Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25520274-26580396

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280 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Traf2 2 25517982 to 25546940 28958 - protein coding gene TNF receptor-associated factor 2
Tssr23019 2 25535116 to 25535121 5 - TSS region transcription start site region 23019
Tssr16739 2 25543426 to 25543439 13 + TSS region transcription start site region 16739
Gm13433 2 25543479 to 25543718 239 + pseudogene predicted gene 13433
Cpgi11323 2 25546372 to 25547284 912 CpG island CpG island 11323
Tssr23020 2 25546872 to 25546915 43 - TSS region transcription start site region 23020
Tssr23021 2 25546961 to 25546975 14 - TSS region transcription start site region 23021
Gm35476 2 25547922 to 25557811 9889 - lncRNA gene predicted gene, 35476
Gm13432 2 25554309 to 25554549 240 - pseudogene predicted gene 13432
Cpgi11324 2 25557258 to 25558522 1264 CpG island CpG island 11324
Tssr16740 2 25557846 to 25557851 5 + TSS region transcription start site region 16740
Edf1 2 25557847 to 25562082 4235 + protein coding gene endothelial differentiation-related factor 1
Tssr16741 2 25557861 to 25557923 62 + TSS region transcription start site region 16741
Mamdc4 2 25563112 to 25572158 9046 - protein coding gene MAM domain containing 4
Tssr23022 2 25571301 to 25571321 20 - TSS region transcription start site region 23022
Tssr434 2 25571371 to 25571384 13 - TSS region transcription start site region 434
Phpt1 2 25573431 to 25574871 1440 - protein coding gene phosphohistidine phosphatase 1
Cpgi11325 2 25574467 to 25575093 626 CpG island CpG island 11325
Tssr23023 2 25574575 to 25574632 57 - TSS region transcription start site region 23023
Tssr23024 2 25574845 to 25574878 33 - TSS region transcription start site region 23024
Tssr23025 2 25574890 to 25574897 7 - TSS region transcription start site region 23025
Tssr23026 2 25574901 to 25574921 20 - TSS region transcription start site region 23026
Cpgi11326 2 25575397 to 25575679 282 CpG island CpG island 11326
Ajm1 2 25575416 to 25580099 4683 - protein coding gene apical junction component 1
Gm26702 2 25575431 to 25580099 4668 + lincRNA gene predicted gene, 26702
Cpgi11327 2 25576892 to 25580196 3304 CpG island CpG island 11327
Tssr23027 2 25580215 to 25580230 15 - TSS region transcription start site region 23027
Tssr23028 2 25580239 to 25580254 15 - TSS region transcription start site region 23028
Tssr23029 2 25581616 to 25581625 9 - TSS region transcription start site region 23029
Tssr23030 2 25581642 to 25581656 14 - TSS region transcription start site region 23030
Tssr23031 2 25581692 to 25581758 66 - TSS region transcription start site region 23031
Rabl6 2 25583018 to 25608488 25470 - protein coding gene RAB, member RAS oncogene family-like 6
Tssr23032 2 25587577 to 25587607 30 - TSS region transcription start site region 23032
Cpgi11328 2 25607729 to 25608770 1041 CpG island CpG island 11328
Tssr16742 2 25607853 to 25607880 27 + TSS region transcription start site region 16742
Tssr23033 2 25607929 to 25607932 3 - TSS region transcription start site region 23033
Tssr23034 2 25608421 to 25608432 11 - TSS region transcription start site region 23034
Tssr23035 2 25608447 to 25608486 39 - TSS region transcription start site region 23035
Tssr16743 2 25608524 to 25608551 27 + TSS region transcription start site region 16743
Ccdc183 2 25608635 to 25617678 9043 - protein coding gene coiled-coil domain containing 183
Fcnaos 2 25609350 to 25631761 22411 + antisense lncRNA gene ficolin A, opposite strand
Cpgi11329 2 25616035 to 25616848 813 CpG island CpG island 11329
Tssr23036 2 25617636 to 25617658 22 - TSS region transcription start site region 23036
Tssr23037 2 25617672 to 25617689 17 - TSS region transcription start site region 23037
Tssr435 2 25617779 to 25617784 5 + TSS region transcription start site region 435
Tssr16744 2 25617792 to 25617800 8 + TSS region transcription start site region 16744
Tssr16745 2 25617803 to 25617815 12 + TSS region transcription start site region 16745
Tmem141 2 25620067 to 25622005 1938 - protein coding gene transmembrane protein 141
Cpgi11330 2 25621785 to 25622193 408 CpG island CpG island 11330
