Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:27656416-28116440

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11380 2 27676192 to 27678250 2058 CpG island CpG island 11380
Tssr16860 2 27676240 to 27676252 12 + TSS region transcription start site region 16860
Tssr16861 2 27676418 to 27676421 3 + TSS region transcription start site region 16861
Rxra 2 27676440 to 27762957 86517 + protein coding gene retinoid X receptor alpha
Tssr16862 2 27676441 to 27676454 13 + TSS region transcription start site region 16862
Tssr16863 2 27676959 to 27676989 30 + TSS region transcription start site region 16863
Tssr16864 2 27676993 to 27677005 12 + TSS region transcription start site region 16864
Tssr16865 2 27677094 to 27677105 11 + TSS region transcription start site region 16865
Tssr16866 2 27677140 to 27677175 35 + TSS region transcription start site region 16866
Tssr16867 2 27677214 to 27677229 15 + TSS region transcription start site region 16867
Tssr16868 2 27677234 to 27677295 61 + TSS region transcription start site region 16868
Tssr16869 2 27677297 to 27677308 11 + TSS region transcription start site region 16869
Tssr16870 2 27677317 to 27677340 23 + TSS region transcription start site region 16870
Tssr16871 2 27677392 to 27677403 11 + TSS region transcription start site region 16871
Tssr16872 2 27709247 to 27709249 2 + TSS region transcription start site region 16872
Tssr16873 2 27710274 to 27710281 7 + TSS region transcription start site region 16873
Tssr16874 2 27710296 to 27710308 12 + TSS region transcription start site region 16874
D2Mit120 2 27712048 to 27712193 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 120
Capsq1 2 27712048 to 84183040 56470992 QTL capsaicin sensitivity related QTL 1
Tssr23233 2 27714231 to 27714239 8 - TSS region transcription start site region 23233
Tssr445 2 27714279 to 27714294 15 - TSS region transcription start site region 445
Tssr16875 2 27714439 to 27714463 24 + TSS region transcription start site region 16875
Tssr16876 2 27714489 to 27714499 10 + TSS region transcription start site region 16876
Tssr16877 2 27728845 to 27728862 17 + TSS region transcription start site region 16877
Tssr16878 2 27736035 to 27736039 4 + TSS region transcription start site region 16878
Tssr16879 2 27744701 to 27744719 18 + TSS region transcription start site region 16879
Tssr16880 2 27761571 to 27761584 13 + TSS region transcription start site region 16880
D2Mit365 2 27806820 to 27806919 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 365
Gm39777 2 27832686 to 27838405 5719 - lncRNA gene predicted gene, 39777
2810430I11Rik 2 27882925 to 27887052 4127 - unclassified gene RIKEN cDNA 2810430I11 gene
Cpgi11381 2 27885894 to 27887479 1585 CpG island CpG island 11381
Tssr16881 2 27886005 to 27886047 42 + TSS region transcription start site region 16881
Tssr16882 2 27886384 to 27886395 11 + TSS region transcription start site region 16882
Tssr16883 2 27886416 to 27886440 24 + TSS region transcription start site region 16883
Col5a1 2 27886425 to 28039514 153089 + protein coding gene collagen, type V, alpha 1
Tssr16884 2 27886444 to 27886461 17 + TSS region transcription start site region 16884
Tssr16885 2 27886479 to 27886493 14 + TSS region transcription start site region 16885
Tssr16886 2 27895291 to 27895302 11 + TSS region transcription start site region 16886
Tssr16887 2 27911889 to 27911892 3 + TSS region transcription start site region 16887
Tssr446 2 27950634 to 27950651 17 + TSS region transcription start site region 446
Tssr16888 2 27951283 to 27951311 28 + TSS region transcription start site region 16888
Tssr16889 2 27951365 to 27951379 14 + TSS region transcription start site region 16889
Tssr16890 2 28001955 to 28001989 34 + TSS region transcription start site region 16890
Gm13372 2 28025417 to 28030437 5020 - unclassified non-coding RNA gene predicted gene 13372
Tssr16891 2 28032055 to 28032073 18 + TSS region transcription start site region 16891
Tssr16892 2 28032087 to 28032098 11 + TSS region transcription start site region 16892
Tssr16893 2 28032770 to 28032793 23 + TSS region transcription start site region 16893
Fcnb 2 28076479 to 28084903 8424 - protein coding gene ficolin B
Tssr16894 2 28076509 to 28076510 1 + TSS region transcription start site region 16894
Tssr23234 2 28084877 to 28084891 14 - TSS region transcription start site region 23234
Gm13371 2 28092032 to 28093514 1482 - lincRNA gene predicted gene 13371
Tssr16895 2 28095439 to 28095444 5 + TSS region transcription start site region 16895
Tssr16896 2 28095448 to 28095486 38 + TSS region transcription start site region 16896
F730016J06Rik 2 28095477 to 28127731 32254 + lincRNA gene RIKEN cDNA F730016J06 gene