Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:26617155-26952257

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20532 2 26586639 to 26635634 48995 + protein coding gene predicted gene 20532
Gm39772 2 26605994 to 26617362 11368 - lncRNA gene predicted gene, 39772
Tssr23150 2 26617451 to 26617459 8 - TSS region transcription start site region 23150
Tssr23151 2 26617462 to 26617473 11 - TSS region transcription start site region 23151
Tssr23152 2 26617477 to 26617483 6 - TSS region transcription start site region 23152
Cpgi11356 2 26628020 to 26629215 1195 CpG island CpG island 11356
Tssr16816 2 26628441 to 26628462 21 + TSS region transcription start site region 16816
Dipk1b 2 26628457 to 26636497 8040 + protein coding gene divergent protein kinase domain 1B
Tssr16817 2 26628465 to 26628550 85 + TSS region transcription start site region 16817
Tssr16818 2 26630504 to 26630528 24 + TSS region transcription start site region 16818
Snhg7 2 26637176 to 26640244 3068 - lncRNA gene small nucleolar RNA host gene 7
Snora43 2 26637847 to 26637985 138 - snoRNA gene small nucleolar RNA, H/ACA box 43
Snora17 2 26639190 to 26639321 131 - snoRNA gene small nucleolar RNA, H/ACA box 17
Cpgi11357 2 26639946 to 26640539 593 CpG island CpG island 11357
Tssr23153 2 26640079 to 26640091 12 - TSS region transcription start site region 23153
Tssr23154 2 26640236 to 26640249 13 - TSS region transcription start site region 23154
Snhg7os 2 26640390 to 26645944 5554 + antisense lncRNA gene small nucleolar RNA host gene 7, opposite strand
Gm2240 2 26648328 to 26652042 3714 + protein coding gene predicted gene 2240
Tssr23155 2 26657219 to 26657241 22 - TSS region transcription start site region 23155
Cpgi11358 2 26662379 to 26662670 291 CpG island CpG island 11358
Lcn4 2 26667674 to 26671282 3608 - protein coding gene lipocalin 4
Tssr23156 2 26668771 to 26668780 9 - TSS region transcription start site region 23156
Tssr23157 2 26668793 to 26668818 25 - TSS region transcription start site region 23157
Tssr23158 2 26671318 to 26671323 5 - TSS region transcription start site region 23158
Gm13359 2 26722390 to 26723081 691 - pseudogene predicted gene 13359
Tssr16819 2 26731717 to 26731725 8 + TSS region transcription start site region 16819
Gm39773 2 26731726 to 26736753 5027 + protein coding gene predicted gene, 39773
Gm39774 2 26782155 to 26787257 5102 - protein coding gene predicted gene, 39774
Abo 2 26842503 to 26864979 22476 - protein coding gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)
Cpgi11359 2 26856525 to 26856856 331 CpG island CpG island 11359
Tssr23159 2 26864943 to 26864966 23 - TSS region transcription start site region 23159
Surf6 2 26890772 to 26902813 12041 - protein coding gene surfeit gene 6
Cpgi11360 2 26902480 to 26903090 610 CpG island CpG island 11360
Tssr23160 2 26902785 to 26902828 43 - TSS region transcription start site region 23160
Tssr23161 2 26902829 to 26902906 77 - TSS region transcription start site region 23161
Tssr16820 2 26903063 to 26903094 31 + TSS region transcription start site region 16820
Med22 2 26905262 to 26910672 5410 - protein coding gene mediator complex subunit 22
Cpgi11361 2 26910095 to 26911421 1326 CpG island CpG island 11361
Tssr23162 2 26910533 to 26910563 30 - TSS region transcription start site region 23162
Tssr23163 2 26910574 to 26910650 76 - TSS region transcription start site region 23163
Tssr16821 2 26910747 to 26910769 22 + TSS region transcription start site region 16821
Rpl7a 2 26910764 to 26913318 2554 + protein coding gene ribosomal protein L7A
Tssr16822 2 26910796 to 26910820 24 + TSS region transcription start site region 16822
Gm23969 2 26911261 to 26911334 73 + snoRNA gene predicted gene, 23969
Tssr438 2 26911455 to 26911474 19 + TSS region transcription start site region 438
Gm22879 2 26912218 to 26912291 73 + snoRNA gene predicted gene, 22879
Gm24134 2 26912530 to 26912600 70 + snoRNA gene predicted gene, 24134
Tssr16823 2 26912531 to 26912533 2 + TSS region transcription start site region 16823
Tssr16824 2 26912849 to 26912851 2 + TSS region transcription start site region 16824
Tssr16825 2 26913379 to 26913406 27 + TSS region transcription start site region 16825
Surf1 2 26913381 to 26916530 3149 - protein coding gene surfeit gene 1
Tssr23164 2 26915690 to 26915698 8 - TSS region transcription start site region 23164
Cpgi11362 2 26916056 to 26916979 923 CpG island CpG island 11362
Tssr439 2 26916305 to 26916308 3 - TSS region transcription start site region 439
Tssr23165 2 26916323 to 26916365 42 - TSS region transcription start site region 23165
Tssr16826 2 26916360 to 26916396 36 + TSS region transcription start site region 16826
Surf2 2 26916365 to 26920172 3807 + protein coding gene surfeit gene 2
Tssr16827 2 26916400 to 26916421 21 + TSS region transcription start site region 16827
Tssr23166 2 26916505 to 26916551 46 - TSS region transcription start site region 23166
Tssr16828 2 26916787 to 26916835 48 + TSS region transcription start site region 16828
Surf4 2 26920041 to 26933776 13735 - protein coding gene surfeit gene 4
Gm36591 2 26928248 to 26933268 5020 - lncRNA gene predicted gene, 36591
Cpgi11363 2 26932609 to 26934247 1638 CpG island CpG island 11363
Tssr23167 2 26933332 to 26933349 17 - TSS region transcription start site region 23167
Tssr23168 2 26933355 to 26933396 41 - TSS region transcription start site region 23168
Tssr23169 2 26933403 to 26933467 64 - TSS region transcription start site region 23169
Tssr440 2 26933628 to 26933637 9 + TSS region transcription start site region 440
Tssr16829 2 26934028 to 26934084 56 + TSS region transcription start site region 16829
Stkld1 2 26934047 to 26953496 19449 + protein coding gene serine/threonine kinase-like domain containing 1
Gm39775 2 26949199 to 26952664 3465 - lncRNA gene predicted gene, 39775