Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:29084809-31619337

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568 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttf1 2 29060262 to 29087656 27394 + protein coding gene transcription termination factor, RNA polymerase I
Gm13393 2 29088666 to 29094501 5835 + lincRNA gene predicted gene 13393
Gm13396 2 29093835 to 29094105 270 - pseudogene predicted gene 13396
Tssr16980 2 29097717 to 29097722 5 + TSS region transcription start site region 16980
Tssr23302 2 29099651 to 29099677 26 - TSS region transcription start site region 23302
Tssr16981 2 29099878 to 29099890 12 + TSS region transcription start site region 16981
Tssr16982 2 29099901 to 29099918 17 + TSS region transcription start site region 16982
Tssr23303 2 29100887 to 29100924 37 - TSS region transcription start site region 23303
Tssr23304 2 29121104 to 29121108 4 - TSS region transcription start site region 23304
Tssr16983 2 29122602 to 29122613 11 + TSS region transcription start site region 16983
Tssr16984 2 29122626 to 29122668 42 + TSS region transcription start site region 16984
Tssr16985 2 29122713 to 29122739 26 + TSS region transcription start site region 16985
Tssr16986 2 29122755 to 29122764 9 + TSS region transcription start site region 16986
Tssr16987 2 29122784 to 29122789 5 + TSS region transcription start site region 16987
Tssr16988 2 29122805 to 29122811 6 + TSS region transcription start site region 16988
Tssr16989 2 29124106 to 29124166 60 + TSS region transcription start site region 16989
Setx 2 29124181 to 29182471 58290 + protein coding gene senataxin
Cpgi11402 2 29124643 to 29125807 1164 CpG island CpG island 11402
Tssr23305 2 29124810 to 29124831 21 - TSS region transcription start site region 23305
Tssr16990 2 29124972 to 29125048 76 + TSS region transcription start site region 16990
Tssr16991 2 29125143 to 29125178 35 + TSS region transcription start site region 16991
Tssr16992 2 29125201 to 29125212 11 + TSS region transcription start site region 16992
Tssr16993 2 29125216 to 29125238 22 + TSS region transcription start site region 16993
Tssr16994 2 29125243 to 29125254 11 + TSS region transcription start site region 16994
Tssr16995 2 29125316 to 29125327 11 + TSS region transcription start site region 16995
Tssr16996 2 29125339 to 29125384 45 + TSS region transcription start site region 16996
Tssr23306 2 29159755 to 29159756 1 - TSS region transcription start site region 23306
Tssr16997 2 29159915 to 29159919 4 + TSS region transcription start site region 16997
Tssr16998 2 29181163 to 29181196 33 + TSS region transcription start site region 16998
Tssr447 2 29189176 to 29189185 9 + TSS region transcription start site region 447
Tssr23307 2 29191509 to 29191551 42 - TSS region transcription start site region 23307
Tssr16999 2 29191631 to 29191644 13 + TSS region transcription start site region 16999
Tssr17000 2 29191645 to 29191654 9 + TSS region transcription start site region 17000
Tssr23308 2 29194196 to 29194197 1 - TSS region transcription start site region 23308
Cpgi11403 2 29194602 to 29195359 757 CpG island CpG island 11403
Tssr448 2 29194605 to 29194627 22 - TSS region transcription start site region 448
Tssr23309 2 29194651 to 29194671 20 - TSS region transcription start site region 23309
Ntng2 2 29194726 to 29248099 53373 - protein coding gene netrin G2
Cpgi11404 2 29195601 to 29195782 181 CpG island CpG island 11404
Cpgi11405 2 29227539 to 29228112 573 CpG island CpG island 11405
6530402F18Rik 2 29245116 to 29252993 7877 - lncRNA gene RIKEN cDNA 6530402F18 gene
Cpgi11406 2 29250324 to 29250526 202 CpG island CpG island 11406
Cpgi11407 2 29251035 to 29253664 2629 CpG island CpG island 11407
Tssr23310 2 29251427 to 29251442 15 - TSS region transcription start site region 23310
Tssr23311 2 29251683 to 29251696 13 - TSS region transcription start site region 23311
Tssr23312 2 29252059 to 29252062 3 - TSS region transcription start site region 23312
Tssr23313 2 29252360 to 29252371 11 - TSS region transcription start site region 23313
Tssr23314 2 29252811 to 29252826 15 - TSS region transcription start site region 23314
Tssr23315 2 29252827 to 29252832 5 - TSS region transcription start site region 23315
