Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25246267-25636464

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndor1 2 25244813 to 25255443 10630 - protein coding gene NADPH dependent diflavin oxidoreductase 1
Tssr22956 2 25246841 to 25246864 23 - TSS region transcription start site region 22956
Cpgi11303 2 25255080 to 25256081 1001 CpG island CpG island 11303
Tssr22957 2 25255348 to 25255397 49 - TSS region transcription start site region 22957
Tssr16677 2 25255439 to 25255486 47 + TSS region transcription start site region 16677
Tmem203 2 25255439 to 25256292 853 + protein coding gene transmembrane protein 203
Tssr16678 2 25255665 to 25255685 20 + TSS region transcription start site region 16678
Cpgi11304 2 25262263 to 25263942 1679 CpG island CpG island 11304
Tssr16679 2 25262534 to 25262543 9 + TSS region transcription start site region 16679
Tssr16680 2 25262556 to 25262563 7 + TSS region transcription start site region 16680
Tssr16681 2 25262589 to 25262670 81 + TSS region transcription start site region 16681
Tprn 2 25262618 to 25269885 7267 + protein coding gene taperin
Tssr16682 2 25263199 to 25263210 11 + TSS region transcription start site region 16682
Tssr16683 2 25263212 to 25263219 7 + TSS region transcription start site region 16683
Tssr16684 2 25263292 to 25263347 55 + TSS region transcription start site region 16684
Tssr16685 2 25263359 to 25263368 9 + TSS region transcription start site region 16685
Tssr16686 2 25263372 to 25263381 9 + TSS region transcription start site region 16686
Tssr16687 2 25263919 to 25263931 12 + TSS region transcription start site region 16687
Tssr16688 2 25264270 to 25264290 20 + TSS region transcription start site region 16688
Tssr16689 2 25264304 to 25264313 9 + TSS region transcription start site region 16689
Tssr16690 2 25265557 to 25265558 1 + TSS region transcription start site region 16690
Ssna1 2 25271039 to 25272418 1379 - protein coding gene SS nuclear autoantigen 1
Cpgi11305 2 25271716 to 25273214 1498 CpG island CpG island 11305
Tssr22958 2 25272336 to 25272376 40 - TSS region transcription start site region 22958
Tssr22959 2 25272380 to 25272421 41 - TSS region transcription start site region 22959
Tssr16691 2 25272462 to 25272473 11 + TSS region transcription start site region 16691
Tssr16692 2 25272475 to 25272486 11 + TSS region transcription start site region 16692
Anapc2 2 25272478 to 25285915 13437 + protein coding gene anaphase promoting complex subunit 2
Tssr16693 2 25272487 to 25272517 30 + TSS region transcription start site region 16693
Tssr22960 2 25288053 to 25288073 20 - TSS region transcription start site region 22960
Tssr16694 2 25288135 to 25288150 15 + TSS region transcription start site region 16694
Tmem210 2 25288145 to 25289187 1042 + protein coding gene transmembrane protein 210
Tssr16695 2 25288167 to 25288175 8 + TSS region transcription start site region 16695
Cpgi11306 2 25289821 to 25291321 1500 CpG island CpG island 11306
Tssr16696 2 25289899 to 25289935 36 + TSS region transcription start site region 16696
Lrrc26 2 25289915 to 25291180 1265 + protein coding gene leucine rich repeat containing 26
Tssr430 2 25289951 to 25289961 10 + TSS region transcription start site region 430
Grin1 2 25291181 to 25319187 28006 - protein coding gene glutamate receptor, ionotropic, NMDA1 (zeta 1)
Grin1os 2 25291220 to 25298925 7705 + antisense lncRNA gene glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand
Tssr22961 2 25291666 to 25291682 16 - TSS region transcription start site region 22961
Tssr22962 2 25291779 to 25291790 11 - TSS region transcription start site region 22962
Cpgi11307 2 25291949 to 25292487 538 CpG island CpG island 11307
D2Bwg0161e 2 25301179 to 25301329 150 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0161 expressed
Cpgi11308 2 25305007 to 25305556 549 CpG island CpG island 11308
Tssr22963 2 25305127 to 25305146 19 - TSS region transcription start site region 22963
Cpgi11309 2 25311039 to 25311559 520 CpG island CpG island 11309
Tssr22964 2 25311503 to 25311529 26 - TSS region transcription start site region 22964
Tssr22965 2 25316856 to 25316867 11 - TSS region transcription start site region 22965
