Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25704215-26074218

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A230005M16Rik 2 25705850 to 25709716 3866 - antisense lncRNA gene RIKEN cDNA A230005M16 gene
Cpgi11331 2 25706362 to 25707555 1193 CpG island CpG island 11331
Tssr16762 2 25706721 to 25706730 9 + TSS region transcription start site region 16762
Tssr16763 2 25706743 to 25706794 51 + TSS region transcription start site region 16763
Tssr16764 2 25706795 to 25706824 29 + TSS region transcription start site region 16764
Tssr16765 2 25706826 to 25706913 87 + TSS region transcription start site region 16765
Bmyc 2 25706879 to 25707721 842 + protein coding gene brain expressed myelocytomatosis oncogene
Tssr16766 2 25706932 to 25706941 9 + TSS region transcription start site region 16766
Tssr16767 2 25706977 to 25706999 22 + TSS region transcription start site region 16767
Tssr16768 2 25707121 to 25707124 3 + TSS region transcription start site region 16768
Tssr23045 2 25712772 to 25712780 8 - TSS region transcription start site region 23045
Tssr16769 2 25737005 to 25737008 3 + TSS region transcription start site region 16769
Obp2b 2 25737009 to 25740097 3088 + protein coding gene odorant binding protein 2B
Tssr16770 2 25765531 to 25765535 4 + TSS region transcription start site region 16770
Lcn3 2 25765569 to 25768099 2530 + protein coding gene lipocalin 3
Tssr16771 2 25777015 to 25777021 6 + TSS region transcription start site region 16771
Lcn11 2 25777017 to 25780279 3262 + protein coding gene lipocalin 11
Gm13538 2 25783940 to 25794650 10710 - unclassified non-coding RNA gene predicted gene 13538
Gm13539 2 25784617 to 25787022 2405 + lncRNA gene predicted gene 13539
Tssr23046 2 25785674 to 25785693 19 - TSS region transcription start site region 23046
Glt6d1 2 25793859 to 25815848 21989 - protein coding gene glycosyltransferase 6 domain containing 1
Gm35689 2 25814503 to 25815771 1268 + lncRNA gene predicted gene, 35689
Tssr23047 2 25815839 to 25815858 19 - TSS region transcription start site region 23047
Tssr23048 2 25815862 to 25815871 9 - TSS region transcription start site region 23048
Tssr23049 2 25822112 to 25822116 4 - TSS region transcription start site region 23049
Tssr16772 2 25823144 to 25823160 16 + TSS region transcription start site region 16772
Lcn9 2 25823153 to 25825537 2384 + protein coding gene lipocalin 9
Tssr16773 2 25823465 to 25823513 48 + TSS region transcription start site region 16773
Tssr16774 2 25823685 to 25823703 18 + TSS region transcription start site region 16774
Sohlh1 2 25842995 to 25847248 4253 - protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 1
Tssr23050 2 25847296 to 25847307 11 - TSS region transcription start site region 23050
Tssr23051 2 25847324 to 25847339 15 - TSS region transcription start site region 23051
Cpgi11332 2 25863536 to 25864559 1023 CpG island CpG island 11332
Kcnt1 2 25863791 to 25918273 54482 + protein coding gene potassium channel, subfamily T, member 1
Cpgi11333 2 25877283 to 25878542 1259 CpG island CpG island 11333
Tssr16775 2 25877847 to 25877883 36 + TSS region transcription start site region 16775
Tssr16776 2 25877887 to 25877898 11 + TSS region transcription start site region 16776
Tssr16777 2 25889215 to 25889218 3 + TSS region transcription start site region 16777
6230426I18Rik 2 25923343 to 25924808 1465 unclassified gene RIKEN cDNA 6230426I18 gene
Camsap1 2 25926838 to 25983282 56444 - protein coding gene calmodulin regulated spectrin-associated protein 1
Tssr23052 2 25945826 to 25945832 6 - TSS region transcription start site region 23052
Tssr23053 2 25946080 to 25946091 11 - TSS region transcription start site region 23053
D2Mit318 2 25950374 to 25950574 200 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 318
Cpgi11334 2 25982157 to 25984141 1984 CpG island CpG island 11334
Tssr23054 2 25983130 to 25983154 24 - TSS region transcription start site region 23054
Tssr23055 2 25983177 to 25983234 57 - TSS region transcription start site region 23055
Tssr23056 2 25983236 to 25983290 54 - TSS region transcription start site region 23056
A230056K03Rik 2 25983675 to 25984627 952 unclassified gene RIKEN cDNA A230056K03 gene
Gm13542 2 25994547 to 25995183 636 - pseudogene predicted gene 13542
Ubac1 2 25998543 to 26021747 23204 - protein coding gene ubiquitin associated domain containing 1
Tssr23057 2 26005322 to 26005326 4 - TSS region transcription start site region 23057
Tssr23058 2 26013728 to 26013753 25 - TSS region transcription start site region 23058
Cpgi11335 2 26021042 to 26022265 1223 CpG island CpG island 11335
Tssr23059 2 26021547 to 26021558 11 - TSS region transcription start site region 23059
Tssr23060 2 26021560 to 26021613 53 - TSS region transcription start site region 23060
Tssr23061 2 26021679 to 26021779 100 - TSS region transcription start site region 23061
Cpgi11336 2 26040038 to 26040301 263 CpG island CpG island 11336
D2Mit521 2 26050274 to 26050396 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 521
Nacc2 2 26055535 to 26122811 67276 - protein coding gene nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
Gm13554 2 26059010 to 26060275 1265 + antisense lncRNA gene predicted gene 13554
Tssr23062 2 26062330 to 26062342 12 - TSS region transcription start site region 23062
Tssr23063 2 26072676 to 26072677 1 - TSS region transcription start site region 23063