Tssr23038 2 25621893 to 25621915 22 - TSS region transcription start site region 23038
Tssr23039 2 25621923 to 25622031 108 - TSS region transcription start site region 23039
Fcna 2 25624666 to 25628030 3364 - protein coding gene ficolin A
Tssr23040 2 25627892 to 25627908 16 - TSS region transcription start site region 23040
Tssr23041 2 25627913 to 25627926 13 - TSS region transcription start site region 23041
Tssr23042 2 25627933 to 25627952 19 - TSS region transcription start site region 23042
Tssr23043 2 25627960 to 25627974 14 - TSS region transcription start site region 23043
Gm35630 2 25635518 to 25640260 4742 + lncRNA gene predicted gene, 35630
Lcn15 2 25644144 to 25648801 4657 + protein coding gene lipocalin 15
Tssr16746 2 25652994 to 25653019 25 + TSS region transcription start site region 16746
Tssr16747 2 25653111 to 25653130 19 + TSS region transcription start site region 16747
Lcn8 2 25653120 to 25656217 3097 + protein coding gene lipocalin 8
Tssr16748 2 25656651 to 25656653 2 + TSS region transcription start site region 16748
Tssr16749 2 25657944 to 25657963 19 + TSS region transcription start site region 16749
Lcn5 2 25657952 to 25661977 4025 + protein coding gene lipocalin 5
Tssr16750 2 25657980 to 25657985 5 + TSS region transcription start site region 16750
Tssr16751 2 25676785 to 25676797 12 + TSS region transcription start site region 16751
Lcn6 2 25676786 to 25681608 4822 + protein coding gene lipocalin 6
Tssr16752 2 25682725 to 25682746 21 + TSS region transcription start site region 16752
Lcn10 2 25682726 to 25686081 3355 + protein coding gene lipocalin 10
Tssr16753 2 25682752 to 25682772 20 + TSS region transcription start site region 16753
Tssr16754 2 25682784 to 25682794 10 + TSS region transcription start site region 16754
Tssr23044 2 25684197 to 25684204 7 - TSS region transcription start site region 23044
Tssr16755 2 25700039 to 25700042 3 + TSS region transcription start site region 16755
Obp2a 2 25700043 to 25703326 3283 + protein coding gene odorant binding protein 2A
Tssr16756 2 25701288 to 25701293 5 + TSS region transcription start site region 16756
Tssr16757 2 25701632 to 25701655 23 + TSS region transcription start site region 16757
Tssr16758 2 25702029 to 25702036 7 + TSS region transcription start site region 16758
Tssr16759 2 25702402 to 25702412 10 + TSS region transcription start site region 16759
Tssr16760 2 25702481 to 25702506 25 + TSS region transcription start site region 16760
Tssr16761 2 25702540 to 25702547 7 + TSS region transcription start site region 16761
A230005M16Rik 2 25705850 to 25709716 3866 - antisense lncRNA gene RIKEN cDNA A230005M16 gene
Cpgi11331 2 25706362 to 25707555 1193 CpG island CpG island 11331
Tssr16762 2 25706721 to 25706730 9 + TSS region transcription start site region 16762
Tssr16763 2 25706743 to 25706794 51 + TSS region transcription start site region 16763
Tssr16764 2 25706795 to 25706824 29 + TSS region transcription start site region 16764
Tssr16765 2 25706826 to 25706913 87 + TSS region transcription start site region 16765
Bmyc 2 25706879 to 25707721 842 + protein coding gene brain expressed myelocytomatosis oncogene
Tssr16766 2 25706932 to 25706941 9 + TSS region transcription start site region 16766
Tssr16767 2 25706977 to 25706999 22 + TSS region transcription start site region 16767
Tssr16768 2 25707121 to 25707124 3 + TSS region transcription start site region 16768
Tssr23045 2 25712772 to 25712780 8 - TSS region transcription start site region 23045
Tssr16769 2 25737005 to 25737008 3 + TSS region transcription start site region 16769
Obp2b 2 25737009 to 25740097 3088 + protein coding gene odorant binding protein 2B
Tssr16770 2 25765531 to 25765535 4 + TSS region transcription start site region 16770
Lcn3 2 25765569 to 25768099 2530 + protein coding gene lipocalin 3
Tssr16771 2 25777015 to 25777021 6 + TSS region transcription start site region 16771
Lcn11 2 25777017 to 25780279 3262 + protein coding gene lipocalin 11
Gm13538 2 25783940 to 25794650 10710 - unclassified non-coding RNA gene predicted gene 13538
Gm13539 2 25784617 to 25787022 2405 + lncRNA gene predicted gene 13539
Tssr23046 2 25785674 to 25785693 19 - TSS region transcription start site region 23046