Tssr22966 2 25316879 to 25316892 13 - TSS region transcription start site region 22966
Cpgi11310 2 25318185 to 25319573 1388 CpG island CpG island 11310
Tssr22967 2 25319109 to 25319170 61 - TSS region transcription start site region 22967
Tssr22968 2 25319193 to 25319204 11 - TSS region transcription start site region 22968
AA543186 2 25327450 to 25332571 5121 - lincRNA gene expressed sequence AA543186
Cpgi11311 2 25332057 to 25333321 1264 CpG island CpG island 11311
Tssr16697 2 25332222 to 25332247 25 + TSS region transcription start site region 16697
Tssr22969 2 25332481 to 25332495 14 - TSS region transcription start site region 22969
Tssr22970 2 25332524 to 25332602 78 - TSS region transcription start site region 22970
Tssr16698 2 25332732 to 25332782 50 + TSS region transcription start site region 16698
Man1b1 2 25332743 to 25352213 19470 + protein coding gene mannosidase, alpha, class 1B, member 1
Tssr16699 2 25332795 to 25332813 18 + TSS region transcription start site region 16699
Gm25220 2 25339651 to 25339745 94 + snRNA gene predicted gene, 25220
Tssr16700 2 25341715 to 25341719 4 + TSS region transcription start site region 16700
Tssr16701 2 25346274 to 25346281 7 + TSS region transcription start site region 16701
Pcfm1 2 25346284 to 25346384 100 QTL periosteal circumference and femur length 1
D2Mit32 2 25346284 to 25346384 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 32
Dpp7 2 25352276 to 25356359 4083 - protein coding gene dipeptidylpeptidase 7
Tssr22971 2 25356311 to 25356318 7 - TSS region transcription start site region 22971
Tssr22972 2 25356319 to 25356366 47 - TSS region transcription start site region 22972
Tssr16702 2 25356447 to 25356476 29 + TSS region transcription start site region 16702
Gm46732 2 25357507 to 25358001 494 + lncRNA gene predicted gene, 46732
Uap1l1 2 25361489 to 25366097 4608 - protein coding gene UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
Tssr22973 2 25363488 to 25363521 33 - TSS region transcription start site region 22973
Cpgi11312 2 25364984 to 25365914 930 CpG island CpG island 11312
Tssr22974 2 25365156 to 25365183 27 - TSS region transcription start site region 22974
Tssr22975 2 25365612 to 25365635 23 - TSS region transcription start site region 22975
Tssr22976 2 25365639 to 25365668 29 - TSS region transcription start site region 22976
Tssr16703 2 25366589 to 25366604 15 + TSS region transcription start site region 16703
Cpgi11313 2 25371896 to 25373386 1490 CpG island CpG island 11313
Tssr16704 2 25372315 to 25372368 53 + TSS region transcription start site region 16704
Sapcd2 2 25372321 to 25378213 5892 + protein coding gene suppressor APC domain containing 2
Tssr16705 2 25372373 to 25372396 23 + TSS region transcription start site region 16705
Tssr16706 2 25372714 to 25372719 5 + TSS region transcription start site region 16706
Tssr16707 2 25373233 to 25373241 8 + TSS region transcription start site region 16707
Tssr16708 2 25373255 to 25373266 11 + TSS region transcription start site region 16708
Cpgi11314 2 25395826 to 25396534 708 CpG island CpG island 11314
Tssr16709 2 25395866 to 25395902 36 + TSS region transcription start site region 16709
Entpd2 2 25395874 to 25401321 5447 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 2
Tssr16710 2 25395910 to 25395935 25 + TSS region transcription start site region 16710
Cpgi11315 2 25400485 to 25401012 527 CpG island CpG island 11315
Tssr16711 2 25400545 to 25400557 12 + TSS region transcription start site region 16711
Cpgi11316 2 25402852 to 25403800 948 CpG island CpG island 11316
Tssr16712 2 25403044 to 25403115 71 + TSS region transcription start site region 16712
Npdc1 2 25403050 to 25409494 6444 + protein coding gene neural proliferation, differentiation and control 1
Tssr16713 2 25403128 to 25403200 72 + TSS region transcription start site region 16713
Adip22 2 25418039 to 25418228 189 QTL adiposity 22
D2Mit293 2 25418039 to 25418228 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 293
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
Tssr16714 2 25423234 to 25423250 16 + TSS region transcription start site region 16714
Fut7 2 25423267 to 25426374 3107 + protein coding gene fucosyltransferase 7
Tssr16715 2 25424632 to 25424673 41 + TSS region transcription start site region 16715
