Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:26200079-27080091

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259 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhx3 2 26200212 to 26208249 8037 - protein coding gene LIM homeobox protein 3
Cpgi11342 2 26201884 to 26203397 1513 CpG island CpG island 11342
Tssr23082 2 26204577 to 26204590 13 - TSS region transcription start site region 23082
Tssr23083 2 26204611 to 26204622 11 - TSS region transcription start site region 23083
Tssr23084 2 26204625 to 26204636 11 - TSS region transcription start site region 23084
Tssr436 2 26204644 to 26204648 4 - TSS region transcription start site region 436
Tssr23085 2 26204656 to 26204661 5 - TSS region transcription start site region 23085
Cpgi11343 2 26205209 to 26205449 240 CpG island CpG island 11343
Cpgi11344 2 26206070 to 26207102 1032 CpG island CpG island 11344
Tssr23086 2 26206535 to 26206580 45 - TSS region transcription start site region 23086
Tssr16779 2 26206675 to 26206686 11 + TSS region transcription start site region 16779
Gm27196 2 26206702 to 26209283 2581 + antisense lncRNA gene predicted gene 27196
Tssr23087 2 26208281 to 26208293 12 - TSS region transcription start site region 23087
Qsox2 2 26209124 to 26237399 28275 - protein coding gene quiescin Q6 sulfhydryl oxidase 2
Cpgi11345 2 26236675 to 26237666 991 CpG island CpG island 11345
Tssr23088 2 26237348 to 26237367 19 - TSS region transcription start site region 23088
Tssr23089 2 26237368 to 26237386 18 - TSS region transcription start site region 23089
Ccdc187 2 26243469 to 26294557 51088 - protein coding gene coiled-coil domain containing 187
Tssr16780 2 26267332 to 26267333 1 + TSS region transcription start site region 16780
Tssr16781 2 26278704 to 26278709 5 + TSS region transcription start site region 16781
Gm35807 2 26293958 to 26302044 8086 + lncRNA gene predicted gene, 35807
Tssr23090 2 26294511 to 26294515 4 - TSS region transcription start site region 23090
Tssr23091 2 26294525 to 26294534 9 - TSS region transcription start site region 23091
Tssr23092 2 26294550 to 26294561 11 - TSS region transcription start site region 23092
Tssr23093 2 26294579 to 26294588 9 - TSS region transcription start site region 23093
Tssr23094 2 26294598 to 26294625 27 - TSS region transcription start site region 23094
Tssr16782 2 26294706 to 26294723 17 + TSS region transcription start site region 16782
Tssr16783 2 26294726 to 26294740 14 + TSS region transcription start site region 16783
Tssr23095 2 26300157 to 26300190 33 - TSS region transcription start site region 23095
Tssr23096 2 26300191 to 26300206 15 - TSS region transcription start site region 23096
Cpgi11346 2 26315128 to 26316424 1296 CpG island CpG island 11346
Tssr16784 2 26315459 to 26315466 7 + TSS region transcription start site region 16784
Tssr16785 2 26315483 to 26315502 19 + TSS region transcription start site region 16785
Tssr16786 2 26315513 to 26315602 89 + TSS region transcription start site region 16786
Gpsm1 2 26315515 to 26348237 32722 + protein coding gene G-protein signalling modulator 1 (AGS3-like, C. elegans)
Tssr16787 2 26319741 to 26319757 16 + TSS region transcription start site region 16787
Tssr16788 2 26330426 to 26330441 15 + TSS region transcription start site region 16788
Tssr16789 2 26339425 to 26339451 26 + TSS region transcription start site region 16789
Tssr16790 2 26342282 to 26342295 13 + TSS region transcription start site region 16790
Dnlz 2 26348121 to 26352110 3989 - protein coding gene DNL-type zinc finger
Cpgi11347 2 26351325 to 26352970 1645 CpG island CpG island 11347
Tssr23097 2 26351987 to 26352053 66 - TSS region transcription start site region 23097
Tssr23098 2 26352067 to 26352115 48 - TSS region transcription start site region 23098
Card9 2 26352176 to 26360918 8742 - protein coding gene caspase recruitment domain family, member 9
Tssr23099 2 26352234 to 26352237 3 - TSS region transcription start site region 23099
Gm13562 2 26352645 to 26371952 19307 + unclassified non-coding RNA gene predicted gene 13562
Tssr23100 2 26356838 to 26356905 67 - TSS region transcription start site region 23100
Tssr23101 2 26360843 to 26360872 29 - TSS region transcription start site region 23101
