Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:28280406-29400462

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carcdq3 2 28289138 to 3233903 -25055235 QTL cardiac collagen deposition QTL 3
Gm13373 2 28315016 to 28324050 9034 - lincRNA gene predicted gene 13373
Tssr23235 2 28325473 to 28325481 8 - TSS region transcription start site region 23235
Tssr16925 2 28382324 to 28382330 6 + TSS region transcription start site region 16925
Cpgi11385 2 28446167 to 28447590 1423 CpG island CpG island 11385
Ppp1r26 2 28446800 to 28455508 8708 + protein coding gene protein phosphatase 1, regulatory subunit 26
Tssr16926 2 28446831 to 28446878 47 + TSS region transcription start site region 16926
Tssr16927 2 28446959 to 28446992 33 + TSS region transcription start site region 16927
1700007K13Rik 2 28462001 to 28466324 4323 - protein coding gene RIKEN cDNA 1700007K13 gene
Tssr23236 2 28466266 to 28466359 93 - TSS region transcription start site region 23236
Tssr23237 2 28466397 to 28466421 24 - TSS region transcription start site region 23237
Cpgi11386 2 28467823 to 28468566 743 CpG island CpG island 11386
Tssr16928 2 28468056 to 28468094 38 + TSS region transcription start site region 16928
Mrps2 2 28468066 to 28471178 3112 + protein coding gene mitochondrial ribosomal protein S2
Tssr16929 2 28469607 to 28469620 13 + TSS region transcription start site region 16929
Tssr16930 2 28469780 to 28469791 11 + TSS region transcription start site region 16930
Tssr16931 2 28469835 to 28469853 18 + TSS region transcription start site region 16931
Tssr16932 2 28477083 to 28477093 10 + TSS region transcription start site region 16932
Rpsa-ps9 2 28477166 to 28478050 884 + pseudogene ribosomal protein SA, pseudogene 9
Tssr16933 2 28479372 to 28479397 25 + TSS region transcription start site region 16933
Tssr16934 2 28480174 to 28480185 11 + TSS region transcription start site region 16934
Tssr16935 2 28496883 to 28496893 10 + TSS region transcription start site region 16935
Gbgt1 2 28496891 to 28505415 8524 + protein coding gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
Tssr16936 2 28496915 to 28496963 48 + TSS region transcription start site region 16936
Gm10134 2 28506095 to 28506475 380 + protein coding gene predicted gene 10134
Tssr16937 2 28506945 to 28506977 32 + TSS region transcription start site region 16937
Cpgi11387 2 28512512 to 28514113 1601 CpG island CpG island 11387
Tssr16938 2 28513078 to 28513104 26 + TSS region transcription start site region 16938
Tssr16939 2 28513105 to 28513126 21 + TSS region transcription start site region 16939
Ralgds 2 28513125 to 28553081 39956 + protein coding gene ral guanine nucleotide dissociation stimulator
Tssr16940 2 28513128 to 28513149 21 + TSS region transcription start site region 16940
Tssr16941 2 28513243 to 28513323 80 + TSS region transcription start site region 16941
Tssr16942 2 28513360 to 28513366 6 + TSS region transcription start site region 16942
Tssr16943 2 28517482 to 28517484 2 + TSS region transcription start site region 16943
Tssr16944 2 28523985 to 28523995 10 + TSS region transcription start site region 16944
Tssr23238 2 28524511 to 28524526 15 - TSS region transcription start site region 23238
Tssr16945 2 28527788 to 28527804 16 + TSS region transcription start site region 16945
Cpgi11388 2 28533045 to 28533994 949 CpG island CpG island 11388
Tssr23239 2 28533108 to 28533119 11 - TSS region transcription start site region 23239
Tssr16946 2 28533423 to 28533482 59 + TSS region transcription start site region 16946
Tssr16947 2 28534343 to 28534354 11 + TSS region transcription start site region 16947
Tssr23240 2 28537522 to 28537528 6 - TSS region transcription start site region 23240
Tssr23241 2 28539702 to 28539720 18 - TSS region transcription start site region 23241
Tssr23242 2 28539759 to 28539771 12 - TSS region transcription start site region 23242
Tssr16948 2 28540227 to 28540238 11 + TSS region transcription start site region 16948
Tssr16949 2 28540255 to 28540298 43 + TSS region transcription start site region 16949
Tssr16950 2 28542436 to 28542447 11 + TSS region transcription start site region 16950
Tssr16951 2 28545066 to 28545104 38 + TSS region transcription start site region 16951