Tssr23316 2 29252837 to 29252852 15 - TSS region transcription start site region 23316
Tssr23317 2 29252868 to 29252893 25 - TSS region transcription start site region 23317
Tssr23318 2 29252922 to 29252949 27 - TSS region transcription start site region 23318
Tssr23319 2 29252962 to 29252997 35 - TSS region transcription start site region 23319
Tssr23320 2 29253001 to 29253013 12 - TSS region transcription start site region 23320
Tssr23321 2 29253426 to 29253491 65 - TSS region transcription start site region 23321
Cpgi11408 2 29346623 to 29347352 729 CpG island CpG island 11408
Tssr17001 2 29346803 to 29346842 39 + TSS region transcription start site region 17001
Med27 2 29346819 to 29524793 177974 + protein coding gene mediator complex subunit 27
Gm13402 2 29349842 to 29396459 46617 - antisense lncRNA gene predicted gene 13402
Tssr17002 2 29362921 to 29362924 3 + TSS region transcription start site region 17002
D2Mit153 2 29414846 to 29414972 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 153
D2Mit295 2 29417935 to 29418043 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 295
D2Mit217 2 29439339 to 29439466 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 217
Tssr17003 2 29457366 to 29457370 4 + TSS region transcription start site region 17003
Gm24976 2 29459194 to 29459328 134 + rRNA gene predicted gene, 24976
Mir133c 2 29475215 to 29475294 79 - miRNA gene microRNA 133c
Gm13401 2 29498212 to 29498502 290 + pseudogene predicted gene 13401
Gm30761 2 29542637 to 29546756 4119 - lncRNA gene predicted gene, 30761
Cpgi11409 2 29619189 to 29620552 1363 CpG island CpG island 11409
Tssr17004 2 29619692 to 29619825 133 + TSS region transcription start site region 17004
Rapgef1 2 29619720 to 29740364 120644 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 1
Tssr23322 2 29620527 to 29620546 19 - TSS region transcription start site region 23322
Tssr23323 2 29621190 to 29621199 9 - TSS region transcription start site region 23323
Tssr23324 2 29621210 to 29621255 45 - TSS region transcription start site region 23324
Tssr17005 2 29621436 to 29621460 24 + TSS region transcription start site region 17005
Tssr23325 2 29623552 to 29623583 31 - TSS region transcription start site region 23325
Tssr23326 2 29624804 to 29624810 6 - TSS region transcription start site region 23326
Tssr17006 2 29625060 to 29625072 12 + TSS region transcription start site region 17006
Tssr17007 2 29629755 to 29629764 9 + TSS region transcription start site region 17007
Tssr17008 2 29643665 to 29643681 16 + TSS region transcription start site region 17008
Tssr17009 2 29643698 to 29643712 14 + TSS region transcription start site region 17009
Tssr17010 2 29643738 to 29643757 19 + TSS region transcription start site region 17010
Tssr17011 2 29643763 to 29643782 19 + TSS region transcription start site region 17011
Tssr17012 2 29643788 to 29643805 17 + TSS region transcription start site region 17012
Tssr17013 2 29699787 to 29699808 21 + TSS region transcription start site region 17013
Tssr17014 2 29724027 to 29724029 2 + TSS region transcription start site region 17014
Gm9823 2 29738335 to 29738665 330 - pseudogene predicted gene 9823
Tssr23327 2 29744645 to 29744649 4 - TSS region transcription start site region 23327
Gm13420 2 29744919 to 29751685 6766 - protein coding gene predicted gene 13420
Cpgi11410 2 29747064 to 29747760 696 CpG island CpG island 11410
Cpgi11411 2 29751131 to 29751919 788 CpG island CpG island 11411
Tssr23328 2 29751635 to 29751669 34 - TSS region transcription start site region 23328
Trub2 2 29761223 to 29787708 26485 - protein coding gene TruB pseudouridine (psi) synthase family member 2
Gm13547 2 29761528 to 29764089 2561 + protein coding gene predicted gene 13547
Tssr17015 2 29761555 to 29761567 12 + TSS region transcription start site region 17015
Tssr17016 2 29761606 to 29761611 5 + TSS region transcription start site region 17016
Tssr23329 2 29772163 to 29772172 9 - TSS region transcription start site region 23329
Tssr23330 2 29772191 to 29772196 5 - TSS region transcription start site region 23330
Tssr449 2 29772200 to 29772204 4 - TSS region transcription start site region 449
