Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:26357902-26603822

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Card9 2 26352176 to 26360918 8742 - protein coding gene caspase recruitment domain family, member 9
Gm13562 2 26352645 to 26371952 19307 + unclassified non-coding RNA gene predicted gene 13562
Tssr23101 2 26360843 to 26360872 29 - TSS region transcription start site region 23101
Tssr23102 2 26360873 to 26360914 41 - TSS region transcription start site region 23102
Snapc4 2 26362765 to 26380653 17888 - protein coding gene small nuclear RNA activating complex, polypeptide 4
Cpgi11348 2 26380194 to 26380818 624 CpG island CpG island 11348
Tssr23103 2 26380600 to 26380654 54 - TSS region transcription start site region 23103
Tssr16791 2 26380696 to 26380735 39 + TSS region transcription start site region 16791
Gm13563 2 26381526 to 26389018 7492 + antisense lncRNA gene predicted gene 13563
Entr1 2 26382802 to 26389316 6514 - protein coding gene endosome associated trafficking regulator 1
9430022A06Rik 2 26383357 to 26385155 1798 unclassified gene RIKEN cDNA 9430022A06 gene
Cpgi11349 2 26388475 to 26389794 1319 CpG island CpG island 11349
Tssr23104 2 26389267 to 26389323 56 - TSS region transcription start site region 23104
Tssr16792 2 26389334 to 26389364 30 + TSS region transcription start site region 16792
Pmpca 2 26389348 to 26397121 7773 + protein coding gene peptidase (mitochondrial processing) alpha
Tssr16793 2 26389370 to 26389381 11 + TSS region transcription start site region 16793
Inpp5e 2 26396249 to 26409203 12954 - protein coding gene inositol polyphosphate-5-phosphatase E
Cpgi11350 2 26408554 to 26409598 1044 CpG island CpG island 11350
Tssr23105 2 26409100 to 26409133 33 - TSS region transcription start site region 23105
Tssr23106 2 26409161 to 26409209 48 - TSS region transcription start site region 23106
Tssr23107 2 26409213 to 26409236 23 - TSS region transcription start site region 23107
Sec16a 2 26409431 to 26445216 35785 - protein coding gene SEC16 homolog A, endoplasmic reticulum export factor
Tssr23108 2 26438635 to 26438640 5 - TSS region transcription start site region 23108
Tssr23109 2 26440968 to 26440971 3 - TSS region transcription start site region 23109
Cpgi11351 2 26444730 to 26446430 1700 CpG island CpG island 11351
Tssr23110 2 26445110 to 26445116 6 - TSS region transcription start site region 23110
Tssr23111 2 26445175 to 26445226 51 - TSS region transcription start site region 23111
0610009E02Rik 2 26445605 to 26457995 12390 + unclassified non-coding RNA gene RIKEN cDNA 0610009E02 gene
Tssr23112 2 26445837 to 26445852 15 - TSS region transcription start site region 23112
Tssr23113 2 26445880 to 26445896 16 - TSS region transcription start site region 23113
Tssr16794 2 26445894 to 26445951 57 + TSS region transcription start site region 16794
Tssr16795 2 26446021 to 26446033 12 + TSS region transcription start site region 16795
Tssr16796 2 26454964 to 26454965 1 + TSS region transcription start site region 16796
Gm13568 2 26457144 to 26458316 1172 + unclassified non-coding RNA gene predicted gene 13568
Notch1 2 26457902 to 26503822 45920 - protein coding gene notch 1
Tssr23114 2 26463753 to 26463766 13 - TSS region transcription start site region 23114
Mir6996 2 26470059 to 26470119 60 - miRNA gene microRNA 6996
Tssr16797 2 26475314 to 26475323 9 + TSS region transcription start site region 16797
Tssr23115 2 26476116 to 26476128 12 - TSS region transcription start site region 23115
Tssr23116 2 26476130 to 26476165 35 - TSS region transcription start site region 23116
Tssr23117 2 26476170 to 26476180 10 - TSS region transcription start site region 23117
Tssr437 2 26476449 to 26476490 41 + TSS region transcription start site region 437
Amzn4 2 26494434 to 26494563 129 QTL anatomical modifier of Zfp423 4