Tssr16952 2 28549463 to 28549476 13 + TSS region transcription start site region 16952
Tssr16953 2 28552181 to 28552193 12 + TSS region transcription start site region 16953
Cel 2 28555819 to 28563403 7584 - protein coding gene carboxyl ester lipase
Tssr16954 2 28555856 to 28555863 7 + TSS region transcription start site region 16954
Tssr16955 2 28555878 to 28555909 31 + TSS region transcription start site region 16955
Tssr23243 2 28555882 to 28555885 3 - TSS region transcription start site region 23243
Tssr23244 2 28555890 to 28555895 5 - TSS region transcription start site region 23244
Tssr23245 2 28555923 to 28555940 17 - TSS region transcription start site region 23245
Tssr23246 2 28556078 to 28556086 8 - TSS region transcription start site region 23246
Tssr23247 2 28556112 to 28556121 9 - TSS region transcription start site region 23247
Tssr23248 2 28556174 to 28556195 21 - TSS region transcription start site region 23248
Tssr23249 2 28556287 to 28556298 11 - TSS region transcription start site region 23249
Tssr23250 2 28556320 to 28556370 50 - TSS region transcription start site region 23250
Tssr23251 2 28556746 to 28556758 12 - TSS region transcription start site region 23251
Tssr16956 2 28556751 to 28556760 9 + TSS region transcription start site region 16956
Tssr16957 2 28556778 to 28556824 46 + TSS region transcription start site region 16957
Tssr23252 2 28556827 to 28556871 44 - TSS region transcription start site region 23252
Tssr16958 2 28557603 to 28557627 24 + TSS region transcription start site region 16958
Tssr23253 2 28557645 to 28557689 44 - TSS region transcription start site region 23253
Tssr23254 2 28557731 to 28557776 45 - TSS region transcription start site region 23254
Tssr16959 2 28557779 to 28557797 18 + TSS region transcription start site region 16959
Tssr23255 2 28557795 to 28557822 27 - TSS region transcription start site region 23255
Tssr16960 2 28557920 to 28557932 12 + TSS region transcription start site region 16960
Tssr23256 2 28557967 to 28557992 25 - TSS region transcription start site region 23256
Tssr16961 2 28557976 to 28558017 41 + TSS region transcription start site region 16961
Tssr23257 2 28557997 to 28558022 25 - TSS region transcription start site region 23257
Tssr16962 2 28558020 to 28558053 33 + TSS region transcription start site region 16962
Tssr23258 2 28558029 to 28558054 25 - TSS region transcription start site region 23258
Tssr23259 2 28558057 to 28558072 15 - TSS region transcription start site region 23259
Tssr23260 2 28558074 to 28558082 8 - TSS region transcription start site region 23260
Tssr23261 2 28558085 to 28558123 38 - TSS region transcription start site region 23261
Tssr23262 2 28559356 to 28559395 39 - TSS region transcription start site region 23262
Tssr23263 2 28559396 to 28559437 41 - TSS region transcription start site region 23263
Tssr23264 2 28559602 to 28559639 37 - TSS region transcription start site region 23264
Tssr23265 2 28559673 to 28559681 8 - TSS region transcription start site region 23265
Tssr23266 2 28559853 to 28559862 9 - TSS region transcription start site region 23266
Tssr23267 2 28559879 to 28559892 13 - TSS region transcription start site region 23267
Tssr23268 2 28560521 to 28560575 54 - TSS region transcription start site region 23268
Tssr16963 2 28560554 to 28560599 45 + TSS region transcription start site region 16963
Tssr23269 2 28560587 to 28560607 20 - TSS region transcription start site region 23269
Tssr23270 2 28560658 to 28560679 21 - TSS region transcription start site region 23270
Tssr16964 2 28560948 to 28560963 15 + TSS region transcription start site region 16964
Tssr23271 2 28561180 to 28561192 12 - TSS region transcription start site region 23271
Tssr23272 2 28561204 to 28561227 23 - TSS region transcription start site region 23272
Tssr23273 2 28561234 to 28561243 9 - TSS region transcription start site region 23273
Tssr23274 2 28561264 to 28561277 13 - TSS region transcription start site region 23274
Tssr23275 2 28561328 to 28561340 12 - TSS region transcription start site region 23275
Gm13381 2 28562197 to 28576698 14501 + antisense lncRNA gene predicted gene 13381
Tssr23276 2 28562411 to 28562422 11 - TSS region transcription start site region 23276