Cpgi11317 2 25425266 to 25425856 590 CpG island CpG island 11317
Cpgi11318 2 25428172 to 25429692 1520 CpG island CpG island 11318
Tssr16716 2 25428566 to 25428576 10 + TSS region transcription start site region 16716
Tssr16717 2 25428591 to 25428605 14 + TSS region transcription start site region 16717
Tssr16718 2 25428644 to 25428686 42 + TSS region transcription start site region 16718
Tssr16719 2 25428699 to 25428715 16 + TSS region transcription start site region 16719
Abca2 2 25428703 to 25448540 19837 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 2
Tssr16720 2 25428717 to 25428730 13 + TSS region transcription start site region 16720
Tssr431 2 25429386 to 25429396 10 + TSS region transcription start site region 431
Tssr16721 2 25431238 to 25431254 16 + TSS region transcription start site region 16721
Cpgi11319 2 25433056 to 25433371 315 CpG island CpG island 11319
Cpgi11320 2 25441267 to 25441464 197 CpG island CpG island 11320
Mir3087 2 25442779 to 25442834 55 + miRNA gene microRNA 3087
Paxx 2 25455141 to 25461094 5953 - protein coding gene non-homologous end joining factor
Tssr16722 2 25456830 to 25456850 20 + TSS region transcription start site region 16722
Clic3 2 25456843 to 25458772 1929 + protein coding gene chloride intracellular channel 3
Tssr16723 2 25457632 to 25457670 38 + TSS region transcription start site region 16723
Cpgi11321 2 25460550 to 25461304 754 CpG island CpG island 11321
Tssr22977 2 25460906 to 25460931 25 - TSS region transcription start site region 22977
Tssr22978 2 25460933 to 25460959 26 - TSS region transcription start site region 22978
Tssr22979 2 25460970 to 25460983 13 - TSS region transcription start site region 22979
Tssr22980 2 25460993 to 25461004 11 - TSS region transcription start site region 22980
Tssr22981 2 25461021 to 25461040 19 - TSS region transcription start site region 22981
Tssr22982 2 25461069 to 25461080 11 - TSS region transcription start site region 22982
Tssr22983 2 25461107 to 25461112 5 - TSS region transcription start site region 22983
Tssr22984 2 25461118 to 25461129 11 - TSS region transcription start site region 22984
Tssr16724 2 25461201 to 25461221 20 + TSS region transcription start site region 16724
Tssr22985 2 25465882 to 25465894 12 - TSS region transcription start site region 22985
Ptgds 2 25466709 to 25470046 3337 - protein coding gene prostaglandin D2 synthase (brain)
Tssr22986 2 25466805 to 25466820 15 - TSS region transcription start site region 22986
Tssr16725 2 25467309 to 25467317 8 + TSS region transcription start site region 16725
Tssr16726 2 25467826 to 25467835 9 + TSS region transcription start site region 16726
Tssr22987 2 25467838 to 25467845 7 - TSS region transcription start site region 22987
Tssr16727 2 25467875 to 25467897 22 + TSS region transcription start site region 16727
Tssr22988 2 25467908 to 25467927 19 - TSS region transcription start site region 22988
Tssr22989 2 25468089 to 25468110 21 - TSS region transcription start site region 22989
Tssr16728 2 25468098 to 25468113 15 + TSS region transcription start site region 16728
Tssr16729 2 25468121 to 25468140 19 + TSS region transcription start site region 16729
Tssr22990 2 25468132 to 25468145 13 - TSS region transcription start site region 22990
Tssr22991 2 25468146 to 25468162 16 - TSS region transcription start site region 22991
Tssr16730 2 25468830 to 25468878 48 + TSS region transcription start site region 16730
Tssr22992 2 25468856 to 25468868 12 - TSS region transcription start site region 22992
Tssr22993 2 25468881 to 25468896 15 - TSS region transcription start site region 22993
Tssr16731 2 25468985 to 25468993 8 + TSS region transcription start site region 16731
Tssr16732 2 25469004 to 25469014 10 + TSS region transcription start site region 16732
Tssr22994 2 25469025 to 25469044 19 - TSS region transcription start site region 22994
Tssr22995 2 25469093 to 25469106 13 - TSS region transcription start site region 22995
Tssr22996 2 25469111 to 25469122 11 - TSS region transcription start site region 22996
Tssr22997 2 25469123 to 25469193 70 - TSS region transcription start site region 22997
Tssr22998 2 25469742 to 25469758 16 - TSS region transcription start site region 22998
