Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:26502379-26822670

Filter by:
88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Notch1 2 26457902 to 26503822 45920 - protein coding gene notch 1
Cpgi11352 2 26502210 to 26504601 2391 CpG island CpG island 11352
Tssr23119 2 26502814 to 26502823 9 - TSS region transcription start site region 23119
Tssr23120 2 26503632 to 26503641 9 - TSS region transcription start site region 23120
Tssr23121 2 26503664 to 26503669 5 - TSS region transcription start site region 23121
Tssr23122 2 26503789 to 26503800 11 - TSS region transcription start site region 23122
Tssr23123 2 26503814 to 26503836 22 - TSS region transcription start site region 23123
Gm35978 2 26503927 to 26505347 1420 + lncRNA gene predicted gene, 35978
Tssr23124 2 26505336 to 26505340 4 - TSS region transcription start site region 23124
Tssr16800 2 26516028 to 26516039 11 + TSS region transcription start site region 16800
Tssr23125 2 26516379 to 26516383 4 - TSS region transcription start site region 23125
Cpgi11353 2 26516450 to 26516680 230 CpG island CpG island 11353
Tssr23126 2 26516620 to 26516635 15 - TSS region transcription start site region 23126
Tssr23127 2 26516729 to 26516741 12 - TSS region transcription start site region 23127
Gm36171 2 26547417 to 26555171 7754 - lncRNA gene predicted gene, 36171
Tssr23128 2 26556339 to 26556388 49 - TSS region transcription start site region 23128
Gm13358 2 26558625 to 26559193 568 + pseudogene predicted gene 13358
Tssr16801 2 26576077 to 26576107 30 + TSS region transcription start site region 16801
Tssr16802 2 26581011 to 26581023 12 + TSS region transcription start site region 16802
Tssr16803 2 26581024 to 26581039 15 + TSS region transcription start site region 16803
Tssr16804 2 26581050 to 26581061 11 + TSS region transcription start site region 16804
Egfl7 2 26581056 to 26592682 11626 + protein coding gene EGF-like domain 7
Tssr16805 2 26581066 to 26581069 3 + TSS region transcription start site region 16805
Tssr16806 2 26581077 to 26581093 16 + TSS region transcription start site region 16806
Tssr16807 2 26581122 to 26581135 13 + TSS region transcription start site region 16807
Tssr16808 2 26583858 to 26583874 16 + TSS region transcription start site region 16808
Cpgi11354 2 26586041 to 26587271 1230 CpG island CpG island 11354
Tssr16809 2 26586607 to 26586664 57 + TSS region transcription start site region 16809
Gm20532 2 26586639 to 26635634 48995 + protein coding gene predicted gene 20532
Mir126a 2 26591357 to 26591429 72 + miRNA gene microRNA 126a
Mir126b 2 26591363 to 26591420 57 - miRNA gene microRNA 126b
Tssr16810 2 26591423 to 26591426 3 + TSS region transcription start site region 16810
Tssr23129 2 26592679 to 26592680 1 - TSS region transcription start site region 23129
Agpat2 2 26593057 to 26604417 11360 - protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
Tssr23130 2 26593420 to 26593431 11 - TSS region transcription start site region 23130
Tssr23131 2 26594933 to 26594945 12 - TSS region transcription start site region 23131
Tssr23132 2 26596364 to 26596378 14 - TSS region transcription start site region 23132
Tssr23133 2 26601638 to 26601645 7 - TSS region transcription start site region 23133
D2Mit417 2 26601731 to 26601853 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 417
Tssr23134 2 26601925 to 26601928 3 - TSS region transcription start site region 23134
Tssr23135 2 26602202 to 26602213 11 - TSS region transcription start site region 23135
Cpgi11355 2 26603326 to 26604900 1574 CpG island CpG island 11355
Tssr16811 2 26604059 to 26604074 15 + TSS region transcription start site region 16811
Tssr23136 2 26604163 to 26604174 11 - TSS region transcription start site region 23136
