Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:27431444-28341461

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit180 2 27434096 to 27434243 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 180
Brd3os 2 27442324 to 27444221 1897 + protein coding gene bromodomain containing 3, opposite strand
Cpgi11369 2 27442331 to 27442907 576 CpG island CpG island 11369
Tssr16849 2 27442457 to 27442570 113 + TSS region transcription start site region 16849
Brd3 2 27445576 to 27507657 62081 - protein coding gene bromodomain containing 3
Tssr23217 2 27447424 to 27447430 6 - TSS region transcription start site region 23217
Tssr23218 2 27447913 to 27447933 20 - TSS region transcription start site region 23218
Mir7578 2 27450549 to 27450630 81 - miRNA gene microRNA 7578
Tssr23219 2 27456989 to 27457005 16 - TSS region transcription start site region 23219
Tssr23220 2 27463994 to 27464008 14 - TSS region transcription start site region 23220
Tssr23221 2 27464566 to 27464581 15 - TSS region transcription start site region 23221
Cpgi11370 2 27474682 to 27476443 1761 CpG island CpG island 11370
Tssr23222 2 27475600 to 27475611 11 - TSS region transcription start site region 23222
Tssr23223 2 27475622 to 27475698 76 - TSS region transcription start site region 23223
Gm18548 2 27482772 to 27483348 576 + pseudogene predicted gene, 18548
Tssr443 2 27487600 to 27487606 6 + TSS region transcription start site region 443
Tssr16850 2 27487895 to 27487906 11 + TSS region transcription start site region 16850
Cpgi11371 2 27495801 to 27496011 210 CpG island CpG island 11371
Cpgi11372 2 27496358 to 27496881 523 CpG island CpG island 11372
Tssr16851 2 27496897 to 27496938 41 + TSS region transcription start site region 16851
Tssr16852 2 27496975 to 27496979 4 + TSS region transcription start site region 16852
Cpgi11373 2 27497417 to 27497919 502 CpG island CpG island 11373
Cpgi11374 2 27498246 to 27498461 215 CpG island CpG island 11374
Cpgi11375 2 27498967 to 27499451 484 CpG island CpG island 11375
Cpgi11376 2 27499779 to 27500226 447 CpG island CpG island 11376
Cpgi11377 2 27501161 to 27502074 913 CpG island CpG island 11377
Tssr16853 2 27505846 to 27505858 12 + TSS region transcription start site region 16853
Tssr16854 2 27506855 to 27506858 3 + TSS region transcription start site region 16854
Tssr23224 2 27507567 to 27507591 24 - TSS region transcription start site region 23224
Tssr23225 2 27507604 to 27507620 16 - TSS region transcription start site region 23225
Tssr23226 2 27507636 to 27507647 11 - TSS region transcription start site region 23226
Tssr23227 2 27507656 to 27507662 6 - TSS region transcription start site region 23227
Cpgi11378 2 27514619 to 27516023 1404 CpG island CpG island 11378
Tssr23228 2 27515051 to 27515089 38 - TSS region transcription start site region 23228
Wdr5 2 27515157 to 27536535 21378 + protein coding gene WD repeat domain 5
Tssr16855 2 27515162 to 27515217 55 + TSS region transcription start site region 16855
Tssr16856 2 27515218 to 27515229 11 + TSS region transcription start site region 16856
Tssr444 2 27535374 to 27535378 4 + TSS region transcription start site region 444
Gm25541 2 27539805 to 27539930 125 - snRNA gene predicted gene, 25541
Cpgi11379 2 27540111 to 27540625 514 CpG island CpG island 11379
Tssr16857 2 27540419 to 27540463 44 + TSS region transcription start site region 16857
Gm13421 2 27540426 to 27543362 2936 + lncRNA gene predicted gene 13421
Tssr16858 2 27544848 to 27544875 27 + TSS region transcription start site region 16858
Tssr23229 2 27548088 to 27548114 26 - TSS region transcription start site region 23229
Tssr23230 2 27570947 to 27570958 11 - TSS region transcription start site region 23230
Gm39776 2 27577654 to 27578897 1243 + lncRNA gene predicted gene, 39776
Tssr23231 2 27578664 to 27578670 6 - TSS region transcription start site region 23231
