Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25086274-25606281

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279 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Noxa1 2 25085667 to 25095149 9482 - protein coding gene NADPH oxidase activator 1
Cpgi11293 2 25094736 to 25094982 246 CpG island CpG island 11293
Tssr22934 2 25095080 to 25095092 12 - TSS region transcription start site region 22934
Tssr22935 2 25095095 to 25095110 15 - TSS region transcription start site region 22935
Tssr22936 2 25095125 to 25095138 13 - TSS region transcription start site region 22936
Tssr22937 2 25095152 to 25095169 17 - TSS region transcription start site region 22937
Gm13387 2 25122603 to 25145396 22793 - lincRNA gene predicted gene 13387
Cpgi11294 2 25167922 to 25168445 523 CpG island CpG island 11294
Cpgi11295 2 25180372 to 25182057 1685 CpG island CpG island 11295
Tssr16660 2 25180737 to 25180764 27 + TSS region transcription start site region 16660
Nrarp 2 25180758 to 25183339 2581 + protein coding gene Notch-regulated ankyrin repeat protein
Gm38287 2 25180781 to 25183339 2558 - antisense lncRNA gene predicted gene, 38287
Cpgi11296 2 25185577 to 25186517 940 CpG island CpG island 11296
Tor4a 2 25192966 to 25196886 3920 - protein coding gene torsin family 4, member A
Tssr16661 2 25194806 to 25194820 14 + TSS region transcription start site region 16661
Cpgi11297 2 25194849 to 25195980 1131 CpG island CpG island 11297
Tssr22938 2 25196579 to 25196604 25 - TSS region transcription start site region 22938
Tssr22939 2 25196607 to 25196640 33 - TSS region transcription start site region 22939
Tssr22940 2 25196708 to 25196715 7 - TSS region transcription start site region 22940
Tssr22941 2 25196742 to 25196755 13 - TSS region transcription start site region 22941
Tssr22942 2 25196759 to 25196823 64 - TSS region transcription start site region 22942
Nelfb 2 25199712 to 25211489 11777 - protein coding gene negative elongation factor complex member B
Gm22572 2 25208623 to 25208727 104 + snRNA gene predicted gene, 22572
Cpgi11298 2 25210708 to 25211653 945 CpG island CpG island 11298
Tssr22943 2 25211344 to 25211357 13 - TSS region transcription start site region 22943
Tssr22944 2 25211367 to 25211436 69 - TSS region transcription start site region 22944
Stpg3 2 25212207 to 25214637 2430 - protein coding gene sperm tail PG rich repeat containing 3
Cpgi11299 2 25213308 to 25213697 389 CpG island CpG island 11299
Tssr22945 2 25214581 to 25214608 27 - TSS region transcription start site region 22945
Tssr22946 2 25214616 to 25214623 7 - TSS region transcription start site region 22946
Tssr22947 2 25214628 to 25214633 5 - TSS region transcription start site region 22947
Tssr16662 2 25214691 to 25214700 9 + TSS region transcription start site region 16662
Tssr16663 2 25214706 to 25214755 49 + TSS region transcription start site region 16663
Tssr22948 2 25218647 to 25218674 27 - TSS region transcription start site region 22948
Tssr16664 2 25218741 to 25218750 9 + TSS region transcription start site region 16664
Fam166a 2 25218745 to 25222280 3535 + protein coding gene family with sequence similarity 166, member A
Tssr16665 2 25218752 to 25218799 47 + TSS region transcription start site region 16665
Tubb4b 2 25222160 to 25224702 2542 - protein coding gene tubulin, beta 4B class IVB
Cpgi11300 2 25223768 to 25225274 1506 CpG island CpG island 11300
Tssr22949 2 25224230 to 25224268 38 - TSS region transcription start site region 22949
Tssr22950 2 25224653 to 25224659 6 - TSS region transcription start site region 22950
Tssr16666 2 25225043 to 25225071 28 + TSS region transcription start site region 16666
Tssr16667 2 25225363 to 25225375 12 + TSS region transcription start site region 16667
Tssr16668 2 25225416 to 25225431 15 + TSS region transcription start site region 16668
Tssr22951 2 25228420 to 25228459 39 - TSS region transcription start site region 22951
Slc34a3 2 25228897 to 25234271 5374 - protein coding gene solute carrier family 34 (sodium phosphate), member 3
Tssr22952 2 25234177 to 25234192 15 - TSS region transcription start site region 22952
Tssr22953 2 25234203 to 25234223 20 - TSS region transcription start site region 22953