Tssr23137 2 26604200 to 26604227 27 - TSS region transcription start site region 23137
Tssr23138 2 26604235 to 26604252 17 - TSS region transcription start site region 23138
Tssr23139 2 26604267 to 26604309 42 - TSS region transcription start site region 23139
Tssr23140 2 26604398 to 26604430 32 - TSS region transcription start site region 23140
Tssr16812 2 26604504 to 26604506 2 + TSS region transcription start site region 16812
Tssr23141 2 26604581 to 26604625 44 - TSS region transcription start site region 23141
Gm39772 2 26605994 to 26617362 11368 - lncRNA gene predicted gene, 39772
Tssr23142 2 26607814 to 26607825 11 - TSS region transcription start site region 23142
Tssr23143 2 26607985 to 26608001 16 - TSS region transcription start site region 23143
Tssr23144 2 26608066 to 26608073 7 - TSS region transcription start site region 23144
Tssr23145 2 26608152 to 26608163 11 - TSS region transcription start site region 23145
Tssr23146 2 26608172 to 26608193 21 - TSS region transcription start site region 23146
Tssr23147 2 26608254 to 26608261 7 - TSS region transcription start site region 23147
Tssr23148 2 26608619 to 26608634 15 - TSS region transcription start site region 23148
Tssr23149 2 26608670 to 26608675 5 - TSS region transcription start site region 23149
Tssr16813 2 26609762 to 26609773 11 + TSS region transcription start site region 16813
Tssr16814 2 26609801 to 26609812 11 + TSS region transcription start site region 16814
Tssr16815 2 26610688 to 26610692 4 + TSS region transcription start site region 16815
Tssr23150 2 26617451 to 26617459 8 - TSS region transcription start site region 23150
Tssr23151 2 26617462 to 26617473 11 - TSS region transcription start site region 23151
Tssr23152 2 26617477 to 26617483 6 - TSS region transcription start site region 23152
Cpgi11356 2 26628020 to 26629215 1195 CpG island CpG island 11356
Tssr16816 2 26628441 to 26628462 21 + TSS region transcription start site region 16816
Dipk1b 2 26628457 to 26636497 8040 + protein coding gene divergent protein kinase domain 1B
Tssr16817 2 26628465 to 26628550 85 + TSS region transcription start site region 16817
Tssr16818 2 26630504 to 26630528 24 + TSS region transcription start site region 16818
Snhg7 2 26637176 to 26640244 3068 - lncRNA gene small nucleolar RNA host gene 7
Snora43 2 26637847 to 26637985 138 - snoRNA gene small nucleolar RNA, H/ACA box 43
Snora17 2 26639190 to 26639321 131 - snoRNA gene small nucleolar RNA, H/ACA box 17
Cpgi11357 2 26639946 to 26640539 593 CpG island CpG island 11357
Tssr23153 2 26640079 to 26640091 12 - TSS region transcription start site region 23153
Tssr23154 2 26640236 to 26640249 13 - TSS region transcription start site region 23154
Snhg7os 2 26640390 to 26645944 5554 + antisense lncRNA gene small nucleolar RNA host gene 7, opposite strand
Gm2240 2 26648328 to 26652042 3714 + protein coding gene predicted gene 2240
Tssr23155 2 26657219 to 26657241 22 - TSS region transcription start site region 23155
Cpgi11358 2 26662379 to 26662670 291 CpG island CpG island 11358
Lcn4 2 26667674 to 26671282 3608 - protein coding gene lipocalin 4
Tssr23156 2 26668771 to 26668780 9 - TSS region transcription start site region 23156
Tssr23157 2 26668793 to 26668818 25 - TSS region transcription start site region 23157
Tssr23158 2 26671318 to 26671323 5 - TSS region transcription start site region 23158
Gm13359 2 26722390 to 26723081 691 - pseudogene predicted gene 13359
Tssr16819 2 26731717 to 26731725 8 + TSS region transcription start site region 16819
Gm39773 2 26731726 to 26736753 5027 + protein coding gene predicted gene, 39773
Gm39774 2 26782155 to 26787257 5102 - protein coding gene predicted gene, 39774