Tssr23232 2 27596359 to 27596381 22 - TSS region transcription start site region 23232
Tssr16859 2 27625195 to 27625200 5 + TSS region transcription start site region 16859
Cpgi11380 2 27676192 to 27678250 2058 CpG island CpG island 11380
Tssr16860 2 27676240 to 27676252 12 + TSS region transcription start site region 16860
Tssr16861 2 27676418 to 27676421 3 + TSS region transcription start site region 16861
Rxra 2 27676440 to 27762957 86517 + protein coding gene retinoid X receptor alpha
Tssr16862 2 27676441 to 27676454 13 + TSS region transcription start site region 16862
Tssr16863 2 27676959 to 27676989 30 + TSS region transcription start site region 16863
Tssr16864 2 27676993 to 27677005 12 + TSS region transcription start site region 16864
Tssr16865 2 27677094 to 27677105 11 + TSS region transcription start site region 16865
Tssr16866 2 27677140 to 27677175 35 + TSS region transcription start site region 16866
Tssr16867 2 27677214 to 27677229 15 + TSS region transcription start site region 16867
Tssr16868 2 27677234 to 27677295 61 + TSS region transcription start site region 16868
Tssr16869 2 27677297 to 27677308 11 + TSS region transcription start site region 16869
Tssr16870 2 27677317 to 27677340 23 + TSS region transcription start site region 16870
Tssr16871 2 27677392 to 27677403 11 + TSS region transcription start site region 16871
Tssr16872 2 27709247 to 27709249 2 + TSS region transcription start site region 16872
Tssr16873 2 27710274 to 27710281 7 + TSS region transcription start site region 16873
Tssr16874 2 27710296 to 27710308 12 + TSS region transcription start site region 16874
D2Mit120 2 27712048 to 27712193 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 120
Capsq1 2 27712048 to 84183040 56470992 QTL capsaicin sensitivity related QTL 1
Tssr23233 2 27714231 to 27714239 8 - TSS region transcription start site region 23233
Tssr445 2 27714279 to 27714294 15 - TSS region transcription start site region 445
Tssr16875 2 27714439 to 27714463 24 + TSS region transcription start site region 16875
Tssr16876 2 27714489 to 27714499 10 + TSS region transcription start site region 16876
Tssr16877 2 27728845 to 27728862 17 + TSS region transcription start site region 16877
Tssr16878 2 27736035 to 27736039 4 + TSS region transcription start site region 16878
Tssr16879 2 27744701 to 27744719 18 + TSS region transcription start site region 16879
Tssr16880 2 27761571 to 27761584 13 + TSS region transcription start site region 16880
D2Mit365 2 27806820 to 27806919 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 365
Gm39777 2 27832686 to 27838405 5719 - lncRNA gene predicted gene, 39777
2810430I11Rik 2 27882925 to 27887052 4127 - unclassified gene RIKEN cDNA 2810430I11 gene
Cpgi11381 2 27885894 to 27887479 1585 CpG island CpG island 11381
Tssr16881 2 27886005 to 27886047 42 + TSS region transcription start site region 16881
Tssr16882 2 27886384 to 27886395 11 + TSS region transcription start site region 16882
Tssr16883 2 27886416 to 27886440 24 + TSS region transcription start site region 16883
Col5a1 2 27886425 to 28039514 153089 + protein coding gene collagen, type V, alpha 1
Tssr16884 2 27886444 to 27886461 17 + TSS region transcription start site region 16884
Tssr16885 2 27886479 to 27886493 14 + TSS region transcription start site region 16885
Tssr16886 2 27895291 to 27895302 11 + TSS region transcription start site region 16886
Tssr16887 2 27911889 to 27911892 3 + TSS region transcription start site region 16887
Tssr446 2 27950634 to 27950651 17 + TSS region transcription start site region 446
Tssr16888 2 27951283 to 27951311 28 + TSS region transcription start site region 16888
Tssr16889 2 27951365 to 27951379 14 + TSS region transcription start site region 16889
Tssr16890 2 28001955 to 28001989 34 + TSS region transcription start site region 16890
