Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25428635-25797678

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11318 2 25428172 to 25429692 1520 CpG island CpG island 11318
Tssr16718 2 25428644 to 25428686 42 + TSS region transcription start site region 16718
Tssr16719 2 25428699 to 25428715 16 + TSS region transcription start site region 16719
Abca2 2 25428703 to 25448540 19837 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 2
Tssr16720 2 25428717 to 25428730 13 + TSS region transcription start site region 16720
Tssr431 2 25429386 to 25429396 10 + TSS region transcription start site region 431
Tssr16721 2 25431238 to 25431254 16 + TSS region transcription start site region 16721
Cpgi11319 2 25433056 to 25433371 315 CpG island CpG island 11319
Cpgi11320 2 25441267 to 25441464 197 CpG island CpG island 11320
Mir3087 2 25442779 to 25442834 55 + miRNA gene microRNA 3087
Paxx 2 25455141 to 25461094 5953 - protein coding gene non-homologous end joining factor
Tssr16722 2 25456830 to 25456850 20 + TSS region transcription start site region 16722
Clic3 2 25456843 to 25458772 1929 + protein coding gene chloride intracellular channel 3
Tssr16723 2 25457632 to 25457670 38 + TSS region transcription start site region 16723
Cpgi11321 2 25460550 to 25461304 754 CpG island CpG island 11321
Tssr22977 2 25460906 to 25460931 25 - TSS region transcription start site region 22977
Tssr22978 2 25460933 to 25460959 26 - TSS region transcription start site region 22978
Tssr22979 2 25460970 to 25460983 13 - TSS region transcription start site region 22979
Tssr22980 2 25460993 to 25461004 11 - TSS region transcription start site region 22980
Tssr22981 2 25461021 to 25461040 19 - TSS region transcription start site region 22981
Tssr22982 2 25461069 to 25461080 11 - TSS region transcription start site region 22982
Tssr22983 2 25461107 to 25461112 5 - TSS region transcription start site region 22983
Tssr22984 2 25461118 to 25461129 11 - TSS region transcription start site region 22984
Tssr16724 2 25461201 to 25461221 20 + TSS region transcription start site region 16724
Tssr22985 2 25465882 to 25465894 12 - TSS region transcription start site region 22985
Ptgds 2 25466709 to 25470046 3337 - protein coding gene prostaglandin D2 synthase (brain)
Tssr22986 2 25466805 to 25466820 15 - TSS region transcription start site region 22986
Tssr16725 2 25467309 to 25467317 8 + TSS region transcription start site region 16725
Tssr16726 2 25467826 to 25467835 9 + TSS region transcription start site region 16726
Tssr22987 2 25467838 to 25467845 7 - TSS region transcription start site region 22987
Tssr16727 2 25467875 to 25467897 22 + TSS region transcription start site region 16727
Tssr22988 2 25467908 to 25467927 19 - TSS region transcription start site region 22988
Tssr22989 2 25468089 to 25468110 21 - TSS region transcription start site region 22989
Tssr16728 2 25468098 to 25468113 15 + TSS region transcription start site region 16728
Tssr16729 2 25468121 to 25468140 19 + TSS region transcription start site region 16729
Tssr22990 2 25468132 to 25468145 13 - TSS region transcription start site region 22990
Tssr22991 2 25468146 to 25468162 16 - TSS region transcription start site region 22991
Tssr16730 2 25468830 to 25468878 48 + TSS region transcription start site region 16730
Tssr22992 2 25468856 to 25468868 12 - TSS region transcription start site region 22992
Tssr22993 2 25468881 to 25468896 15 - TSS region transcription start site region 22993
Tssr16731 2 25468985 to 25468993 8 + TSS region transcription start site region 16731
Tssr16732 2 25469004 to 25469014 10 + TSS region transcription start site region 16732
Tssr22994 2 25469025 to 25469044 19 - TSS region transcription start site region 22994
Tssr22995 2 25469093 to 25469106 13 - TSS region transcription start site region 22995