Tssr432 2 25470014 to 25470019 5 - TSS region transcription start site region 432
Tssr22999 2 25470031 to 25470094 63 - TSS region transcription start site region 22999
Tssr23000 2 25470096 to 25470110 14 - TSS region transcription start site region 23000
Tssr23001 2 25470111 to 25470112 1 - TSS region transcription start site region 23001
Tssr23002 2 25470417 to 25470456 39 - TSS region transcription start site region 23002
Gm35287 2 25475304 to 25478556 3252 - lncRNA gene predicted gene, 35287
Tssr23003 2 25478060 to 25478072 12 - TSS region transcription start site region 23003
Tssr23004 2 25478075 to 25478094 19 - TSS region transcription start site region 23004
Tssr23005 2 25478095 to 25478115 20 - TSS region transcription start site region 23005
Tssr23006 2 25478350 to 25478356 6 - TSS region transcription start site region 23006
Lcn12 2 25490845 to 25493911 3066 - protein coding gene lipocalin 12
Tssr23007 2 25493434 to 25493439 5 - TSS region transcription start site region 23007
Tssr23008 2 25493443 to 25493464 21 - TSS region transcription start site region 23008
Tssr23009 2 25493466 to 25493479 13 - TSS region transcription start site region 23009
Tssr23010 2 25493882 to 25493889 7 - TSS region transcription start site region 23010
Tssr23011 2 25493894 to 25493904 10 - TSS region transcription start site region 23011
Tssr23012 2 25493905 to 25493960 55 - TSS region transcription start site region 23012
Tssr23013 2 25493968 to 25493972 4 - TSS region transcription start site region 23013
C8g 2 25498651 to 25501719 3068 - protein coding gene complement component 8, gamma polypeptide
Tssr433 2 25500141 to 25500147 6 - TSS region transcription start site region 433
Tssr23014 2 25500237 to 25500277 40 - TSS region transcription start site region 23014
Tssr23015 2 25500279 to 25500290 11 - TSS region transcription start site region 23015
Cpgi11322 2 25500649 to 25501197 548 CpG island CpG island 11322
Tssr23016 2 25500664 to 25500692 28 - TSS region transcription start site region 23016
Tssr16733 2 25500764 to 25500769 5 + TSS region transcription start site region 16733
Fbxw5 2 25500767 to 25505471 4704 + protein coding gene F-box and WD-40 domain protein 5
Tssr16734 2 25500772 to 25500783 11 + TSS region transcription start site region 16734
Tssr16735 2 25500789 to 25500864 75 + TSS region transcription start site region 16735
Tssr23017 2 25501717 to 25501724 7 - TSS region transcription start site region 23017
Tssr23018 2 25501743 to 25501759 16 - TSS region transcription start site region 23018
Tssr16736 2 25501819 to 25501841 22 + TSS region transcription start site region 16736
Tssr16737 2 25501843 to 25501850 7 + TSS region transcription start site region 16737
Tssr16738 2 25501860 to 25501874 14 + TSS region transcription start site region 16738
Traf2 2 25517982 to 25546940 28958 - protein coding gene TNF receptor-associated factor 2
Tssr23019 2 25535116 to 25535121 5 - TSS region transcription start site region 23019
Tssr16739 2 25543426 to 25543439 13 + TSS region transcription start site region 16739
Gm13433 2 25543479 to 25543718 239 + pseudogene predicted gene 13433
Cpgi11323 2 25546372 to 25547284 912 CpG island CpG island 11323
Tssr23020 2 25546872 to 25546915 43 - TSS region transcription start site region 23020
Tssr23021 2 25546961 to 25546975 14 - TSS region transcription start site region 23021
Gm35476 2 25547922 to 25557811 9889 - lncRNA gene predicted gene, 35476
Gm13432 2 25554309 to 25554549 240 - pseudogene predicted gene 13432
Cpgi11324 2 25557258 to 25558522 1264 CpG island CpG island 11324
Tssr16740 2 25557846 to 25557851 5 + TSS region transcription start site region 16740
Edf1 2 25557847 to 25562082 4235 + protein coding gene endothelial differentiation-related factor 1
Tssr16741 2 25557861 to 25557923 62 + TSS region transcription start site region 16741
Mamdc4 2 25563112 to 25572158 9046 - protein coding gene MAM domain containing 4
Tssr23022 2 25571301 to 25571321 20 - TSS region transcription start site region 23022
Tssr434 2 25571371 to 25571384 13 - TSS region transcription start site region 434
Phpt1 2 25573431 to 25574871 1440 - protein coding gene phosphohistidine phosphatase 1