Glt6d1 2 25793859 to 25815848 21989 - protein coding gene glycosyltransferase 6 domain containing 1
Gm35689 2 25814503 to 25815771 1268 + lncRNA gene predicted gene, 35689
Tssr23047 2 25815839 to 25815858 19 - TSS region transcription start site region 23047
Tssr23048 2 25815862 to 25815871 9 - TSS region transcription start site region 23048
Tssr23049 2 25822112 to 25822116 4 - TSS region transcription start site region 23049
Tssr16772 2 25823144 to 25823160 16 + TSS region transcription start site region 16772
Lcn9 2 25823153 to 25825537 2384 + protein coding gene lipocalin 9
Tssr16773 2 25823465 to 25823513 48 + TSS region transcription start site region 16773
Tssr16774 2 25823685 to 25823703 18 + TSS region transcription start site region 16774
Sohlh1 2 25842995 to 25847248 4253 - protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 1
Tssr23050 2 25847296 to 25847307 11 - TSS region transcription start site region 23050
Tssr23051 2 25847324 to 25847339 15 - TSS region transcription start site region 23051
Cpgi11332 2 25863536 to 25864559 1023 CpG island CpG island 11332
Kcnt1 2 25863791 to 25918273 54482 + protein coding gene potassium channel, subfamily T, member 1
Cpgi11333 2 25877283 to 25878542 1259 CpG island CpG island 11333
Tssr16775 2 25877847 to 25877883 36 + TSS region transcription start site region 16775
Tssr16776 2 25877887 to 25877898 11 + TSS region transcription start site region 16776
Tssr16777 2 25889215 to 25889218 3 + TSS region transcription start site region 16777
6230426I18Rik 2 25923343 to 25924808 1465 unclassified gene RIKEN cDNA 6230426I18 gene
Camsap1 2 25926838 to 25983282 56444 - protein coding gene calmodulin regulated spectrin-associated protein 1
Tssr23052 2 25945826 to 25945832 6 - TSS region transcription start site region 23052
Tssr23053 2 25946080 to 25946091 11 - TSS region transcription start site region 23053
D2Mit318 2 25950374 to 25950574 200 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 318
Cpgi11334 2 25982157 to 25984141 1984 CpG island CpG island 11334
Tssr23054 2 25983130 to 25983154 24 - TSS region transcription start site region 23054
Tssr23055 2 25983177 to 25983234 57 - TSS region transcription start site region 23055
Tssr23056 2 25983236 to 25983290 54 - TSS region transcription start site region 23056
A230056K03Rik 2 25983675 to 25984627 952 unclassified gene RIKEN cDNA A230056K03 gene
Gm13542 2 25994547 to 25995183 636 - pseudogene predicted gene 13542
Ubac1 2 25998543 to 26021747 23204 - protein coding gene ubiquitin associated domain containing 1
Tssr23057 2 26005322 to 26005326 4 - TSS region transcription start site region 23057
Tssr23058 2 26013728 to 26013753 25 - TSS region transcription start site region 23058
Cpgi11335 2 26021042 to 26022265 1223 CpG island CpG island 11335
Tssr23059 2 26021547 to 26021558 11 - TSS region transcription start site region 23059
Tssr23060 2 26021560 to 26021613 53 - TSS region transcription start site region 23060
Tssr23061 2 26021679 to 26021779 100 - TSS region transcription start site region 23061
Cpgi11336 2 26040038 to 26040301 263 CpG island CpG island 11336
D2Mit521 2 26050274 to 26050396 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 521
Nacc2 2 26055535 to 26122811 67276 - protein coding gene nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
Gm13554 2 26059010 to 26060275 1265 + antisense lncRNA gene predicted gene 13554
Tssr23062 2 26062330 to 26062342 12 - TSS region transcription start site region 23062
Tssr23063 2 26072676 to 26072677 1 - TSS region transcription start site region 23063
Cpgi11337 2 26091272 to 26092223 951 CpG island CpG island 11337
Tssr23064 2 26091776 to 26091791 15 - TSS region transcription start site region 23064
Tssr23065 2 26091831 to 26091855 24 - TSS region transcription start site region 23065
Tssr23066 2 26091914 to 26091923 9 - TSS region transcription start site region 23066
Tssr23067 2 26091933 to 26091959 26 - TSS region transcription start site region 23067
Tssr23068 2 26091961 to 26091988 27 - TSS region transcription start site region 23068
Tssr23069 2 26091992 to 26092003 11 - TSS region transcription start site region 23069
