Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:28991104-29251108

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfap77 2 28927749 to 29055274 127525 - protein coding gene cilia and flagella associated protein 77
D2Mit83 2 29005734 to 29005846 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 83
Cpgi11399 2 29029927 to 29030141 214 CpG island CpG island 11399
Cpgi11400 2 29054356 to 29055313 957 CpG island CpG island 11400
Tssr23301 2 29055051 to 29055079 28 - TSS region transcription start site region 23301
Cpgi11401 2 29060009 to 29060897 888 CpG island CpG island 11401
Tssr16979 2 29060239 to 29060287 48 + TSS region transcription start site region 16979
Ttf1 2 29060262 to 29087656 27394 + protein coding gene transcription termination factor, RNA polymerase I
Gm13393 2 29088666 to 29094501 5835 + lincRNA gene predicted gene 13393
Gm13396 2 29093835 to 29094105 270 - pseudogene predicted gene 13396
Tssr16980 2 29097717 to 29097722 5 + TSS region transcription start site region 16980
Tssr23302 2 29099651 to 29099677 26 - TSS region transcription start site region 23302
Tssr16981 2 29099878 to 29099890 12 + TSS region transcription start site region 16981
Tssr16982 2 29099901 to 29099918 17 + TSS region transcription start site region 16982
Tssr23303 2 29100887 to 29100924 37 - TSS region transcription start site region 23303
Tssr23304 2 29121104 to 29121108 4 - TSS region transcription start site region 23304
Tssr16983 2 29122602 to 29122613 11 + TSS region transcription start site region 16983
Tssr16984 2 29122626 to 29122668 42 + TSS region transcription start site region 16984
Tssr16985 2 29122713 to 29122739 26 + TSS region transcription start site region 16985
Tssr16986 2 29122755 to 29122764 9 + TSS region transcription start site region 16986
Tssr16987 2 29122784 to 29122789 5 + TSS region transcription start site region 16987
Tssr16988 2 29122805 to 29122811 6 + TSS region transcription start site region 16988
Tssr16989 2 29124106 to 29124166 60 + TSS region transcription start site region 16989
Setx 2 29124181 to 29182471 58290 + protein coding gene senataxin
Cpgi11402 2 29124643 to 29125807 1164 CpG island CpG island 11402
Tssr23305 2 29124810 to 29124831 21 - TSS region transcription start site region 23305
Tssr16990 2 29124972 to 29125048 76 + TSS region transcription start site region 16990
Tssr16991 2 29125143 to 29125178 35 + TSS region transcription start site region 16991
Tssr16992 2 29125201 to 29125212 11 + TSS region transcription start site region 16992
Tssr16993 2 29125216 to 29125238 22 + TSS region transcription start site region 16993
Tssr16994 2 29125243 to 29125254 11 + TSS region transcription start site region 16994
Tssr16995 2 29125316 to 29125327 11 + TSS region transcription start site region 16995
Tssr16996 2 29125339 to 29125384 45 + TSS region transcription start site region 16996
Tssr23306 2 29159755 to 29159756 1 - TSS region transcription start site region 23306
Tssr16997 2 29159915 to 29159919 4 + TSS region transcription start site region 16997
Tssr16998 2 29181163 to 29181196 33 + TSS region transcription start site region 16998
Tssr447 2 29189176 to 29189185 9 + TSS region transcription start site region 447
Tssr23307 2 29191509 to 29191551 42 - TSS region transcription start site region 23307
Tssr16999 2 29191631 to 29191644 13 + TSS region transcription start site region 16999
Tssr17000 2 29191645 to 29191654 9 + TSS region transcription start site region 17000
Tssr23308 2 29194196 to 29194197 1 - TSS region transcription start site region 23308
Cpgi11403 2 29194602 to 29195359 757 CpG island CpG island 11403
Tssr448 2 29194605 to 29194627 22 - TSS region transcription start site region 448
Tssr23309 2 29194651 to 29194671 20 - TSS region transcription start site region 23309
Ntng2 2 29194726 to 29248099 53373 - protein coding gene netrin G2
Cpgi11404 2 29195601 to 29195782 181 CpG island CpG island 11404
Cpgi11405 2 29227539 to 29228112 573 CpG island CpG island 11405
6530402F18Rik 2 29245116 to 29252993 7877 - lncRNA gene RIKEN cDNA 6530402F18 gene
Cpgi11406 2 29250324 to 29250526 202 CpG island CpG island 11406
Cpgi11407 2 29251035 to 29253664 2629 CpG island CpG island 11407