29417935 to 29418043 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 295
D2Mit217 2 29439339 to 29439466 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 217
Tssr17003 2 29457366 to 29457370 4 + TSS region transcription start site region 17003
Gm24976 2 29459194 to 29459328 134 + rRNA gene predicted gene, 24976
Mir133c 2 29475215 to 29475294 79 - miRNA gene microRNA 133c
Gm13401 2 29498212 to 29498502 290 + pseudogene predicted gene 13401
Gm30761 2 29542637 to 29546756 4119 - lncRNA gene predicted gene, 30761
Cpgi11409 2 29619189 to 29620552 1363 CpG island CpG island 11409
Tssr17004 2 29619692 to 29619825 133 + TSS region transcription start site region 17004
Rapgef1 2 29619720 to 29740364 120644 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 1
Tssr23322 2 29620527 to 29620546 19 - TSS region transcription start site region 23322
Tssr23323 2 29621190 to 29621199 9 - TSS region transcription start site region 23323
Tssr23324 2 29621210 to 29621255 45 - TSS region transcription start site region 23324
Tssr17005 2 29621436 to 29621460 24 + TSS region transcription start site region 17005
Tssr23325 2 29623552 to 29623583 31 - TSS region transcription start site region 23325
Tssr23326 2 29624804 to 29624810 6 - TSS region transcription start site region 23326
Tssr17006 2 29625060 to 29625072 12 + TSS region transcription start site region 17006
Tssr17007 2 29629755 to 29629764 9 + TSS region transcription start site region 17007
Tssr17008 2 29643665 to 29643681 16 + TSS region transcription start site region 17008
Tssr17009 2 29643698 to 29643712 14 + TSS region transcription start site region 17009
Tssr17010 2 29643738 to 29643757 19 + TSS region transcription start site region 17010
Tssr17011 2 29643763 to 29643782 19 + TSS region transcription start site region 17011
Tssr17012 2 29643788 to 29643805 17 + TSS region transcription start site region 17012
T2dm2sa 2 148533014 to 29417935 -119115079 QTL type 2 diabetes mellitus 2 in SMXA RI mice