Tssr23277 2 28562433 to 28562452 19 - TSS region transcription start site region 23277
Tssr16965 2 28562509 to 28562527 18 + TSS region transcription start site region 16965
Tssr23278 2 28563373 to 28563392 19 - TSS region transcription start site region 23278
Gtf3c5 2 28566245 to 28583279 17034 - protein coding gene general transcription factor IIIC, polypeptide 5
Cpgi11389 2 28582563 to 28583377 814 CpG island CpG island 11389
Tssr23279 2 28582716 to 28582724 8 - TSS region transcription start site region 23279
Tssr23280 2 28582977 to 28582996 19 - TSS region transcription start site region 23280
Tssr23281 2 28583011 to 28583020 9 - TSS region transcription start site region 23281
Tssr23282 2 28583147 to 28583174 27 - TSS region transcription start site region 23282
Tssr23283 2 28583195 to 28583230 35 - TSS region transcription start site region 23283
Tssr23284 2 28583239 to 28583274 35 - TSS region transcription start site region 23284
Gm22675 2 28595127 to 28595230 103 + snRNA gene predicted gene, 22675
Gm22824 2 28608195 to 28608286 91 + miRNA gene predicted gene, 22824
Gfi1b 2 28609450 to 28621982 12532 - protein coding gene growth factor independent 1B
Tssr23285 2 28613368 to 28613371 3 - TSS region transcription start site region 23285
Tssr23286 2 28615335 to 28615346 11 - TSS region transcription start site region 23286
Tssr23287 2 28620673 to 28620676 3 - TSS region transcription start site region 23287
Tssr23288 2 28621318 to 28621330 12 - TSS region transcription start site region 23288
Tssr23289 2 28621902 to 28621913 11 - TSS region transcription start site region 23289
Tssr23290 2 28621932 to 28621963 31 - TSS region transcription start site region 23290
Cpgi11390 2 28640808 to 28642083 1275 CpG island CpG island 11390
Tssr16966 2 28641227 to 28641262 35 + TSS region transcription start site region 16966
Tsc1 2 28641228 to 28691167 49939 + protein coding gene tuberous sclerosis 1
Tssr16967 2 28641346 to 28641358 12 + TSS region transcription start site region 16967
Spaca9 2 28692080 to 28699651 7571 - protein coding gene sperm acrosome associated 9
Tssr16968 2 28698852 to 28698863 11 + TSS region transcription start site region 16968
Cpgi11391 2 28699533 to 28700376 843 CpG island CpG island 11391
Tssr23291 2 28699636 to 28699659 23 - TSS region transcription start site region 23291
Tssr23292 2 28699661 to 28699688 27 - TSS region transcription start site region 23292
Tssr23293 2 28699728 to 28699739 11 - TSS region transcription start site region 23293
Tssr16969 2 28699787 to 28699818 31 + TSS region transcription start site region 16969
Tssr16970 2 28700151 to 28700154 3 + TSS region transcription start site region 16970
Tssr16971 2 28700155 to 28700187 32 + TSS region transcription start site region 16971
Ak8 2 28700164 to 28813165 113001 + protein coding gene adenylate kinase 8
Tssr16972 2 28702667 to 28702698 31 + TSS region transcription start site region 16972
Mir3088 2 28733278 to 28733351 73 + miRNA gene microRNA 3088
Gm13385 2 28793350 to 28793569 219 - pseudogene predicted gene 13385
Gm13386 2 28807708 to 28807831 123 - pseudogene predicted gene 13386
Gtf3c4 2 28822299 to 28840360 18061 - protein coding gene general transcription factor IIIC, polypeptide 4
Cpgi11392 2 28839609 to 28841030 1421 CpG island CpG island 11392
Tssr23294 2 28840258 to 28840269 11 - TSS region transcription start site region 23294
Tssr23295 2 28840274 to 28840358 84 - TSS region transcription start site region 23295
Ddx31 2 28840406 to 28905571 65165 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
Tssr16973 2 28840406 to 28840462 56 + TSS region transcription start site region 16973
Tssr16974 2 28840471 to 28840482 11 + TSS region transcription start site region 16974
Tssr16975 2 28840604 to 28840653 49 + TSS region transcription start site region 16975
Tssr16976 2 28840682 to 28840752 70 + TSS region transcription start site region 16976
Tssr16977 2 28840765 to 28840778 13 + TSS region transcription start site region 16977
Tssr16978 2 28898795 to 28898800 5 + TSS region transcription start site region 16978
Barhl1 2 28907679 to 28916668 8989 - protein coding gene BarH like homeobox 1
Cpgi11393 2 28908377 to 28908974 597 CpG island CpG island 11393
