Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:26144550-26444561

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr16778 2 26154311 to 26154317 6 + TSS region transcription start site region 16778
Gm35745 2 26174761 to 26178580 3819 - lncRNA gene predicted gene, 35745
Gm13553 2 26186729 to 26191678 4949 - lincRNA gene predicted gene 13553
Lhx3 2 26200212 to 26208249 8037 - protein coding gene LIM homeobox protein 3
Cpgi11342 2 26201884 to 26203397 1513 CpG island CpG island 11342
Tssr23082 2 26204577 to 26204590 13 - TSS region transcription start site region 23082
Tssr23083 2 26204611 to 26204622 11 - TSS region transcription start site region 23083
Tssr23084 2 26204625 to 26204636 11 - TSS region transcription start site region 23084
Tssr436 2 26204644 to 26204648 4 - TSS region transcription start site region 436
Tssr23085 2 26204656 to 26204661 5 - TSS region transcription start site region 23085
Cpgi11343 2 26205209 to 26205449 240 CpG island CpG island 11343
Cpgi11344 2 26206070 to 26207102 1032 CpG island CpG island 11344
Tssr23086 2 26206535 to 26206580 45 - TSS region transcription start site region 23086
Tssr16779 2 26206675 to 26206686 11 + TSS region transcription start site region 16779
Gm27196 2 26206702 to 26209283 2581 + antisense lncRNA gene predicted gene 27196
Tssr23087 2 26208281 to 26208293 12 - TSS region transcription start site region 23087
Qsox2 2 26209124 to 26237399 28275 - protein coding gene quiescin Q6 sulfhydryl oxidase 2
Cpgi11345 2 26236675 to 26237666 991 CpG island CpG island 11345
Tssr23088 2 26237348 to 26237367 19 - TSS region transcription start site region 23088
Tssr23089 2 26237368 to 26237386 18 - TSS region transcription start site region 23089
Ccdc187 2 26243469 to 26294557 51088 - protein coding gene coiled-coil domain containing 187
Tssr16780 2 26267332 to 26267333 1 + TSS region transcription start site region 16780
Tssr16781 2 26278704 to 26278709 5 + TSS region transcription start site region 16781
Gm35807 2 26293958 to 26302044 8086 + lncRNA gene predicted gene, 35807
Tssr23090 2 26294511 to 26294515 4 - TSS region transcription start site region 23090
Tssr23091 2 26294525 to 26294534 9 - TSS region transcription start site region 23091
Tssr23092 2 26294550 to 26294561 11 - TSS region transcription start site region 23092
Tssr23093 2 26294579 to 26294588 9 - TSS region transcription start site region 23093
Tssr23094 2 26294598 to 26294625 27 - TSS region transcription start site region 23094
Tssr16782 2 26294706 to 26294723 17 + TSS region transcription start site region 16782
Tssr16783 2 26294726 to 26294740 14 + TSS region transcription start site region 16783
Tssr23095 2 26300157 to 26300190 33 - TSS region transcription start site region 23095
Tssr23096 2 26300191 to 26300206 15 - TSS region transcription start site region 23096
Cpgi11346 2 26315128 to 26316424 1296 CpG island CpG island 11346
Tssr16784 2 26315459 to 26315466 7 + TSS region transcription start site region 16784
Tssr16785 2 26315483 to 26315502 19 + TSS region transcription start site region 16785
Tssr16786 2 26315513 to 26315602 89 + TSS region transcription start site region 16786
Gpsm1 2 26315515 to 26348237 32722 + protein coding gene G-protein signalling modulator 1 (AGS3-like, C. elegans)
Tssr16787 2 26319741 to 26319757 16 + TSS region transcription start site region 16787
Tssr16788 2 26330426 to 26330441 15 + TSS region transcription start site region 16788
Tssr16789 2 26339425 to 26339451 26 + TSS region transcription start site region 16789
Tssr16790 2 26342282 to 26342295 13 + TSS region transcription start site region 16790
Dnlz 2 26348121 to 26352110 3989 - protein coding gene DNL-type zinc finger
Cpgi11347 2 26351325 to 26352970 1645 CpG island CpG island 11347
Tssr23097 2 26351987 to 26352053 66 - TSS region transcription start site region 23097
Tssr23098 2 26352067 to 26352115 48 - TSS region transcription start site region 23098
Card9 2 26352176 to 26360918 8742 - protein coding gene caspase recruitment domain family, member 9
Tssr23099 2 26352234 to 26352237 3 - TSS region transcription start site region 23099
Gm13562 2 26352645 to 26371952 19307 + unclassified non-coding RNA gene predicted gene 13562
Tssr23100 2 26356838 to 26356905 67 - TSS region transcription start site region 23100
Tssr23101 2 26360843 to 26360872 29 - TSS region transcription start site region 23101
Tssr23102 2 26360873 to 26360914 41 - TSS region transcription start site region 23102
Snapc4 2 26362765 to 26380653 17888 - protein coding gene small nuclear RNA activating complex, polypeptide 4
Cpgi11348 2 26380194 to 26380818 624 CpG island CpG island 11348
Tssr23103 2 26380600 to 26380654 54 - TSS region transcription start site region 23103
Tssr16791 2 26380696 to 26380735 39 + TSS region transcription start site region 16791
Gm13563 2 26381526 to 26389018 7492 + antisense lncRNA gene predicted gene 13563
Entr1 2 26382802 to 26389316 6514 - protein coding gene endosome associated trafficking regulator 1
9430022A06Rik 2 26383357 to 26385155 1798 unclassified gene RIKEN cDNA 9430022A06 gene
Cpgi11349 2 26388475 to 26389794 1319 CpG island CpG island 11349
Tssr23104 2 26389267 to 26389323 56 - TSS region transcription start site region 23104
Tssr16792 2 26389334 to 26389364 30 + TSS region transcription start site region 16792
Pmpca 2 26389348 to 26397121 7773 + protein coding gene peptidase (mitochondrial processing) alpha
Tssr16793 2 26389370 to 26389381 11 + TSS region transcription start site region 16793
Inpp5e 2 26396249 to 26409203 12954 - protein coding gene inositol polyphosphate-5-phosphatase E
Cpgi11350 2 26408554 to 26409598 1044 CpG island CpG island 11350
Tssr23105 2 26409100 to 26409133 33 - TSS region transcription start site region 23105
Tssr23106 2 26409161 to 26409209 48 - TSS region transcription start site region 23106
Tssr23107 2 26409213 to 26409236 23 - TSS region transcription start site region 23107
Sec16a 2 26409431 to 26445216 35785 - protein coding gene SEC16 homolog A, endoplasmic reticulum export factor
Tssr23108 2 26438635 to 26438640 5 - TSS region transcription start site region 23108
Tssr23109 2 26440968 to 26440971 3 - TSS region transcription start site region 23109