Tssr22996 2 25469111 to 25469122 11 - TSS region transcription start site region 22996
Tssr22997 2 25469123 to 25469193 70 - TSS region transcription start site region 22997
Tssr22998 2 25469742 to 25469758 16 - TSS region transcription start site region 22998
Tssr432 2 25470014 to 25470019 5 - TSS region transcription start site region 432
Tssr22999 2 25470031 to 25470094 63 - TSS region transcription start site region 22999
Tssr23000 2 25470096 to 25470110 14 - TSS region transcription start site region 23000
Tssr23001 2 25470111 to 25470112 1 - TSS region transcription start site region 23001
Tssr23002 2 25470417 to 25470456 39 - TSS region transcription start site region 23002
Gm35287 2 25475304 to 25478556 3252 - lncRNA gene predicted gene, 35287
Tssr23003 2 25478060 to 25478072 12 - TSS region transcription start site region 23003
Tssr23004 2 25478075 to 25478094 19 - TSS region transcription start site region 23004
Tssr23005 2 25478095 to 25478115 20 - TSS region transcription start site region 23005
Tssr23006 2 25478350 to 25478356 6 - TSS region transcription start site region 23006
Lcn12 2 25490845 to 25493911 3066 - protein coding gene lipocalin 12
Tssr23007 2 25493434 to 25493439 5 - TSS region transcription start site region 23007
Tssr23008 2 25493443 to 25493464 21 - TSS region transcription start site region 23008
Tssr23009 2 25493466 to 25493479 13 - TSS region transcription start site region 23009
Tssr23010 2 25493882 to 25493889 7 - TSS region transcription start site region 23010
Tssr23011 2 25493894 to 25493904 10 - TSS region transcription start site region 23011
Tssr23012 2 25493905 to 25493960 55 - TSS region transcription start site region 23012
Tssr23013 2 25493968 to 25493972 4 - TSS region transcription start site region 23013
C8g 2 25498651 to 25501719 3068 - protein coding gene complement component 8, gamma polypeptide
Tssr433 2 25500141 to 25500147 6 - TSS region transcription start site region 433
Tssr23014 2 25500237 to 25500277 40 - TSS region transcription start site region 23014
Tssr23015 2 25500279 to 25500290 11 - TSS region transcription start site region 23015
Cpgi11322 2 25500649 to 25501197 548 CpG island CpG island 11322
Tssr23016 2 25500664 to 25500692 28 - TSS region transcription start site region 23016
Tssr16733 2 25500764 to 25500769 5 + TSS region transcription start site region 16733
Fbxw5 2 25500767 to 25505471 4704 + protein coding gene F-box and WD-40 domain protein 5
Tssr16734 2 25500772 to 25500783 11 + TSS region transcription start site region 16734
Tssr16735 2 25500789 to 25500864 75 + TSS region transcription start site region 16735
Tssr23017 2 25501717 to 25501724 7 - TSS region transcription start site region 23017
Tssr23018 2 25501743 to 25501759 16 - TSS region transcription start site region 23018
Tssr16736 2 25501819 to 25501841 22 + TSS region transcription start site region 16736
Tssr16737 2 25501843 to 25501850 7 + TSS region transcription start site region 16737
Tssr16738 2 25501860 to 25501874 14 + TSS region transcription start site region 16738
Traf2 2 25517982 to 25546940 28958 - protein coding gene TNF receptor-associated factor 2
Tssr23019 2 25535116 to 25535121 5 - TSS region transcription start site region 23019
Tssr16739 2 25543426 to 25543439 13 + TSS region transcription start site region 16739
Gm13433 2 25543479 to 25543718 239 + pseudogene predicted gene 13433
Cpgi11323 2 25546372 to 25547284 912 CpG island CpG island 11323
Tssr23020 2 25546872 to 25546915 43 - TSS region transcription start site region 23020
Tssr23021 2 25546961 to 25546975 14 - TSS region transcription start site region 23021
Gm35476 2 25547922 to 25557811 9889 - lncRNA gene predicted gene, 35476
Gm13432 2 25554309 to 25554549 240 - pseudogene predicted gene 13432