Tssr22954 2 25234227 to 25234251 24 - TSS region transcription start site region 22954
Rnf224 2 25234476 to 25236787 2311 - protein coding gene ring finger protein 224
Cysrt1 2 25238819 to 25239897 1078 - protein coding gene cysteine rich tail 1
Tssr22955 2 25239850 to 25239870 20 - TSS region transcription start site region 22955
Cpgi11301 2 25240769 to 25241137 368 CpG island CpG island 11301
Tssr16669 2 25241579 to 25241596 17 + TSS region transcription start site region 16669
Cpgi11302 2 25241664 to 25243085 1421 CpG island CpG island 11302
Tssr16670 2 25241903 to 25241926 23 + TSS region transcription start site region 16670
Tssr16671 2 25242196 to 25242207 11 + TSS region transcription start site region 16671
Tssr16672 2 25242227 to 25242284 57 + TSS region transcription start site region 16672
Tssr16673 2 25242285 to 25242379 94 + TSS region transcription start site region 16673
Tssr16674 2 25242397 to 25242408 11 + TSS region transcription start site region 16674
Rnf208 2 25242929 to 25244261 1332 + protein coding gene ring finger protein 208
Tssr16675 2 25243059 to 25243087 28 + TSS region transcription start site region 16675
Tssr16676 2 25243238 to 25243249 11 + TSS region transcription start site region 16676
Ndor1 2 25244813 to 25255443 10630 - protein coding gene NADPH dependent diflavin oxidoreductase 1
Tssr22956 2 25246841 to 25246864 23 - TSS region transcription start site region 22956
Cpgi11303 2 25255080 to 25256081 1001 CpG island CpG island 11303
Tssr22957 2 25255348 to 25255397 49 - TSS region transcription start site region 22957
Tssr16677 2 25255439 to 25255486 47 + TSS region transcription start site region 16677
Tmem203 2 25255439 to 25256292 853 + protein coding gene transmembrane protein 203
Tssr16678 2 25255665 to 25255685 20 + TSS region transcription start site region 16678
Cpgi11304 2 25262263 to 25263942 1679 CpG island CpG island 11304
Tssr16679 2 25262534 to 25262543 9 + TSS region transcription start site region 16679
Tssr16680 2 25262556 to 25262563 7 + TSS region transcription start site region 16680
Tssr16681 2 25262589 to 25262670 81 + TSS region transcription start site region 16681
Tprn 2 25262618 to 25269885 7267 + protein coding gene taperin
Tssr16682 2 25263199 to 25263210 11 + TSS region transcription start site region 16682
Tssr16683 2 25263212 to 25263219 7 + TSS region transcription start site region 16683
Tssr16684 2 25263292 to 25263347 55 + TSS region transcription start site region 16684
Tssr16685 2 25263359 to 25263368 9 + TSS region transcription start site region 16685
Tssr16686 2 25263372 to 25263381 9 + TSS region transcription start site region 16686
Tssr16687 2 25263919 to 25263931 12 + TSS region transcription start site region 16687
Tssr16688 2 25264270 to 25264290 20 + TSS region transcription start site region 16688
Tssr16689 2 25264304 to 25264313 9 + TSS region transcription start site region 16689
Tssr16690 2 25265557 to 25265558 1 + TSS region transcription start site region 16690
Ssna1 2 25271039 to 25272418 1379 - protein coding gene SS nuclear autoantigen 1
Cpgi11305 2 25271716 to 25273214 1498 CpG island CpG island 11305
Tssr22958 2 25272336 to 25272376 40 - TSS region transcription start site region 22958
Tssr22959 2 25272380 to 25272421 41 - TSS region transcription start site region 22959
Tssr16691 2 25272462 to 25272473 11 + TSS region transcription start site region 16691
Tssr16692 2 25272475 to 25272486 11 + TSS region transcription start site region 16692
Anapc2 2 25272478 to 25285915 13437 + protein coding gene anaphase promoting complex subunit 2
Tssr16693 2 25272487 to 25272517 30 + TSS region transcription start site region 16693
Tssr22960 2 25288053 to 25288073 20 - TSS region transcription start site region 22960
Tssr16694 2 25288135 to 25288150 15 + TSS region transcription start site region 16694
Tmem210 2 25288145 to 25289187 1042 + protein coding gene transmembrane protein 210
Tssr16695 2 25288167 to 25288175 8 + TSS region transcription start site region 16695
Cpgi11306 2 25289821 to 25291321 1500 CpG island CpG island 11306
Tssr16696 2 25289899 to 25289935 36 + TSS region transcription start site region 16696
Lrrc26 2 25289915 to 25291180 1265 + protein coding gene leucine rich repeat containing 26
