Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:27350549-27550630

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vav2 2 27262104 to 27427033 164929 - protein coding gene vav 2 oncogene
Tssr23211 2 27392195 to 27392236 41 - TSS region transcription start site region 23211
Gm24049 2 27401852 to 27401951 99 + miRNA gene predicted gene, 24049
Tssr23212 2 27404725 to 27404727 2 - TSS region transcription start site region 23212
D2Mit431.1 2 27422136 to 27422266 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 431.1
D2Mit431 2 27422294 to 27422391 97 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 431
Cpgi11368 2 27425288 to 27427541 2253 CpG island CpG island 11368
Tssr23213 2 27426489 to 27426535 46 - TSS region transcription start site region 23213
Tssr23214 2 27426536 to 27426563 27 - TSS region transcription start site region 23214
Tssr23215 2 27426599 to 27426613 14 - TSS region transcription start site region 23215
Tssr23216 2 27426992 to 27427061 69 - TSS region transcription start site region 23216
D2Mit180 2 27434096 to 27434243 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 180
Brd3os 2 27442324 to 27444221 1897 + protein coding gene bromodomain containing 3, opposite strand
Cpgi11369 2 27442331 to 27442907 576 CpG island CpG island 11369
Tssr16849 2 27442457 to 27442570 113 + TSS region transcription start site region 16849
Brd3 2 27445576 to 27507657 62081 - protein coding gene bromodomain containing 3
Tssr23217 2 27447424 to 27447430 6 - TSS region transcription start site region 23217
Tssr23218 2 27447913 to 27447933 20 - TSS region transcription start site region 23218
Mir7578 2 27450549 to 27450630 81 - miRNA gene microRNA 7578
Tssr23219 2 27456989 to 27457005 16 - TSS region transcription start site region 23219
Tssr23220 2 27463994 to 27464008 14 - TSS region transcription start site region 23220
Tssr23221 2 27464566 to 27464581 15 - TSS region transcription start site region 23221
Cpgi11370 2 27474682 to 27476443 1761 CpG island CpG island 11370
Tssr23222 2 27475600 to 27475611 11 - TSS region transcription start site region 23222
Tssr23223 2 27475622 to 27475698 76 - TSS region transcription start site region 23223
Gm18548 2 27482772 to 27483348 576 + pseudogene predicted gene, 18548
Tssr443 2 27487600 to 27487606 6 + TSS region transcription start site region 443
Tssr16850 2 27487895 to 27487906 11 + TSS region transcription start site region 16850
Cpgi11371 2 27495801 to 27496011 210 CpG island CpG island 11371
Cpgi11372 2 27496358 to 27496881 523 CpG island CpG island 11372
Tssr16851 2 27496897 to 27496938 41 + TSS region transcription start site region 16851
Tssr16852 2 27496975 to 27496979 4 + TSS region transcription start site region 16852
Cpgi11373 2 27497417 to 27497919 502 CpG island CpG island 11373
Cpgi11374 2 27498246 to 27498461 215 CpG island CpG island 11374
Cpgi11375 2 27498967 to 27499451 484 CpG island CpG island 11375
Cpgi11376 2 27499779 to 27500226 447 CpG island CpG island 11376
Cpgi11377 2 27501161 to 27502074 913 CpG island CpG island 11377
Tssr16853 2 27505846 to 27505858 12 + TSS region transcription start site region 16853
Tssr16854 2 27506855 to 27506858 3 + TSS region transcription start site region 16854
Tssr23224 2 27507567 to 27507591 24 - TSS region transcription start site region 23224
Tssr23225 2 27507604 to 27507620 16 - TSS region transcription start site region 23225
Tssr23226 2 27507636 to 27507647 11 - TSS region transcription start site region 23226
Tssr23227 2 27507656 to 27507662 6 - TSS region transcription start site region 23227
Cpgi11378 2 27514619 to 27516023 1404 CpG island CpG island 11378
Tssr23228 2 27515051 to 27515089 38 - TSS region transcription start site region 23228
Wdr5 2 27515157 to 27536535 21378 + protein coding gene WD repeat domain 5
Tssr16855 2 27515162 to 27515217 55 + TSS region transcription start site region 16855
Tssr16856 2 27515218 to 27515229 11 + TSS region transcription start site region 16856
Tssr444 2 27535374 to 27535378 4 + TSS region transcription start site region 444
Gm25541 2 27539805 to 27539930 125 - snRNA gene predicted gene, 25541
Cpgi11379 2 27540111 to 27540625 514 CpG island CpG island 11379
Tssr16857 2 27540419 to 27540463 44 + TSS region transcription start site region 16857
Gm13421 2 27540426 to 27543362 2936 + lncRNA gene predicted gene 13421
Tssr16858 2 27544848 to 27544875 27 + TSS region transcription start site region 16858
Tssr23229 2 27548088 to 27548114 26 - TSS region transcription start site region 23229