Cpgi11324 2 25557258 to 25558522 1264 CpG island CpG island 11324
Tssr16740 2 25557846 to 25557851 5 + TSS region transcription start site region 16740
Edf1 2 25557847 to 25562082 4235 + protein coding gene endothelial differentiation-related factor 1
Tssr16741 2 25557861 to 25557923 62 + TSS region transcription start site region 16741
Mamdc4 2 25563112 to 25572158 9046 - protein coding gene MAM domain containing 4
Tssr23022 2 25571301 to 25571321 20 - TSS region transcription start site region 23022
Tssr434 2 25571371 to 25571384 13 - TSS region transcription start site region 434
Phpt1 2 25573431 to 25574871 1440 - protein coding gene phosphohistidine phosphatase 1
Cpgi11325 2 25574467 to 25575093 626 CpG island CpG island 11325
Tssr23023 2 25574575 to 25574632 57 - TSS region transcription start site region 23023
Tssr23024 2 25574845 to 25574878 33 - TSS region transcription start site region 23024
Tssr23025 2 25574890 to 25574897 7 - TSS region transcription start site region 23025
Tssr23026 2 25574901 to 25574921 20 - TSS region transcription start site region 23026
Cpgi11326 2 25575397 to 25575679 282 CpG island CpG island 11326
Ajm1 2 25575416 to 25580099 4683 - protein coding gene apical junction component 1
Gm26702 2 25575431 to 25580099 4668 + lincRNA gene predicted gene, 26702
Cpgi11327 2 25576892 to 25580196 3304 CpG island CpG island 11327
Tssr23027 2 25580215 to 25580230 15 - TSS region transcription start site region 23027
Tssr23028 2 25580239 to 25580254 15 - TSS region transcription start site region 23028
Tssr23029 2 25581616 to 25581625 9 - TSS region transcription start site region 23029
Tssr23030 2 25581642 to 25581656 14 - TSS region transcription start site region 23030
Tssr23031 2 25581692 to 25581758 66 - TSS region transcription start site region 23031
Rabl6 2 25583018 to 25608488 25470 - protein coding gene RAB, member RAS oncogene family-like 6
Tssr23032 2 25587577 to 25587607 30 - TSS region transcription start site region 23032
Cpgi11328 2 25607729 to 25608770 1041 CpG island CpG island 11328
Tssr16742 2 25607853 to 25607880 27 + TSS region transcription start site region 16742
Tssr23033 2 25607929 to 25607932 3 - TSS region transcription start site region 23033
Tssr23034 2 25608421 to 25608432 11 - TSS region transcription start site region 23034
Tssr23035 2 25608447 to 25608486 39 - TSS region transcription start site region 23035
Tssr16743 2 25608524 to 25608551 27 + TSS region transcription start site region 16743
Ccdc183 2 25608635 to 25617678 9043 - protein coding gene coiled-coil domain containing 183
Fcnaos 2 25609350 to 25631761 22411 + antisense lncRNA gene ficolin A, opposite strand
Cpgi11329 2 25616035 to 25616848 813 CpG island CpG island 11329
Tssr23036 2 25617636 to 25617658 22 - TSS region transcription start site region 23036
Tssr23037 2 25617672 to 25617689 17 - TSS region transcription start site region 23037
Tssr435 2 25617779 to 25617784 5 + TSS region transcription start site region 435
Tssr16744 2 25617792 to 25617800 8 + TSS region transcription start site region 16744
Tssr16745 2 25617803 to 25617815 12 + TSS region transcription start site region 16745
Tmem141 2 25620067 to 25622005 1938 - protein coding gene transmembrane protein 141
Cpgi11330 2 25621785 to 25622193 408 CpG island CpG island 11330
Tssr23038 2 25621893 to 25621915 22 - TSS region transcription start site region 23038
Tssr23039 2 25621923 to 25622031 108 - TSS region transcription start site region 23039
Fcna 2 25624666 to 25628030 3364 - protein coding gene ficolin A
Tssr23040 2 25627892 to 25627908 16 - TSS region transcription start site region 23040
Tssr23041 2 25627913 to 25627926 13 - TSS region transcription start site region 23041
Tssr23042 2 25627933 to 25627952 19 - TSS region transcription start site region 23042