Tssr23102 2 26360873 to 26360914 41 - TSS region transcription start site region 23102
Snapc4 2 26362765 to 26380653 17888 - protein coding gene small nuclear RNA activating complex, polypeptide 4
Cpgi11348 2 26380194 to 26380818 624 CpG island CpG island 11348
Tssr23103 2 26380600 to 26380654 54 - TSS region transcription start site region 23103
Tssr16791 2 26380696 to 26380735 39 + TSS region transcription start site region 16791
Gm13563 2 26381526 to 26389018 7492 + antisense lncRNA gene predicted gene 13563
Entr1 2 26382802 to 26389316 6514 - protein coding gene endosome associated trafficking regulator 1
9430022A06Rik 2 26383357 to 26385155 1798 unclassified gene RIKEN cDNA 9430022A06 gene
Cpgi11349 2 26388475 to 26389794 1319 CpG island CpG island 11349
Tssr23104 2 26389267 to 26389323 56 - TSS region transcription start site region 23104
Tssr16792 2 26389334 to 26389364 30 + TSS region transcription start site region 16792
Pmpca 2 26389348 to 26397121 7773 + protein coding gene peptidase (mitochondrial processing) alpha
Tssr16793 2 26389370 to 26389381 11 + TSS region transcription start site region 16793
Inpp5e 2 26396249 to 26409203 12954 - protein coding gene inositol polyphosphate-5-phosphatase E
Cpgi11350 2 26408554 to 26409598 1044 CpG island CpG island 11350
Tssr23105 2 26409100 to 26409133 33 - TSS region transcription start site region 23105
Tssr23106 2 26409161 to 26409209 48 - TSS region transcription start site region 23106
Tssr23107 2 26409213 to 26409236 23 - TSS region transcription start site region 23107
Sec16a 2 26409431 to 26445216 35785 - protein coding gene SEC16 homolog A, endoplasmic reticulum export factor
Tssr23108 2 26438635 to 26438640 5 - TSS region transcription start site region 23108
Tssr23109 2 26440968 to 26440971 3 - TSS region transcription start site region 23109
Cpgi11351 2 26444730 to 26446430 1700 CpG island CpG island 11351
Tssr23110 2 26445110 to 26445116 6 - TSS region transcription start site region 23110
Tssr23111 2 26445175 to 26445226 51 - TSS region transcription start site region 23111
0610009E02Rik 2 26445605 to 26457995 12390 + unclassified non-coding RNA gene RIKEN cDNA 0610009E02 gene
Tssr23112 2 26445837 to 26445852 15 - TSS region transcription start site region 23112
Tssr23113 2 26445880 to 26445896 16 - TSS region transcription start site region 23113
Tssr16794 2 26445894 to 26445951 57 + TSS region transcription start site region 16794
Tssr16795 2 26446021 to 26446033 12 + TSS region transcription start site region 16795
Tssr16796 2 26454964 to 26454965 1 + TSS region transcription start site region 16796
Gm13568 2 26457144 to 26458316 1172 + unclassified non-coding RNA gene predicted gene 13568
Notch1 2 26457902 to 26503822 45920 - protein coding gene notch 1
Tssr23114 2 26463753 to 26463766 13 - TSS region transcription start site region 23114
Mir6996 2 26470059 to 26470119 60 - miRNA gene microRNA 6996
Tssr16797 2 26475314 to 26475323 9 + TSS region transcription start site region 16797
Tssr23115 2 26476116 to 26476128 12 - TSS region transcription start site region 23115
Tssr23116 2 26476130 to 26476165 35 - TSS region transcription start site region 23116
Tssr23117 2 26476170 to 26476180 10 - TSS region transcription start site region 23117
Tssr437 2 26476449 to 26476490 41 + TSS region transcription start site region 437
D2Mit151 2 26494434 to 26494563 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 151
Amzn4 2 26494434 to 26494563 129 QTL anatomical modifier of Zfp423 4
Insq7 2 26494434 to 26494563 129 QTL insulin QTL 7
Tssr16798 2 26498413 to 26498455 42 + TSS region transcription start site region 16798
Tssr16799 2 26501873 to 26501876 3 + TSS region transcription start site region 16799
Tssr23118 2 26502201 to 26502220 19 - TSS region transcription start site region 23118
Cpgi11352 2 26502210 to 26504601 2391 CpG island CpG island 11352
Tssr23119 2 26502814 to 26502823 9 - TSS region transcription start site region 23119
Tssr23120 2 26503632 to 26503641 9 - TSS region transcription start site region 23120
Tssr23121 2 26503664 to 26503669 5 - TSS region transcription start site region 23121
Tssr23122 2 26503789 to 26503800 11 - TSS region transcription start site region 23122