Tssr23070 2 26092018 to 26092033 15 - TSS region transcription start site region 23070
Tssr23071 2 26092048 to 26092059 11 - TSS region transcription start site region 23071
Tssr23072 2 26092149 to 26092157 8 - TSS region transcription start site region 23072
Tssr23073 2 26097251 to 26097259 8 - TSS region transcription start site region 23073
Cpgi11338 2 26121804 to 26123438 1634 CpG island CpG island 11338
Tssr23074 2 26122738 to 26122765 27 - TSS region transcription start site region 23074
Tssr23075 2 26122769 to 26122838 69 - TSS region transcription start site region 23075
Cpgi11339 2 26133088 to 26133382 294 CpG island CpG island 11339
Tmem250-ps 2 26136807 to 26140506 3699 - pseudogene transmembrane protein 250, pseudogene
Tssr23076 2 26138276 to 26138278 2 - TSS region transcription start site region 23076
Cpgi11340 2 26138470 to 26139077 607 CpG island CpG island 11340
1810012K08Rik 2 26138546 to 26139543 997 + lincRNA gene RIKEN cDNA 1810012K08 gene
Tssr23077 2 26138894 to 26138916 22 - TSS region transcription start site region 23077
Cpgi11341 2 26139455 to 26141117 1662 CpG island CpG island 11341
Tssr23078 2 26140289 to 26140344 55 - TSS region transcription start site region 23078
Tssr23079 2 26140348 to 26140389 41 - TSS region transcription start site region 23079
Tssr23080 2 26140468 to 26140530 62 - TSS region transcription start site region 23080
Tssr23081 2 26140532 to 26140554 22 - TSS region transcription start site region 23081
Tssr16778 2 26154311 to 26154317 6 + TSS region transcription start site region 16778
Gm35745 2 26174761 to 26178580 3819 - lncRNA gene predicted gene, 35745
Gm13553 2 26186729 to 26191678 4949 - lincRNA gene predicted gene 13553
Lhx3 2 26200212 to 26208249 8037 - protein coding gene LIM homeobox protein 3
Cpgi11342 2 26201884 to 26203397 1513 CpG island CpG island 11342
Tssr23082 2 26204577 to 26204590 13 - TSS region transcription start site region 23082
Tssr23083 2 26204611 to 26204622 11 - TSS region transcription start site region 23083
Tssr23084 2 26204625 to 26204636 11 - TSS region transcription start site region 23084
Tssr436 2 26204644 to 26204648 4 - TSS region transcription start site region 436
Tssr23085 2 26204656 to 26204661 5 - TSS region transcription start site region 23085
Cpgi11343 2 26205209 to 26205449 240 CpG island CpG island 11343
Cpgi11344 2 26206070 to 26207102 1032 CpG island CpG island 11344
Tssr23086 2 26206535 to 26206580 45 - TSS region transcription start site region 23086
Tssr16779 2 26206675 to 26206686 11 + TSS region transcription start site region 16779
Gm27196 2 26206702 to 26209283 2581 + antisense lncRNA gene predicted gene 27196
Tssr23087 2 26208281 to 26208293 12 - TSS region transcription start site region 23087
Qsox2 2 26209124 to 26237399 28275 - protein coding gene quiescin Q6 sulfhydryl oxidase 2
Cpgi11345 2 26236675 to 26237666 991 CpG island CpG island 11345
Tssr23088 2 26237348 to 26237367 19 - TSS region transcription start site region 23088
Tssr23089 2 26237368 to 26237386 18 - TSS region transcription start site region 23089
Ccdc187 2 26243469 to 26294557 51088 - protein coding gene coiled-coil domain containing 187
Tssr16780 2 26267332 to 26267333 1 + TSS region transcription start site region 16780
Tssr16781 2 26278704 to 26278709 5 + TSS region transcription start site region 16781
Gm35807 2 26293958 to 26302044 8086 + lncRNA gene predicted gene, 35807
Tssr23090 2 26294511 to 26294515 4 - TSS region transcription start site region 23090
Tssr23091 2 26294525 to 26294534 9 - TSS region transcription start site region 23091
Tssr23092 2 26294550 to 26294561 11 - TSS region transcription start site region 23092
Tssr23093 2 26294579 to 26294588 9 - TSS region transcription start site region 23093
Tssr23094 2 26294598 to 26294625 27 - TSS region transcription start site region 23094
Tssr16782 2 26294706 to 26294723 17 + TSS region transcription start site region 16782
Tssr16783 2 26294726 to 26294740 14 + TSS region transcription start site region 16783
Tssr23095 2 26300157 to 26300190 33 - TSS region transcription start site region 23095
Tssr23096 2 26300191 to 26300206 15 - TSS region transcription start site region 23096