Tssr23331 2 29772222 to 29772233 11 - TSS region transcription start site region 23331
Tssr23332 2 29772253 to 29772264 11 - TSS region transcription start site region 23332
Tssr450 2 29772549 to 29772556 7 + TSS region transcription start site region 450
Tssr17017 2 29772595 to 29772611 16 + TSS region transcription start site region 17017
Tssr23333 2 29773507 to 29773517 10 - TSS region transcription start site region 23333
Tssr23334 2 29787250 to 29787254 4 - TSS region transcription start site region 23334
Cpgi11412 2 29787377 to 29787673 296 CpG island CpG island 11412
Tssr17018 2 29787482 to 29787511 29 + TSS region transcription start site region 17018
Tssr23335 2 29787628 to 29787680 52 - TSS region transcription start site region 23335
Tssr451 2 29788120 to 29788140 20 - TSS region transcription start site region 451
Cpgi11413 2 29788154 to 29788675 521 CpG island CpG island 11413
Coq4 2 29788187 to 29797743 9556 + protein coding gene coenzyme Q4
Tssr17019 2 29788237 to 29788302 65 + TSS region transcription start site region 17019
Tssr17020 2 29788308 to 29788320 12 + TSS region transcription start site region 17020
Tssr17021 2 29788321 to 29788335 14 + TSS region transcription start site region 17021
Cpgi11414 2 29802447 to 29803301 854 CpG island CpG island 11414
Tssr17022 2 29802626 to 29802647 21 + TSS region transcription start site region 17022
Tssr17023 2 29802655 to 29802693 38 + TSS region transcription start site region 17023
Slc27a4 2 29802680 to 29817522 14842 + protein coding gene solute carrier family 27 (fatty acid transporter), member 4
Tssr17024 2 29802697 to 29802720 23 + TSS region transcription start site region 17024
Tssr17025 2 29802731 to 29802745 14 + TSS region transcription start site region 17025
Tssr17026 2 29802806 to 29802819 13 + TSS region transcription start site region 17026
Tssr17027 2 29802833 to 29802855 22 + TSS region transcription start site region 17027
Tssr17028 2 29803618 to 29803634 16 + TSS region transcription start site region 17028
Tssr17029 2 29803650 to 29803660 10 + TSS region transcription start site region 17029
Tssr23336 2 29827026 to 29827044 18 - TSS region transcription start site region 23336
Cpgi11415 2 29827219 to 29827907 688 CpG island CpG island 11415
Tssr17030 2 29827368 to 29827403 35 + TSS region transcription start site region 17030
Urm1 2 29827389 to 29844996 17607 + protein coding gene ubiquitin related modifier 1
Cpgi11416 2 29845351 to 29846628 1277 CpG island CpG island 11416
Mir219a-2 2 29845631 to 29845727 96 - miRNA gene microRNA 219a-2
Tssr23337 2 29845641 to 29845645 4 - TSS region transcription start site region 23337
Mir219b 2 29845647 to 29845711 64 + miRNA gene microRNA 219b
Tssr23338 2 29846302 to 29846316 14 - TSS region transcription start site region 23338
Tssr23339 2 29846476 to 29846494 18 - TSS region transcription start site region 23339
Tssr17031 2 29858247 to 29858268 21 + TSS region transcription start site region 17031
2600006K01Rik 2 29868723 to 29870317 1594 - antisense lncRNA gene RIKEN cDNA 2600006K01 gene
Cpgi11417 2 29868951 to 29869727 776 CpG island CpG island 11417
Cercam 2 29869164 to 29882840 13676 + protein coding gene cerebral endothelial cell adhesion molecule
Tssr17032 2 29869484 to 29869535 51 + TSS region transcription start site region 17032
Tssr23340 2 29870188 to 29870223 35 - TSS region transcription start site region 23340
Tssr17033 2 29881983 to 29881994 11 + TSS region transcription start site region 17033
Cpgi11418 2 29888988 to 29890932 1944 CpG island CpG island 11418
Tssr17034 2 29889199 to 29889206 7 + TSS region transcription start site region 17034
Tssr17035 2 29889217 to 29889243 26 + TSS region transcription start site region 17035
Odf2 2 29889221 to 29931746 42525 + protein coding gene outer dense fiber of sperm tails 2
Tssr452 2 29889709 to 29889716 7 + TSS region transcription start site region 452
Tssr17036 2 29889742 to 29889753 11 + TSS region transcription start site region 17036
Tssr17037 2 29889802 to 29889836 34 + TSS region transcription start site region 17037
Tssr453 2 29889988 to 29889993 5 + TSS region transcription start site region 453
Tssr454 2 29890005 to 29890016 11 + TSS region transcription start site region 454