Tssr23043 2 25627960 to 25627974 14 - TSS region transcription start site region 23043
Gm35630 2 25635518 to 25640260 4742 + lncRNA gene predicted gene, 35630
Lcn15 2 25644144 to 25648801 4657 + protein coding gene lipocalin 15
Tssr16746 2 25652994 to 25653019 25 + TSS region transcription start site region 16746
Tssr16747 2 25653111 to 25653130 19 + TSS region transcription start site region 16747
Lcn8 2 25653120 to 25656217 3097 + protein coding gene lipocalin 8
Tssr16748 2 25656651 to 25656653 2 + TSS region transcription start site region 16748
Tssr16749 2 25657944 to 25657963 19 + TSS region transcription start site region 16749
Lcn5 2 25657952 to 25661977 4025 + protein coding gene lipocalin 5
Tssr16750 2 25657980 to 25657985 5 + TSS region transcription start site region 16750
Tssr16751 2 25676785 to 25676797 12 + TSS region transcription start site region 16751
Lcn6 2 25676786 to 25681608 4822 + protein coding gene lipocalin 6
Tssr16752 2 25682725 to 25682746 21 + TSS region transcription start site region 16752
Lcn10 2 25682726 to 25686081 3355 + protein coding gene lipocalin 10
Tssr16753 2 25682752 to 25682772 20 + TSS region transcription start site region 16753
Tssr16754 2 25682784 to 25682794 10 + TSS region transcription start site region 16754
Tssr23044 2 25684197 to 25684204 7 - TSS region transcription start site region 23044
Tssr16755 2 25700039 to 25700042 3 + TSS region transcription start site region 16755
Obp2a 2 25700043 to 25703326 3283 + protein coding gene odorant binding protein 2A
Tssr16756 2 25701288 to 25701293 5 + TSS region transcription start site region 16756
Tssr16757 2 25701632 to 25701655 23 + TSS region transcription start site region 16757
Tssr16758 2 25702029 to 25702036 7 + TSS region transcription start site region 16758
Tssr16759 2 25702402 to 25702412 10 + TSS region transcription start site region 16759
Tssr16760 2 25702481 to 25702506 25 + TSS region transcription start site region 16760
Tssr16761 2 25702540 to 25702547 7 + TSS region transcription start site region 16761
A230005M16Rik 2 25705850 to 25709716 3866 - antisense lncRNA gene RIKEN cDNA A230005M16 gene
Cpgi11331 2 25706362 to 25707555 1193 CpG island CpG island 11331
Tssr16762 2 25706721 to 25706730 9 + TSS region transcription start site region 16762
Tssr16763 2 25706743 to 25706794 51 + TSS region transcription start site region 16763
Tssr16764 2 25706795 to 25706824 29 + TSS region transcription start site region 16764
Tssr16765 2 25706826 to 25706913 87 + TSS region transcription start site region 16765
Bmyc 2 25706879 to 25707721 842 + protein coding gene brain expressed myelocytomatosis oncogene
Tssr16766 2 25706932 to 25706941 9 + TSS region transcription start site region 16766
Tssr16767 2 25706977 to 25706999 22 + TSS region transcription start site region 16767
Tssr16768 2 25707121 to 25707124 3 + TSS region transcription start site region 16768
Tssr23045 2 25712772 to 25712780 8 - TSS region transcription start site region 23045
Tssr16769 2 25737005 to 25737008 3 + TSS region transcription start site region 16769
Obp2b 2 25737009 to 25740097 3088 + protein coding gene odorant binding protein 2B
Tssr16770 2 25765531 to 25765535 4 + TSS region transcription start site region 16770
Lcn3 2 25765569 to 25768099 2530 + protein coding gene lipocalin 3
Tssr16771 2 25777015 to 25777021 6 + TSS region transcription start site region 16771
Lcn11 2 25777017 to 25780279 3262 + protein coding gene lipocalin 11
Gm13538 2 25783940 to 25794650 10710 - unclassified non-coding RNA gene predicted gene 13538
Gm13539 2 25784617 to 25787022 2405 + lncRNA gene predicted gene 13539
Tssr23046 2 25785674 to 25785693 19 - TSS region transcription start site region 23046
Glt6d1 2 25793859 to 25815848 21989 - protein coding gene glycosyltransferase 6 domain containing 1