Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25295639-25435668

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grin1 2 25291181 to 25319187 28006 - protein coding gene glutamate receptor, ionotropic, NMDA1 (zeta 1)
Grin1os 2 25291220 to 25298925 7705 + antisense lncRNA gene glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand
D2Bwg0161e 2 25301179 to 25301329 150 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0161 expressed
Cpgi11308 2 25305007 to 25305556 549 CpG island CpG island 11308
Tssr22963 2 25305127 to 25305146 19 - TSS region transcription start site region 22963
Cpgi11309 2 25311039 to 25311559 520 CpG island CpG island 11309
Tssr22964 2 25311503 to 25311529 26 - TSS region transcription start site region 22964
Tssr22965 2 25316856 to 25316867 11 - TSS region transcription start site region 22965
Tssr22966 2 25316879 to 25316892 13 - TSS region transcription start site region 22966
Cpgi11310 2 25318185 to 25319573 1388 CpG island CpG island 11310
Tssr22967 2 25319109 to 25319170 61 - TSS region transcription start site region 22967
Tssr22968 2 25319193 to 25319204 11 - TSS region transcription start site region 22968
AA543186 2 25327450 to 25332571 5121 - lincRNA gene expressed sequence AA543186
Cpgi11311 2 25332057 to 25333321 1264 CpG island CpG island 11311
Tssr16697 2 25332222 to 25332247 25 + TSS region transcription start site region 16697
Tssr22969 2 25332481 to 25332495 14 - TSS region transcription start site region 22969
Tssr22970 2 25332524 to 25332602 78 - TSS region transcription start site region 22970
Tssr16698 2 25332732 to 25332782 50 + TSS region transcription start site region 16698
Man1b1 2 25332743 to 25352213 19470 + protein coding gene mannosidase, alpha, class 1B, member 1
Tssr16699 2 25332795 to 25332813 18 + TSS region transcription start site region 16699
Gm25220 2 25339651 to 25339745 94 + snRNA gene predicted gene, 25220
Tssr16700 2 25341715 to 25341719 4 + TSS region transcription start site region 16700
Tssr16701 2 25346274 to 25346281 7 + TSS region transcription start site region 16701
Pcfm1 2 25346284 to 25346384 100 QTL periosteal circumference and femur length 1
D2Mit32 2 25346284 to 25346384 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 32
Dpp7 2 25352276 to 25356359 4083 - protein coding gene dipeptidylpeptidase 7
Tssr22971 2 25356311 to 25356318 7 - TSS region transcription start site region 22971
Tssr22972 2 25356319 to 25356366 47 - TSS region transcription start site region 22972
Tssr16702 2 25356447 to 25356476 29 + TSS region transcription start site region 16702
Gm46732 2 25357507 to 25358001 494 + lncRNA gene predicted gene, 46732
Uap1l1 2 25361489 to 25366097 4608 - protein coding gene UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
Tssr22973 2 25363488 to 25363521 33 - TSS region transcription start site region 22973
Cpgi11312 2 25364984 to 25365914 930 CpG island CpG island 11312
Tssr22974 2 25365156 to 25365183 27 - TSS region transcription start site region 22974
Tssr22975 2 25365612 to 25365635 23 - TSS region transcription start site region 22975
Tssr22976 2 25365639 to 25365668 29 - TSS region transcription start site region 22976
Tssr16703 2 25366589 to 25366604 15 + TSS region transcription start site region 16703
Cpgi11313 2 25371896 to 25373386 1490 CpG island CpG island 11313
Tssr16704 2 25372315 to 25372368 53 + TSS region transcription start site region 16704
Sapcd2 2 25372321 to 25378213 5892 + protein coding gene suppressor APC domain containing 2
Tssr16705 2 25372373 to 25372396 23 + TSS region transcription start site region 16705
Tssr16706 2 25372714 to 25372719 5 + TSS region transcription start site region 16706
Tssr16707 2 25373233 to 25373241 8 + TSS region transcription start site region 16707
Tssr16708 2 25373255 to 25373266 11 + TSS region transcription start site region 16708
Cpgi11314 2 25395826 to 25396534 708 CpG island CpG island 11314
Tssr16709 2 25395866 to 25395902 36 + TSS region transcription start site region 16709
Entpd2 2 25395874 to 25401321 5447 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 2
Tssr16710 2 25395910 to 25395935 25 + TSS region transcription start site region 16710
Cpgi11315 2 25400485 to 25401012 527 CpG island CpG island 11315
Tssr16711 2 25400545 to 25400557 12 + TSS region transcription start site region 16711
Cpgi11316 2 25402852 to 25403800 948 CpG island CpG island 11316
Tssr16712 2 25403044 to 25403115 71 + TSS region transcription start site region 16712
Npdc1 2 25403050 to 25409494 6444 + protein coding gene neural proliferation, differentiation and control 1
Tssr16713 2 25403128 to 25403200 72 + TSS region transcription start site region 16713
Adip22 2 25418039 to 25418228 189 QTL adiposity 22
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
D2Mit293 2 25418039 to 25418228 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 293
Tssr16714 2 25423234 to 25423250 16 + TSS region transcription start site region 16714
Fut7 2 25423267 to 25426374 3107 + protein coding gene fucosyltransferase 7
Tssr16715 2 25424632 to 25424673 41 + TSS region transcription start site region 16715
Cpgi11317 2 25425266 to 25425856 590 CpG island CpG island 11317
Cpgi11318 2 25428172 to 25429692 1520 CpG island CpG island 11318
Tssr16716 2 25428566 to 25428576 10 + TSS region transcription start site region 16716
Tssr16717 2 25428591 to 25428605 14 + TSS region transcription start site region 16717
Tssr16718 2 25428644 to 25428686 42 + TSS region transcription start site region 16718
Tssr16719 2 25428699 to 25428715 16 + TSS region transcription start site region 16719
Abca2 2 25428703 to 25448540 19837 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 2
Tssr16720 2 25428717 to 25428730 13 + TSS region transcription start site region 16720
Tssr431 2 25429386 to 25429396 10 + TSS region transcription start site region 431
Tssr16721 2 25431238 to 25431254 16 + TSS region transcription start site region 16721
Cpgi11319 2 25433056 to 25433371 315 CpG island CpG island 11319