Tssr430 2 25289951 to 25289961 10 + TSS region transcription start site region 430
Grin1 2 25291181 to 25319187 28006 - protein coding gene glutamate receptor, ionotropic, NMDA1 (zeta 1)
Grin1os 2 25291220 to 25298925 7705 + antisense lncRNA gene glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand
Tssr22961 2 25291666 to 25291682 16 - TSS region transcription start site region 22961
Tssr22962 2 25291779 to 25291790 11 - TSS region transcription start site region 22962
Cpgi11307 2 25291949 to 25292487 538 CpG island CpG island 11307
D2Bwg0161e 2 25301179 to 25301329 150 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0161 expressed
Cpgi11308 2 25305007 to 25305556 549 CpG island CpG island 11308
Tssr22963 2 25305127 to 25305146 19 - TSS region transcription start site region 22963
Cpgi11309 2 25311039 to 25311559 520 CpG island CpG island 11309
Tssr22964 2 25311503 to 25311529 26 - TSS region transcription start site region 22964
Tssr22965 2 25316856 to 25316867 11 - TSS region transcription start site region 22965
Tssr22966 2 25316879 to 25316892 13 - TSS region transcription start site region 22966
Cpgi11310 2 25318185 to 25319573 1388 CpG island CpG island 11310
Tssr22967 2 25319109 to 25319170 61 - TSS region transcription start site region 22967
Tssr22968 2 25319193 to 25319204 11 - TSS region transcription start site region 22968
AA543186 2 25327450 to 25332571 5121 - lincRNA gene expressed sequence AA543186
Cpgi11311 2 25332057 to 25333321 1264 CpG island CpG island 11311
Tssr16697 2 25332222 to 25332247 25 + TSS region transcription start site region 16697
Tssr22969 2 25332481 to 25332495 14 - TSS region transcription start site region 22969
Tssr22970 2 25332524 to 25332602 78 - TSS region transcription start site region 22970
Tssr16698 2 25332732 to 25332782 50 + TSS region transcription start site region 16698
Man1b1 2 25332743 to 25352213 19470 + protein coding gene mannosidase, alpha, class 1B, member 1
Tssr16699 2 25332795 to 25332813 18 + TSS region transcription start site region 16699
Gm25220 2 25339651 to 25339745 94 + snRNA gene predicted gene, 25220
Tssr16700 2 25341715 to 25341719 4 + TSS region transcription start site region 16700
Tssr16701 2 25346274 to 25346281 7 + TSS region transcription start site region 16701
D2Mit32 2 25346284 to 25346384 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 32
Pcfm1 2 25346284 to 25346384 100 QTL periosteal circumference and femur length 1
Dpp7 2 25352276 to 25356359 4083 - protein coding gene dipeptidylpeptidase 7
Tssr22971 2 25356311 to 25356318 7 - TSS region transcription start site region 22971
Tssr22972 2 25356319 to 25356366 47 - TSS region transcription start site region 22972
Tssr16702 2 25356447 to 25356476 29 + TSS region transcription start site region 16702
Gm46732 2 25357507 to 25358001 494 + lncRNA gene predicted gene, 46732
Uap1l1 2 25361489 to 25366097 4608 - protein coding gene UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
Tssr22973 2 25363488 to 25363521 33 - TSS region transcription start site region 22973
Cpgi11312 2 25364984 to 25365914 930 CpG island CpG island 11312
Tssr22974 2 25365156 to 25365183 27 - TSS region transcription start site region 22974
Tssr22975 2 25365612 to 25365635 23 - TSS region transcription start site region 22975
Tssr22976 2 25365639 to 25365668 29 - TSS region transcription start site region 22976
Tssr16703 2 25366589 to 25366604 15 + TSS region transcription start site region 16703
Cpgi11313 2 25371896 to 25373386 1490 CpG island CpG island 11313
Tssr16704 2 25372315 to 25372368 53 + TSS region transcription start site region 16704
Sapcd2 2 25372321 to 25378213 5892 + protein coding gene suppressor APC domain containing 2
Tssr16705 2 25372373 to 25372396 23 + TSS region transcription start site region 16705
Tssr16706 2 25372714 to 25372719 5 + TSS region transcription start site region 16706
Tssr16707 2 25373233 to 25373241 8 + TSS region transcription start site region 16707
Tssr16708 2 25373255 to 25373266 11 + TSS region transcription start site region 16708
Cpgi11314 2 25395826 to 25396534 708 CpG island CpG island 11314
Tssr16709 2 25395866 to 25395902 36 + TSS region transcription start site region 16709