Gm13372 2 28025417 to 28030437 5020 - unclassified non-coding RNA gene predicted gene 13372
Tssr16891 2 28032055 to 28032073 18 + TSS region transcription start site region 16891
Tssr16892 2 28032087 to 28032098 11 + TSS region transcription start site region 16892
Tssr16893 2 28032770 to 28032793 23 + TSS region transcription start site region 16893
Fcnb 2 28076479 to 28084903 8424 - protein coding gene ficolin B
Tssr16894 2 28076509 to 28076510 1 + TSS region transcription start site region 16894
Tssr23234 2 28084877 to 28084891 14 - TSS region transcription start site region 23234
Gm13371 2 28092032 to 28093514 1482 - lincRNA gene predicted gene 13371
Tssr16895 2 28095439 to 28095444 5 + TSS region transcription start site region 16895
Tssr16896 2 28095448 to 28095486 38 + TSS region transcription start site region 16896
F730016J06Rik 2 28095477 to 28127731 32254 + lincRNA gene RIKEN cDNA F730016J06 gene
Cpgi11382 2 28133734 to 28134004 270 CpG island CpG island 11382
Cpgi11383 2 28192650 to 28193937 1287 CpG island CpG island 11383
Tssr16897 2 28192910 to 28192921 11 + TSS region transcription start site region 16897
Tssr16898 2 28192932 to 28192937 5 + TSS region transcription start site region 16898
Tssr16899 2 28192938 to 28192970 32 + TSS region transcription start site region 16899
Tssr16900 2 28192971 to 28192985 14 + TSS region transcription start site region 16900
Tssr16901 2 28193007 to 28193028 21 + TSS region transcription start site region 16901
Tssr16902 2 28193043 to 28193050 7 + TSS region transcription start site region 16902
Tssr16903 2 28193069 to 28193076 7 + TSS region transcription start site region 16903
Olfm1 2 28193093 to 28230736 37643 + protein coding gene olfactomedin 1
Tssr16904 2 28193107 to 28193114 7 + TSS region transcription start site region 16904
Tssr16905 2 28193128 to 28193183 55 + TSS region transcription start site region 16905
Tssr16906 2 28193192 to 28193214 22 + TSS region transcription start site region 16906
Tssr16907 2 28193219 to 28193236 17 + TSS region transcription start site region 16907
Tssr16908 2 28193249 to 28193278 29 + TSS region transcription start site region 16908
Tssr16909 2 28193295 to 28193304 9 + TSS region transcription start site region 16909
Tssr16910 2 28193323 to 28193338 15 + TSS region transcription start site region 16910
Cpgi11384 2 28204926 to 28206814 1888 CpG island CpG island 11384
Tssr16911 2 28205171 to 28205182 11 + TSS region transcription start site region 16911
Tssr16912 2 28205648 to 28205672 24 + TSS region transcription start site region 16912
Tssr16913 2 28208075 to 28208087 12 + TSS region transcription start site region 16913
Tssr16914 2 28208155 to 28208167 12 + TSS region transcription start site region 16914
Tssr16915 2 28214139 to 28214155 16 + TSS region transcription start site region 16915
Tssr16916 2 28222427 to 28222461 34 + TSS region transcription start site region 16916
Tssr16917 2 28229124 to 28229136 12 + TSS region transcription start site region 16917
Tssr16918 2 28229344 to 28229380 36 + TSS region transcription start site region 16918
Tssr16919 2 28229473 to 28229490 17 + TSS region transcription start site region 16919
Tssr16920 2 28229750 to 28229761 11 + TSS region transcription start site region 16920
Tssr16921 2 28229950 to 28229970 20 + TSS region transcription start site region 16921
Tssr16922 2 28230025 to 28230032 7 + TSS region transcription start site region 16922
Tssr16923 2 28230102 to 28230114 12 + TSS region transcription start site region 16923
Tssr16924 2 28230346 to 28230358 12 + TSS region transcription start site region 16924
Carcdq3 2 28289138 to 3233903 -25055235 QTL cardiac collagen deposition QTL 3
Gm13373 2 28315016 to 28324050 9034 - lincRNA gene predicted gene 13373
Tssr23235 2 28325473 to 28325481 8 - TSS region transcription start site region 23235