Tssr23123 2 26503814 to 26503836 22 - TSS region transcription start site region 23123
Gm35978 2 26503927 to 26505347 1420 + lncRNA gene predicted gene, 35978
Tssr23124 2 26505336 to 26505340 4 - TSS region transcription start site region 23124
Tssr16800 2 26516028 to 26516039 11 + TSS region transcription start site region 16800
Tssr23125 2 26516379 to 26516383 4 - TSS region transcription start site region 23125
Cpgi11353 2 26516450 to 26516680 230 CpG island CpG island 11353
Tssr23126 2 26516620 to 26516635 15 - TSS region transcription start site region 23126
Tssr23127 2 26516729 to 26516741 12 - TSS region transcription start site region 23127
Gm36171 2 26547417 to 26555171 7754 - lncRNA gene predicted gene, 36171
Tssr23128 2 26556339 to 26556388 49 - TSS region transcription start site region 23128
Gm13358 2 26558625 to 26559193 568 + pseudogene predicted gene 13358
Tssr16801 2 26576077 to 26576107 30 + TSS region transcription start site region 16801
Tssr16802 2 26581011 to 26581023 12 + TSS region transcription start site region 16802
Tssr16803 2 26581024 to 26581039 15 + TSS region transcription start site region 16803
Tssr16804 2 26581050 to 26581061 11 + TSS region transcription start site region 16804
Egfl7 2 26581056 to 26592682 11626 + protein coding gene EGF-like domain 7
Tssr16805 2 26581066 to 26581069 3 + TSS region transcription start site region 16805
Tssr16806 2 26581077 to 26581093 16 + TSS region transcription start site region 16806
Tssr16807 2 26581122 to 26581135 13 + TSS region transcription start site region 16807
Tssr16808 2 26583858 to 26583874 16 + TSS region transcription start site region 16808
Cpgi11354 2 26586041 to 26587271 1230 CpG island CpG island 11354
Tssr16809 2 26586607 to 26586664 57 + TSS region transcription start site region 16809
Gm20532 2 26586639 to 26635634 48995 + protein coding gene predicted gene 20532
Mir126a 2 26591357 to 26591429 72 + miRNA gene microRNA 126a
Mir126b 2 26591363 to 26591420 57 - miRNA gene microRNA 126b
Tssr16810 2 26591423 to 26591426 3 + TSS region transcription start site region 16810
Tssr23129 2 26592679 to 26592680 1 - TSS region transcription start site region 23129
Agpat2 2 26593057 to 26604417 11360 - protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
Tssr23130 2 26593420 to 26593431 11 - TSS region transcription start site region 23130
Tssr23131 2 26594933 to 26594945 12 - TSS region transcription start site region 23131
Tssr23132 2 26596364 to 26596378 14 - TSS region transcription start site region 23132
Tssr23133 2 26601638 to 26601645 7 - TSS region transcription start site region 23133
D2Mit417 2 26601731 to 26601853 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 417
Tssr23134 2 26601925 to 26601928 3 - TSS region transcription start site region 23134
Tssr23135 2 26602202 to 26602213 11 - TSS region transcription start site region 23135
Cpgi11355 2 26603326 to 26604900 1574 CpG island CpG island 11355
Tssr16811 2 26604059 to 26604074 15 + TSS region transcription start site region 16811
Tssr23136 2 26604163 to 26604174 11 - TSS region transcription start site region 23136
Tssr23137 2 26604200 to 26604227 27 - TSS region transcription start site region 23137
Tssr23138 2 26604235 to 26604252 17 - TSS region transcription start site region 23138
Tssr23139 2 26604267 to 26604309 42 - TSS region transcription start site region 23139
Tssr23140 2 26604398 to 26604430 32 - TSS region transcription start site region 23140
Tssr16812 2 26604504 to 26604506 2 + TSS region transcription start site region 16812
Tssr23141 2 26604581 to 26604625 44 - TSS region transcription start site region 23141
Gm39772 2 26605994 to 26617362 11368 - lncRNA gene predicted gene, 39772
Tssr23142 2 26607814 to 26607825 11 - TSS region transcription start site region 23142
Tssr23143 2 26607985 to 26608001 16 - TSS region transcription start site region 23143
Tssr23144 2 26608066 to 26608073 7 - TSS region transcription start site region 23144
Tssr23145 2 26608152 to 26608163 11 - TSS region transcription start site region 23145
Tssr23146 2 26608172 to 26608193 21 - TSS region transcription start site region 23146
Tssr23147 2 26608254 to 26608261 7 - TSS region transcription start site region 23147