Tssr455 2 29890038 to 29890045 7 + TSS region transcription start site region 455
Tssr17038 2 29890066 to 29890081 15 + TSS region transcription start site region 17038
Tssr17039 2 29890096 to 29890107 11 + TSS region transcription start site region 17039
Tssr456 2 29890110 to 29890114 4 + TSS region transcription start site region 456
Tssr23341 2 29890334 to 29890370 36 - TSS region transcription start site region 23341
Tssr17040 2 29890446 to 29890511 65 + TSS region transcription start site region 17040
Tssr17041 2 29890520 to 29890531 11 + TSS region transcription start site region 17041
Tssr17042 2 29890534 to 29890545 11 + TSS region transcription start site region 17042
Tssr17043 2 29890555 to 29890556 1 + TSS region transcription start site region 17043
Tssr17044 2 29890698 to 29890710 12 + TSS region transcription start site region 17044
Tssr17045 2 29890861 to 29890868 7 + TSS region transcription start site region 17045
Tssr17046 2 29891985 to 29892007 22 + TSS region transcription start site region 17046
Tssr17047 2 29893054 to 29893073 19 + TSS region transcription start site region 17047
Tssr457 2 29903308 to 29903319 11 + TSS region transcription start site region 457
Tssr17048 2 29903542 to 29903557 15 + TSS region transcription start site region 17048
Tssr17049 2 29903568 to 29903596 28 + TSS region transcription start site region 17049
Tssr17050 2 29914445 to 29914449 4 + TSS region transcription start site region 17050
Tssr23342 2 29914832 to 29914846 14 - TSS region transcription start site region 23342
Tssr17051 2 29920768 to 29920797 29 + TSS region transcription start site region 17051
Gm23865 2 29931427 to 29931523 96 - snRNA gene predicted gene, 23865
Cpgi11419 2 29935167 to 29935964 797 CpG island CpG island 11419
Gle1 2 29935409 to 29959432 24023 + protein coding gene GLE1 RNA export mediator (yeast)
Tssr17052 2 29935413 to 29935499 86 + TSS region transcription start site region 17052
Gm39779 2 29962174 to 29965035 2861 + lncRNA gene predicted gene, 39779
Tssr17053 2 29963424 to 29963428 4 + TSS region transcription start site region 17053
Cpgi11420 2 29965165 to 29966224 1059 CpG island CpG island 11420
Tssr17054 2 29965315 to 29965328 13 + TSS region transcription start site region 17054
Sptan1 2 29965560 to 30031451 65891 + protein coding gene spectrin alpha, non-erythrocytic 1
Tssr17055 2 29965669 to 29965688 19 + TSS region transcription start site region 17055
Tssr17056 2 29966058 to 29966070 12 + TSS region transcription start site region 17056
Tssr17057 2 29966365 to 29966389 24 + TSS region transcription start site region 17057
Tssr17058 2 29984119 to 29984123 4 + TSS region transcription start site region 17058
Mir6997 2 29995950 to 29996020 70 + miRNA gene microRNA 6997
Tssr17059 2 29999997 to 30000012 15 + TSS region transcription start site region 17059
Tssr17060 2 30018863 to 30018867 4 + TSS region transcription start site region 17060
Tssr17061 2 30021058 to 30021062 4 + TSS region transcription start site region 17061
Wdr34 2 30031551 to 30048879 17328 - protein coding gene WD repeat domain 34
Cpgi11421 2 30048209 to 30049298 1089 CpG island CpG island 11421
Tssr23343 2 30048827 to 30048891 64 - TSS region transcription start site region 23343
2410198J08Rik 2 30048961 to 30049377 416 unclassified gene RIKEN cDNA 2410198J08 gene
Tssr17062 2 30061806 to 30061815 9 + TSS region transcription start site region 17062
Cpgi11422 2 30061816 to 30063260 1444 CpG island CpG island 11422
Tssr17063 2 30061838 to 30061841 3 + TSS region transcription start site region 17063
Tssr17064 2 30061847 to 30061859 12 + TSS region transcription start site region 17064
Tssr17065 2 30061861 to 30061864 3 + TSS region transcription start site region 17065
Tssr17066 2 30061882 to 30061891 9 + TSS region transcription start site region 17066
Tssr17067 2 30061905 to 30061912 7 + TSS region transcription start site region 17067
Tssr17068 2 30061920 to 30061929 9 + TSS region transcription start site region 17068
Tssr17069 2 30061949 to 30061965 16 + TSS region transcription start site region 17069
Set 2 30061996 to 30072577 10581 + protein coding gene SET nuclear oncogene