Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:27695439-28495444

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rxra 2 27676440 to 27762957 86517 + protein coding gene retinoid X receptor alpha
Tssr16872 2 27709247 to 27709249 2 + TSS region transcription start site region 16872
Tssr16873 2 27710274 to 27710281 7 + TSS region transcription start site region 16873
Tssr16874 2 27710296 to 27710308 12 + TSS region transcription start site region 16874
Capsq1 2 27712048 to 84183040 56470992 QTL capsaicin sensitivity related QTL 1
D2Mit120 2 27712048 to 27712193 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 120
Tssr23233 2 27714231 to 27714239 8 - TSS region transcription start site region 23233
Tssr445 2 27714279 to 27714294 15 - TSS region transcription start site region 445
Tssr16875 2 27714439 to 27714463 24 + TSS region transcription start site region 16875
Tssr16876 2 27714489 to 27714499 10 + TSS region transcription start site region 16876
Tssr16877 2 27728845 to 27728862 17 + TSS region transcription start site region 16877
Tssr16878 2 27736035 to 27736039 4 + TSS region transcription start site region 16878
Tssr16879 2 27744701 to 27744719 18 + TSS region transcription start site region 16879
Tssr16880 2 27761571 to 27761584 13 + TSS region transcription start site region 16880
D2Mit365 2 27806820 to 27806919 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 365
Gm39777 2 27832686 to 27838405 5719 - lncRNA gene predicted gene, 39777
2810430I11Rik 2 27882925 to 27887052 4127 - unclassified gene RIKEN cDNA 2810430I11 gene
Cpgi11381 2 27885894 to 27887479 1585 CpG island CpG island 11381
Tssr16881 2 27886005 to 27886047 42 + TSS region transcription start site region 16881
Tssr16882 2 27886384 to 27886395 11 + TSS region transcription start site region 16882
Tssr16883 2 27886416 to 27886440 24 + TSS region transcription start site region 16883
Col5a1 2 27886425 to 28039514 153089 + protein coding gene collagen, type V, alpha 1
Tssr16884 2 27886444 to 27886461 17 + TSS region transcription start site region 16884
Tssr16885 2 27886479 to 27886493 14 + TSS region transcription start site region 16885
Tssr16886 2 27895291 to 27895302 11 + TSS region transcription start site region 16886
Tssr16887 2 27911889 to 27911892 3 + TSS region transcription start site region 16887
Tssr446 2 27950634 to 27950651 17 + TSS region transcription start site region 446
Tssr16888 2 27951283 to 27951311 28 + TSS region transcription start site region 16888
Tssr16889 2 27951365 to 27951379 14 + TSS region transcription start site region 16889
Tssr16890 2 28001955 to 28001989 34 + TSS region transcription start site region 16890
Gm13372 2 28025417 to 28030437 5020 - unclassified non-coding RNA gene predicted gene 13372
Tssr16891 2 28032055 to 28032073 18 + TSS region transcription start site region 16891
Tssr16892 2 28032087 to 28032098 11 + TSS region transcription start site region 16892
Tssr16893 2 28032770 to 28032793 23 + TSS region transcription start site region 16893
Fcnb 2 28076479 to 28084903 8424 - protein coding gene ficolin B
Tssr16894 2 28076509 to 28076510 1 + TSS region transcription start site region 16894
Tssr23234 2 28084877 to 28084891 14 - TSS region transcription start site region 23234
Gm13371 2 28092032 to 28093514 1482 - lincRNA gene predicted gene 13371
Tssr16895 2 28095439 to 28095444 5 + TSS region transcription start site region 16895
Tssr16896 2 28095448 to 28095486 38 + TSS region transcription start site region 16896
F730016J06Rik 2 28095477 to 28127731 32254 + lincRNA gene RIKEN cDNA F730016J06 gene
Cpgi11382 2 28133734 to 28134004 270 CpG island CpG island 11382
Cpgi11383 2 28192650 to 28193937 1287 CpG island CpG island 11383
Tssr16897 2 28192910 to 28192921 11 + TSS region transcription start site region 16897
Tssr16898 2 28192932 to 28192937 5 + TSS region transcription start site region 16898
Tssr16899 2 28192938 to 28192970 32 + TSS region transcription start site region 16899
Tssr16900 2 28192971 to 28192985 14 + TSS region transcription start site region 16900