Tssr23148 2 26608619 to 26608634 15 - TSS region transcription start site region 23148
Tssr23149 2 26608670 to 26608675 5 - TSS region transcription start site region 23149
Tssr16813 2 26609762 to 26609773 11 + TSS region transcription start site region 16813
Tssr16814 2 26609801 to 26609812 11 + TSS region transcription start site region 16814
Tssr16815 2 26610688 to 26610692 4 + TSS region transcription start site region 16815
Tssr23150 2 26617451 to 26617459 8 - TSS region transcription start site region 23150
Tssr23151 2 26617462 to 26617473 11 - TSS region transcription start site region 23151
Tssr23152 2 26617477 to 26617483 6 - TSS region transcription start site region 23152
Cpgi11356 2 26628020 to 26629215 1195 CpG island CpG island 11356
Tssr16816 2 26628441 to 26628462 21 + TSS region transcription start site region 16816
Dipk1b 2 26628457 to 26636497 8040 + protein coding gene divergent protein kinase domain 1B
Tssr16817 2 26628465 to 26628550 85 + TSS region transcription start site region 16817
Tssr16818 2 26630504 to 26630528 24 + TSS region transcription start site region 16818
Snhg7 2 26637176 to 26640244 3068 - lncRNA gene small nucleolar RNA host gene 7
Snora43 2 26637847 to 26637985 138 - snoRNA gene small nucleolar RNA, H/ACA box 43
Snora17 2 26639190 to 26639321 131 - snoRNA gene small nucleolar RNA, H/ACA box 17
Cpgi11357 2 26639946 to 26640539 593 CpG island CpG island 11357
Tssr23153 2 26640079 to 26640091 12 - TSS region transcription start site region 23153
Tssr23154 2 26640236 to 26640249 13 - TSS region transcription start site region 23154
Snhg7os 2 26640390 to 26645944 5554 + antisense lncRNA gene small nucleolar RNA host gene 7, opposite strand
Gm2240 2 26648328 to 26652042 3714 + protein coding gene predicted gene 2240
Tssr23155 2 26657219 to 26657241 22 - TSS region transcription start site region 23155
Cpgi11358 2 26662379 to 26662670 291 CpG island CpG island 11358
Lcn4 2 26667674 to 26671282 3608 - protein coding gene lipocalin 4
Tssr23156 2 26668771 to 26668780 9 - TSS region transcription start site region 23156
Tssr23157 2 26668793 to 26668818 25 - TSS region transcription start site region 23157
Tssr23158 2 26671318 to 26671323 5 - TSS region transcription start site region 23158
Gm13359 2 26722390 to 26723081 691 - pseudogene predicted gene 13359
Tssr16819 2 26731717 to 26731725 8 + TSS region transcription start site region 16819
Gm39773 2 26731726 to 26736753 5027 + protein coding gene predicted gene, 39773
Gm39774 2 26782155 to 26787257 5102 - protein coding gene predicted gene, 39774
Abo 2 26842503 to 26864979 22476 - protein coding gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)
Cpgi11359 2 26856525 to 26856856 331 CpG island CpG island 11359
Tssr23159 2 26864943 to 26864966 23 - TSS region transcription start site region 23159
Surf6 2 26890772 to 26902813 12041 - protein coding gene surfeit gene 6
Cpgi11360 2 26902480 to 26903090 610 CpG island CpG island 11360
Tssr23160 2 26902785 to 26902828 43 - TSS region transcription start site region 23160
Tssr23161 2 26902829 to 26902906 77 - TSS region transcription start site region 23161
Tssr16820 2 26903063 to 26903094 31 + TSS region transcription start site region 16820
Med22 2 26905262 to 26910672 5410 - protein coding gene mediator complex subunit 22
Cpgi11361 2 26910095 to 26911421 1326 CpG island CpG island 11361
Tssr23162 2 26910533 to 26910563 30 - TSS region transcription start site region 23162
Tssr23163 2 26910574 to 26910650 76 - TSS region transcription start site region 23163
Tssr16821 2 26910747 to 26910769 22 + TSS region transcription start site region 16821
Rpl7a 2 26910764 to 26913318 2554 + protein coding gene ribosomal protein L7A
Tssr16822 2 26910796 to 26910820 24 + TSS region transcription start site region 16822
Gm23969 2 26911261 to 26911334 73 + snoRNA gene predicted gene, 23969
Tssr438 2 26911455 to 26911474 19 + TSS region transcription start site region 438
Gm22879 2 26912218 to 26912291 73 + snoRNA gene predicted gene, 22879
Gm24134 2 26912530 to 26912600 70 + snoRNA gene predicted gene, 24134
Tssr16823 2 26912531 to 26912533 2 + TSS region transcription start site region 16823