Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:28574609-29106030

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13381 2 28562197 to 28576698 14501 + antisense lncRNA gene predicted gene 13381
Gtf3c5 2 28566245 to 28583279 17034 - protein coding gene general transcription factor IIIC, polypeptide 5
Cpgi11389 2 28582563 to 28583377 814 CpG island CpG island 11389
Tssr23279 2 28582716 to 28582724 8 - TSS region transcription start site region 23279
Tssr23280 2 28582977 to 28582996 19 - TSS region transcription start site region 23280
Tssr23281 2 28583011 to 28583020 9 - TSS region transcription start site region 23281
Tssr23282 2 28583147 to 28583174 27 - TSS region transcription start site region 23282
Tssr23283 2 28583195 to 28583230 35 - TSS region transcription start site region 23283
Tssr23284 2 28583239 to 28583274 35 - TSS region transcription start site region 23284
Gm22675 2 28595127 to 28595230 103 + snRNA gene predicted gene, 22675
Gm22824 2 28608195 to 28608286 91 + miRNA gene predicted gene, 22824
Gfi1b 2 28609450 to 28621982 12532 - protein coding gene growth factor independent 1B
Tssr23285 2 28613368 to 28613371 3 - TSS region transcription start site region 23285
Tssr23286 2 28615335 to 28615346 11 - TSS region transcription start site region 23286
Tssr23287 2 28620673 to 28620676 3 - TSS region transcription start site region 23287
Tssr23288 2 28621318 to 28621330 12 - TSS region transcription start site region 23288
Tssr23289 2 28621902 to 28621913 11 - TSS region transcription start site region 23289
Tssr23290 2 28621932 to 28621963 31 - TSS region transcription start site region 23290
Cpgi11390 2 28640808 to 28642083 1275 CpG island CpG island 11390
Tssr16966 2 28641227 to 28641262 35 + TSS region transcription start site region 16966
Tsc1 2 28641228 to 28691167 49939 + protein coding gene tuberous sclerosis 1
Tssr16967 2 28641346 to 28641358 12 + TSS region transcription start site region 16967
Spaca9 2 28692080 to 28699651 7571 - protein coding gene sperm acrosome associated 9
Tssr16968 2 28698852 to 28698863 11 + TSS region transcription start site region 16968
Cpgi11391 2 28699533 to 28700376 843 CpG island CpG island 11391
Tssr23291 2 28699636 to 28699659 23 - TSS region transcription start site region 23291
Tssr23292 2 28699661 to 28699688 27 - TSS region transcription start site region 23292
Tssr23293 2 28699728 to 28699739 11 - TSS region transcription start site region 23293
Tssr16969 2 28699787 to 28699818 31 + TSS region transcription start site region 16969
Tssr16970 2 28700151 to 28700154 3 + TSS region transcription start site region 16970
Tssr16971 2 28700155 to 28700187 32 + TSS region transcription start site region 16971
Ak8 2 28700164 to 28813165 113001 + protein coding gene adenylate kinase 8
Tssr16972 2 28702667 to 28702698 31 + TSS region transcription start site region 16972
Mir3088 2 28733278 to 28733351 73 + miRNA gene microRNA 3088
Gm13385 2 28793350 to 28793569 219 - pseudogene predicted gene 13385
Gm13386 2 28807708 to 28807831 123 - pseudogene predicted gene 13386
Gtf3c4 2 28822299 to 28840360 18061 - protein coding gene general transcription factor IIIC, polypeptide 4
Cpgi11392 2 28839609 to 28841030 1421 CpG island CpG island 11392
Tssr23294 2 28840258 to 28840269 11 - TSS region transcription start site region 23294
Tssr23295 2 28840274 to 28840358 84 - TSS region transcription start site region 23295
Tssr16973 2 28840406 to 28840462 56 + TSS region transcription start site region 16973
Ddx31 2 28840406 to 28905571 65165 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
Tssr16974 2 28840471 to 28840482 11 + TSS region transcription start site region 16974
Tssr16975 2 28840604 to 28840653 49 + TSS region transcription start site region 16975
Tssr16976 2 28840682 to 28840752 70 + TSS region transcription start site region 16976
Tssr16977 2 28840765 to 28840778 13 + TSS region transcription start site region 16977
Tssr16978 2 28898795 to 28898800 5 + TSS region transcription start site region 16978
Barhl1 2 28907679 to 28916668 8989 - protein coding gene BarH like homeobox 1
Cpgi11393 2 28908377 to 28908974 597 CpG island CpG island 11393
Cpgi11394 2 28908999 to 28910019 1020 CpG island CpG island 11394
Cpgi11395 2 28911178 to 28912297 1119 CpG island CpG island 11395
Tssr23296 2 28915536 to 28915572 36 - TSS region transcription start site region 23296
Cpgi11396 2 28915606 to 28916556 950 CpG island CpG island 11396
Tssr23297 2 28915832 to 28915846 14 - TSS region transcription start site region 23297
Tssr23298 2 28915860 to 28915893 33 - TSS region transcription start site region 23298
Tssr23299 2 28916627 to 28916635 8 - TSS region transcription start site region 23299
Cpgi11397 2 28917167 to 28918409 1242 CpG island CpG island 11397
Tssr23300 2 28917984 to 28918007 23 - TSS region transcription start site region 23300
Cfap77 2 28927749 to 29055274 127525 - protein coding gene cilia and flagella associated protein 77
Gm13394 2 28933610 to 28934609 999 - pseudogene predicted gene 13394
Cpgi11398 2 28943985 to 28944271 286 CpG island CpG island 11398
D2Mit83 2 29005734 to 29005846 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 83
Cpgi11399 2 29029927 to 29030141 214 CpG island CpG island 11399
Cpgi11400 2 29054356 to 29055313 957 CpG island CpG island 11400
Tssr23301 2 29055051 to 29055079 28 - TSS region transcription start site region 23301
Cpgi11401 2 29060009 to 29060897 888 CpG island CpG island 11401
Tssr16979 2 29060239 to 29060287 48 + TSS region transcription start site region 16979
Ttf1 2 29060262 to 29087656 27394 + protein coding gene transcription termination factor, RNA polymerase I
Gm13393 2 29088666 to 29094501 5835 + lincRNA gene predicted gene 13393
Gm13396 2 29093835 to 29094105 270 - pseudogene predicted gene 13396
Tssr16980 2 29097717 to 29097722 5 + TSS region transcription start site region 16980
Tssr23302 2 29099651 to 29099677 26 - TSS region transcription start site region 23302
Tssr16981 2 29099878 to 29099890 12 + TSS region transcription start site region 16981
Tssr16982 2 29099901 to 29099918 17 + TSS region transcription start site region 16982
Tssr23303 2 29100887 to 29100924 37 - TSS region transcription start site region 23303