Tssr16901 2 28193007 to 28193028 21 + TSS region transcription start site region 16901
Tssr16902 2 28193043 to 28193050 7 + TSS region transcription start site region 16902
Tssr16903 2 28193069 to 28193076 7 + TSS region transcription start site region 16903
Olfm1 2 28193093 to 28230736 37643 + protein coding gene olfactomedin 1
Tssr16904 2 28193107 to 28193114 7 + TSS region transcription start site region 16904
Tssr16905 2 28193128 to 28193183 55 + TSS region transcription start site region 16905
Tssr16906 2 28193192 to 28193214 22 + TSS region transcription start site region 16906
Tssr16907 2 28193219 to 28193236 17 + TSS region transcription start site region 16907
Tssr16908 2 28193249 to 28193278 29 + TSS region transcription start site region 16908
Tssr16909 2 28193295 to 28193304 9 + TSS region transcription start site region 16909
Tssr16910 2 28193323 to 28193338 15 + TSS region transcription start site region 16910
Cpgi11384 2 28204926 to 28206814 1888 CpG island CpG island 11384
Tssr16911 2 28205171 to 28205182 11 + TSS region transcription start site region 16911
Tssr16912 2 28205648 to 28205672 24 + TSS region transcription start site region 16912
Tssr16913 2 28208075 to 28208087 12 + TSS region transcription start site region 16913
Tssr16914 2 28208155 to 28208167 12 + TSS region transcription start site region 16914
Tssr16915 2 28214139 to 28214155 16 + TSS region transcription start site region 16915
Tssr16916 2 28222427 to 28222461 34 + TSS region transcription start site region 16916
Tssr16917 2 28229124 to 28229136 12 + TSS region transcription start site region 16917
Tssr16918 2 28229344 to 28229380 36 + TSS region transcription start site region 16918
Tssr16919 2 28229473 to 28229490 17 + TSS region transcription start site region 16919
Tssr16920 2 28229750 to 28229761 11 + TSS region transcription start site region 16920
Tssr16921 2 28229950 to 28229970 20 + TSS region transcription start site region 16921
Tssr16922 2 28230025 to 28230032 7 + TSS region transcription start site region 16922
Tssr16923 2 28230102 to 28230114 12 + TSS region transcription start site region 16923
Tssr16924 2 28230346 to 28230358 12 + TSS region transcription start site region 16924
Carcdq3 2 28289138 to 3233903 -25055235 QTL cardiac collagen deposition QTL 3
Gm13373 2 28315016 to 28324050 9034 - lincRNA gene predicted gene 13373
Tssr23235 2 28325473 to 28325481 8 - TSS region transcription start site region 23235
Tssr16925 2 28382324 to 28382330 6 + TSS region transcription start site region 16925
Cpgi11385 2 28446167 to 28447590 1423 CpG island CpG island 11385
Ppp1r26 2 28446800 to 28455508 8708 + protein coding gene protein phosphatase 1, regulatory subunit 26
Tssr16926 2 28446831 to 28446878 47 + TSS region transcription start site region 16926
Tssr16927 2 28446959 to 28446992 33 + TSS region transcription start site region 16927
1700007K13Rik 2 28462001 to 28466324 4323 - protein coding gene RIKEN cDNA 1700007K13 gene
Tssr23236 2 28466266 to 28466359 93 - TSS region transcription start site region 23236
Tssr23237 2 28466397 to 28466421 24 - TSS region transcription start site region 23237
Cpgi11386 2 28467823 to 28468566 743 CpG island CpG island 11386
Tssr16928 2 28468056 to 28468094 38 + TSS region transcription start site region 16928
Mrps2 2 28468066 to 28471178 3112 + protein coding gene mitochondrial ribosomal protein S2
Tssr16929 2 28469607 to 28469620 13 + TSS region transcription start site region 16929
Tssr16930 2 28469780 to 28469791 11 + TSS region transcription start site region 16930
Tssr16931 2 28469835 to 28469853 18 + TSS region transcription start site region 16931
Tssr16932 2 28477083 to 28477093 10 + TSS region transcription start site region 16932
Rpsa-ps9 2 28477166 to 28478050 884 + pseudogene ribosomal protein SA, pseudogene 9
Tssr16933 2 28479372 to 28479397 25 + TSS region transcription start site region 16933
Tssr16934 2 28480174 to 28480185 11 + TSS region transcription start site region 16934