Cpgi11394 2 28908999 to 28910019 1020 CpG island CpG island 11394
Cpgi11395 2 28911178 to 28912297 1119 CpG island CpG island 11395
Tssr23296 2 28915536 to 28915572 36 - TSS region transcription start site region 23296
Cpgi11396 2 28915606 to 28916556 950 CpG island CpG island 11396
Tssr23297 2 28915832 to 28915846 14 - TSS region transcription start site region 23297
Tssr23298 2 28915860 to 28915893 33 - TSS region transcription start site region 23298
Tssr23299 2 28916627 to 28916635 8 - TSS region transcription start site region 23299
Cpgi11397 2 28917167 to 28918409 1242 CpG island CpG island 11397
Tssr23300 2 28917984 to 28918007 23 - TSS region transcription start site region 23300
Cfap77 2 28927749 to 29055274 127525 - protein coding gene cilia and flagella associated protein 77
Gm13394 2 28933610 to 28934609 999 - pseudogene predicted gene 13394
Cpgi11398 2 28943985 to 28944271 286 CpG island CpG island 11398
D2Mit83 2 29005734 to 29005846 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 83
Cpgi11399 2 29029927 to 29030141 214 CpG island CpG island 11399
Cpgi11400 2 29054356 to 29055313 957 CpG island CpG island 11400
Tssr23301 2 29055051 to 29055079 28 - TSS region transcription start site region 23301
Cpgi11401 2 29060009 to 29060897 888 CpG island CpG island 11401
Tssr16979 2 29060239 to 29060287 48 + TSS region transcription start site region 16979
Ttf1 2 29060262 to 29087656 27394 + protein coding gene transcription termination factor, RNA polymerase I
Gm13393 2 29088666 to 29094501 5835 + lincRNA gene predicted gene 13393
Gm13396 2 29093835 to 29094105 270 - pseudogene predicted gene 13396
Tssr16980 2 29097717 to 29097722 5 + TSS region transcription start site region 16980
Tssr23302 2 29099651 to 29099677 26 - TSS region transcription start site region 23302
Tssr16981 2 29099878 to 29099890 12 + TSS region transcription start site region 16981
Tssr16982 2 29099901 to 29099918 17 + TSS region transcription start site region 16982
Tssr23303 2 29100887 to 29100924 37 - TSS region transcription start site region 23303
Tssr23304 2 29121104 to 29121108 4 - TSS region transcription start site region 23304
Tssr16983 2 29122602 to 29122613 11 + TSS region transcription start site region 16983
Tssr16984 2 29122626 to 29122668 42 + TSS region transcription start site region 16984
Tssr16985 2 29122713 to 29122739 26 + TSS region transcription start site region 16985
Tssr16986 2 29122755 to 29122764 9 + TSS region transcription start site region 16986
Tssr16987 2 29122784 to 29122789 5 + TSS region transcription start site region 16987
Tssr16988 2 29122805 to 29122811 6 + TSS region transcription start site region 16988
Tssr16989 2 29124106 to 29124166 60 + TSS region transcription start site region 16989
Setx 2 29124181 to 29182471 58290 + protein coding gene senataxin
Cpgi11402 2 29124643 to 29125807 1164 CpG island CpG island 11402
Tssr23305 2 29124810 to 29124831 21 - TSS region transcription start site region 23305
Tssr16990 2 29124972 to 29125048 76 + TSS region transcription start site region 16990
Tssr16991 2 29125143 to 29125178 35 + TSS region transcription start site region 16991
Tssr16992 2 29125201 to 29125212 11 + TSS region transcription start site region 16992
Tssr16993 2 29125216 to 29125238 22 + TSS region transcription start site region 16993
Tssr16994 2 29125243 to 29125254 11 + TSS region transcription start site region 16994
Tssr16995 2 29125316 to 29125327 11 + TSS region transcription start site region 16995
Tssr16996 2 29125339 to 29125384 45 + TSS region transcription start site region 16996
Tssr23306 2 29159755 to 29159756 1 - TSS region transcription start site region 23306
Tssr16997 2 29159915 to 29159919 4 + TSS region transcription start site region 16997
Tssr16998 2 29181163 to 29181196 33 + TSS region transcription start site region 16998
Tssr447 2 29189176 to 29189185 9 + TSS region transcription start site region 447
Tssr23307 2 29191509 to 29191551 42 - TSS region transcription start site region 23307
Tssr16999 2 29191631 to 29191644 13 + TSS region transcription start site region 16999
Tssr17000 2 29191645 to 29191654 9 + TSS region transcription start site region 17000
Tssr23308 2 29194196 to 29194197 1 - TSS region transcription start site region 23308