Insq7 2 26494434 to 26494563 129 QTL insulin QTL 7
D2Mit151 2 26494434 to 26494563 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 151
Tssr16798 2 26498413 to 26498455 42 + TSS region transcription start site region 16798
Tssr16799 2 26501873 to 26501876 3 + TSS region transcription start site region 16799
Tssr23118 2 26502201 to 26502220 19 - TSS region transcription start site region 23118
Cpgi11352 2 26502210 to 26504601 2391 CpG island CpG island 11352
Tssr23119 2 26502814 to 26502823 9 - TSS region transcription start site region 23119
Tssr23120 2 26503632 to 26503641 9 - TSS region transcription start site region 23120
Tssr23121 2 26503664 to 26503669 5 - TSS region transcription start site region 23121
Tssr23122 2 26503789 to 26503800 11 - TSS region transcription start site region 23122
Tssr23123 2 26503814 to 26503836 22 - TSS region transcription start site region 23123
Gm35978 2 26503927 to 26505347 1420 + lncRNA gene predicted gene, 35978
Tssr23124 2 26505336 to 26505340 4 - TSS region transcription start site region 23124
Tssr16800 2 26516028 to 26516039 11 + TSS region transcription start site region 16800
Tssr23125 2 26516379 to 26516383 4 - TSS region transcription start site region 23125
Cpgi11353 2 26516450 to 26516680 230 CpG island CpG island 11353
Tssr23126 2 26516620 to 26516635 15 - TSS region transcription start site region 23126
Tssr23127 2 26516729 to 26516741 12 - TSS region transcription start site region 23127
Gm36171 2 26547417 to 26555171 7754 - lncRNA gene predicted gene, 36171
Tssr23128 2 26556339 to 26556388 49 - TSS region transcription start site region 23128
Gm13358 2 26558625 to 26559193 568 + pseudogene predicted gene 13358
Tssr16801 2 26576077 to 26576107 30 + TSS region transcription start site region 16801
Tssr16802 2 26581011 to 26581023 12 + TSS region transcription start site region 16802
Tssr16803 2 26581024 to 26581039 15 + TSS region transcription start site region 16803
Tssr16804 2 26581050 to 26581061 11 + TSS region transcription start site region 16804
Egfl7 2 26581056 to 26592682 11626 + protein coding gene EGF-like domain 7
Tssr16805 2 26581066 to 26581069 3 + TSS region transcription start site region 16805
Tssr16806 2 26581077 to 26581093 16 + TSS region transcription start site region 16806
Tssr16807 2 26581122 to 26581135 13 + TSS region transcription start site region 16807
Tssr16808 2 26583858 to 26583874 16 + TSS region transcription start site region 16808
Cpgi11354 2 26586041 to 26587271 1230 CpG island CpG island 11354
Tssr16809 2 26586607 to 26586664 57 + TSS region transcription start site region 16809
Gm20532 2 26586639 to 26635634 48995 + protein coding gene predicted gene 20532
Mir126a 2 26591357 to 26591429 72 + miRNA gene microRNA 126a
Mir126b 2 26591363 to 26591420 57 - miRNA gene microRNA 126b
Tssr16810 2 26591423 to 26591426 3 + TSS region transcription start site region 16810
Tssr23129 2 26592679 to 26592680 1 - TSS region transcription start site region 23129
Agpat2 2 26593057 to 26604417 11360 - protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
Tssr23130 2 26593420 to 26593431 11 - TSS region transcription start site region 23130
Tssr23131 2 26594933 to 26594945 12 - TSS region transcription start site region 23131
Tssr23132 2 26596364 to 26596378 14 - TSS region transcription start site region 23132
Tssr23133 2 26601638 to 26601645 7 - TSS region transcription start site region 23133
D2Mit417 2 26601731 to 26601853 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 417
Tssr23134 2 26601925 to 26601928 3 - TSS region transcription start site region 23134
Tssr23135 2 26602202 to 26602213 11 - TSS region transcription start site region 23135
Cpgi11355 2 26603326 to 26604900 1574 CpG island CpG island 11355