Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25325866-25465902

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
AA543186 2 25327450 to 25332571 5121 - lincRNA gene expressed sequence AA543186
Cpgi11311 2 25332057 to 25333321 1264 CpG island CpG island 11311
Tssr16697 2 25332222 to 25332247 25 + TSS region transcription start site region 16697
Tssr22969 2 25332481 to 25332495 14 - TSS region transcription start site region 22969
Tssr22970 2 25332524 to 25332602 78 - TSS region transcription start site region 22970
Tssr16698 2 25332732 to 25332782 50 + TSS region transcription start site region 16698
Man1b1 2 25332743 to 25352213 19470 + protein coding gene mannosidase, alpha, class 1B, member 1
Tssr16699 2 25332795 to 25332813 18 + TSS region transcription start site region 16699
Gm25220 2 25339651 to 25339745 94 + snRNA gene predicted gene, 25220
Tssr16700 2 25341715 to 25341719 4 + TSS region transcription start site region 16700
Tssr16701 2 25346274 to 25346281 7 + TSS region transcription start site region 16701
D2Mit32 2 25346284 to 25346384 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 32
Pcfm1 2 25346284 to 25346384 100 QTL periosteal circumference and femur length 1
Dpp7 2 25352276 to 25356359 4083 - protein coding gene dipeptidylpeptidase 7
Tssr22971 2 25356311 to 25356318 7 - TSS region transcription start site region 22971
Tssr22972 2 25356319 to 25356366 47 - TSS region transcription start site region 22972
Tssr16702 2 25356447 to 25356476 29 + TSS region transcription start site region 16702
Gm46732 2 25357507 to 25358001 494 + lncRNA gene predicted gene, 46732
Uap1l1 2 25361489 to 25366097 4608 - protein coding gene UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
Tssr22973 2 25363488 to 25363521 33 - TSS region transcription start site region 22973
Cpgi11312 2 25364984 to 25365914 930 CpG island CpG island 11312
Tssr22974 2 25365156 to 25365183 27 - TSS region transcription start site region 22974
Tssr22975 2 25365612 to 25365635 23 - TSS region transcription start site region 22975
Tssr22976 2 25365639 to 25365668 29 - TSS region transcription start site region 22976
Tssr16703 2 25366589 to 25366604 15 + TSS region transcription start site region 16703
Cpgi11313 2 25371896 to 25373386 1490 CpG island CpG island 11313
Tssr16704 2 25372315 to 25372368 53 + TSS region transcription start site region 16704
Sapcd2 2 25372321 to 25378213 5892 + protein coding gene suppressor APC domain containing 2
Tssr16705 2 25372373 to 25372396 23 + TSS region transcription start site region 16705
Tssr16706 2 25372714 to 25372719 5 + TSS region transcription start site region 16706
Tssr16707 2 25373233 to 25373241 8 + TSS region transcription start site region 16707
Tssr16708 2 25373255 to 25373266 11 + TSS region transcription start site region 16708
Cpgi11314 2 25395826 to 25396534 708 CpG island CpG island 11314
Tssr16709 2 25395866 to 25395902 36 + TSS region transcription start site region 16709
Entpd2 2 25395874 to 25401321 5447 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 2
Tssr16710 2 25395910 to 25395935 25 + TSS region transcription start site region 16710
Cpgi11315 2 25400485 to 25401012 527 CpG island CpG island 11315
Tssr16711 2 25400545 to 25400557 12 + TSS region transcription start site region 16711
Cpgi11316 2 25402852 to 25403800 948 CpG island CpG island 11316
Tssr16712 2 25403044 to 25403115 71 + TSS region transcription start site region 16712
Npdc1 2 25403050 to 25409494 6444 + protein coding gene neural proliferation, differentiation and control 1
Tssr16713 2 25403128 to 25403200 72 + TSS region transcription start site region 16713
Adip22 2 25418039 to 25418228 189 QTL adiposity 22
D2Mit293 2 25418039 to 25418228 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 293
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
Tssr16714 2 25423234 to 25423250 16 + TSS region transcription start site region 16714
Fut7 2 25423267 to 25426374 3107 + protein coding gene fucosyltransferase 7
Tssr16715 2 25424632 to 25424673 41 + TSS region transcription start site region 16715
Cpgi11317 2 25425266 to 25425856 590 CpG island CpG island 11317
Cpgi11318 2 25428172 to 25429692 1520 CpG island CpG island 11318
Tssr16716 2 25428566 to 25428576 10 + TSS region transcription start site region 16716
Tssr16717 2 25428591 to 25428605 14 + TSS region transcription start site region 16717
Tssr16718 2 25428644 to 25428686 42 + TSS region transcription start site region 16718
Tssr16719 2 25428699 to 25428715 16 + TSS region transcription start site region 16719
Abca2 2 25428703 to 25448540 19837 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 2
Tssr16720 2 25428717 to 25428730 13 + TSS region transcription start site region 16720
Tssr431 2 25429386 to 25429396 10 + TSS region transcription start site region 431
Tssr16721 2 25431238 to 25431254 16 + TSS region transcription start site region 16721
Cpgi11319 2 25433056 to 25433371 315 CpG island CpG island 11319
Cpgi11320 2 25441267 to 25441464 197 CpG island CpG island 11320
Mir3087 2 25442779 to 25442834 55 + miRNA gene microRNA 3087
Paxx 2 25455141 to 25461094 5953 - protein coding gene non-homologous end joining factor
Tssr16722 2 25456830 to 25456850 20 + TSS region transcription start site region 16722
Clic3 2 25456843 to 25458772 1929 + protein coding gene chloride intracellular channel 3
Tssr16723 2 25457632 to 25457670 38 + TSS region transcription start site region 16723
Cpgi11321 2 25460550 to 25461304 754 CpG island CpG island 11321
Tssr22977 2 25460906 to 25460931 25 - TSS region transcription start site region 22977
Tssr22978 2 25460933 to 25460959 26 - TSS region transcription start site region 22978
Tssr22979 2 25460970 to 25460983 13 - TSS region transcription start site region 22979
Tssr22980 2 25460993 to 25461004 11 - TSS region transcription start site region 22980
Tssr22981 2 25461021 to 25461040 19 - TSS region transcription start site region 22981
Tssr22982 2 25461069 to 25461080 11 - TSS region transcription start site region 22982
Tssr22983 2 25461107 to 25461112 5 - TSS region transcription start site region 22983
Tssr22984 2 25461118 to 25461129 11 - TSS region transcription start site region 22984
Tssr16724 2 25461201 to 25461221 20 + TSS region transcription start site region 16724
Tssr22985 2 25465882 to 25465894 12 - TSS region transcription start site region 22985