Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25841042-26202265

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sohlh1 2 25842995 to 25847248 4253 - protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 1
Tssr23050 2 25847296 to 25847307 11 - TSS region transcription start site region 23050
Tssr23051 2 25847324 to 25847339 15 - TSS region transcription start site region 23051
Cpgi11332 2 25863536 to 25864559 1023 CpG island CpG island 11332
Kcnt1 2 25863791 to 25918273 54482 + protein coding gene potassium channel, subfamily T, member 1
Cpgi11333 2 25877283 to 25878542 1259 CpG island CpG island 11333
Tssr16775 2 25877847 to 25877883 36 + TSS region transcription start site region 16775
Tssr16776 2 25877887 to 25877898 11 + TSS region transcription start site region 16776
Tssr16777 2 25889215 to 25889218 3 + TSS region transcription start site region 16777
6230426I18Rik 2 25923343 to 25924808 1465 unclassified gene RIKEN cDNA 6230426I18 gene
Camsap1 2 25926838 to 25983282 56444 - protein coding gene calmodulin regulated spectrin-associated protein 1
Tssr23052 2 25945826 to 25945832 6 - TSS region transcription start site region 23052
Tssr23053 2 25946080 to 25946091 11 - TSS region transcription start site region 23053
D2Mit318 2 25950374 to 25950574 200 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 318
Cpgi11334 2 25982157 to 25984141 1984 CpG island CpG island 11334
Tssr23054 2 25983130 to 25983154 24 - TSS region transcription start site region 23054
Tssr23055 2 25983177 to 25983234 57 - TSS region transcription start site region 23055
Tssr23056 2 25983236 to 25983290 54 - TSS region transcription start site region 23056
A230056K03Rik 2 25983675 to 25984627 952 unclassified gene RIKEN cDNA A230056K03 gene
Gm13542 2 25994547 to 25995183 636 - pseudogene predicted gene 13542
Ubac1 2 25998543 to 26021747 23204 - protein coding gene ubiquitin associated domain containing 1
Tssr23057 2 26005322 to 26005326 4 - TSS region transcription start site region 23057
Tssr23058 2 26013728 to 26013753 25 - TSS region transcription start site region 23058
Cpgi11335 2 26021042 to 26022265 1223 CpG island CpG island 11335
Tssr23059 2 26021547 to 26021558 11 - TSS region transcription start site region 23059
Tssr23060 2 26021560 to 26021613 53 - TSS region transcription start site region 23060
Tssr23061 2 26021679 to 26021779 100 - TSS region transcription start site region 23061
Cpgi11336 2 26040038 to 26040301 263 CpG island CpG island 11336
D2Mit521 2 26050274 to 26050396 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 521
Nacc2 2 26055535 to 26122811 67276 - protein coding gene nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
Gm13554 2 26059010 to 26060275 1265 + antisense lncRNA gene predicted gene 13554
Tssr23062 2 26062330 to 26062342 12 - TSS region transcription start site region 23062
Tssr23063 2 26072676 to 26072677 1 - TSS region transcription start site region 23063
Cpgi11337 2 26091272 to 26092223 951 CpG island CpG island 11337
Tssr23064 2 26091776 to 26091791 15 - TSS region transcription start site region 23064
Tssr23065 2 26091831 to 26091855 24 - TSS region transcription start site region 23065
Tssr23066 2 26091914 to 26091923 9 - TSS region transcription start site region 23066
Tssr23067 2 26091933 to 26091959 26 - TSS region transcription start site region 23067
Tssr23068 2 26091961 to 26091988 27 - TSS region transcription start site region 23068
Tssr23069 2 26091992 to 26092003 11 - TSS region transcription start site region 23069
Tssr23070 2 26092018 to 26092033 15 - TSS region transcription start site region 23070
Tssr23071 2 26092048 to 26092059 11 - TSS region transcription start site region 23071
Tssr23072 2 26092149 to 26092157 8 - TSS region transcription start site region 23072
Tssr23073 2 26097251 to 26097259 8 - TSS region transcription start site region 23073
Cpgi11338 2 26121804 to 26123438 1634 CpG island CpG island 11338
Tssr23074 2 26122738 to 26122765 27 - TSS region transcription start site region 23074
Tssr23075 2 26122769 to 26122838 69 - TSS region transcription start site region 23075
Cpgi11339 2 26133088 to 26133382 294 CpG island CpG island 11339
Tmem250-ps 2 26136807 to 26140506 3699 - pseudogene transmembrane protein 250, pseudogene
Tssr23076 2 26138276 to 26138278 2 - TSS region transcription start site region 23076
Cpgi11340 2 26138470 to 26139077 607 CpG island CpG island 11340
1810012K08Rik 2 26138546 to 26139543 997 + lincRNA gene RIKEN cDNA 1810012K08 gene
Tssr23077 2 26138894 to 26138916 22 - TSS region transcription start site region 23077
Cpgi11341 2 26139455 to 26141117 1662 CpG island CpG island 11341
Tssr23078 2 26140289 to 26140344 55 - TSS region transcription start site region 23078
Tssr23079 2 26140348 to 26140389 41 - TSS region transcription start site region 23079
Tssr23080 2 26140468 to 26140530 62 - TSS region transcription start site region 23080
Tssr23081 2 26140532 to 26140554 22 - TSS region transcription start site region 23081
Tssr16778 2 26154311 to 26154317 6 + TSS region transcription start site region 16778
Gm35745 2 26174761 to 26178580 3819 - lncRNA gene predicted gene, 35745
Gm13553 2 26186729 to 26191678 4949 - lincRNA gene predicted gene 13553
Lhx3 2 26200212 to 26208249 8037 - protein coding gene LIM homeobox protein 3
Cpgi11342 2 26201884 to 26203397 1513 CpG island CpG island 11342