Entpd2 2 25395874 to 25401321 5447 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 2
Tssr16710 2 25395910 to 25395935 25 + TSS region transcription start site region 16710
Cpgi11315 2 25400485 to 25401012 527 CpG island CpG island 11315
Tssr16711 2 25400545 to 25400557 12 + TSS region transcription start site region 16711
Cpgi11316 2 25402852 to 25403800 948 CpG island CpG island 11316
Tssr16712 2 25403044 to 25403115 71 + TSS region transcription start site region 16712
Npdc1 2 25403050 to 25409494 6444 + protein coding gene neural proliferation, differentiation and control 1
Tssr16713 2 25403128 to 25403200 72 + TSS region transcription start site region 16713
Adip22 2 25418039 to 25418228 189 QTL adiposity 22
D2Mit293 2 25418039 to 25418228 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 293
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
Tssr16714 2 25423234 to 25423250 16 + TSS region transcription start site region 16714
Fut7 2 25423267 to 25426374 3107 + protein coding gene fucosyltransferase 7
Tssr16715 2 25424632 to 25424673 41 + TSS region transcription start site region 16715
Cpgi11317 2 25425266 to 25425856 590 CpG island CpG island 11317
Cpgi11318 2 25428172 to 25429692 1520 CpG island CpG island 11318
Tssr16716 2 25428566 to 25428576 10 + TSS region transcription start site region 16716
Tssr16717 2 25428591 to 25428605 14 + TSS region transcription start site region 16717
Tssr16718 2 25428644 to 25428686 42 + TSS region transcription start site region 16718
Tssr16719 2 25428699 to 25428715 16 + TSS region transcription start site region 16719
Abca2 2 25428703 to 25448540 19837 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 2
Tssr16720 2 25428717 to 25428730 13 + TSS region transcription start site region 16720
Tssr431 2 25429386 to 25429396 10 + TSS region transcription start site region 431
Tssr16721 2 25431238 to 25431254 16 + TSS region transcription start site region 16721
Cpgi11319 2 25433056 to 25433371 315 CpG island CpG island 11319
Cpgi11320 2 25441267 to 25441464 197 CpG island CpG island 11320
Mir3087 2 25442779 to 25442834 55 + miRNA gene microRNA 3087
Paxx 2 25455141 to 25461094 5953 - protein coding gene non-homologous end joining factor
Tssr16722 2 25456830 to 25456850 20 + TSS region transcription start site region 16722
Clic3 2 25456843 to 25458772 1929 + protein coding gene chloride intracellular channel 3
Tssr16723 2 25457632 to 25457670 38 + TSS region transcription start site region 16723
Cpgi11321 2 25460550 to 25461304 754 CpG island CpG island 11321
Tssr22977 2 25460906 to 25460931 25 - TSS region transcription start site region 22977
Tssr22978 2 25460933 to 25460959 26 - TSS region transcription start site region 22978
Tssr22979 2 25460970 to 25460983 13 - TSS region transcription start site region 22979
Tssr22980 2 25460993 to 25461004 11 - TSS region transcription start site region 22980
Tssr22981 2 25461021 to 25461040 19 - TSS region transcription start site region 22981
Tssr22982 2 25461069 to 25461080 11 - TSS region transcription start site region 22982
Tssr22983 2 25461107 to 25461112 5 - TSS region transcription start site region 22983
Tssr22984 2 25461118 to 25461129 11 - TSS region transcription start site region 22984
Tssr16724 2 25461201 to 25461221 20 + TSS region transcription start site region 16724
Tssr22985 2 25465882 to 25465894 12 - TSS region transcription start site region 22985
Ptgds 2 25466709 to 25470046 3337 - protein coding gene prostaglandin D2 synthase (brain)
Tssr22986 2 25466805 to 25466820 15 - TSS region transcription start site region 22986
Tssr16725 2 25467309 to 25467317 8 + TSS region transcription start site region 16725
Tssr16726 2 25467826 to 25467835 9 + TSS region transcription start site region 16726
Tssr22987 2 25467838 to 25467845 7 - TSS region transcription start site region 22987
Tssr16727 2 25467875 to 25467897 22 + TSS region transcription start site region 16727
Tssr22988 2 25467908 to 25467927 19 - TSS region transcription start site region 22988
Tssr22989 2 25468089 to 25468110 21 - TSS region transcription start site region 22989
Tssr16728 2 25468098 to 25468113 15 + TSS region transcription start site region 16728