Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25022603-25245396

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pnpla7 2 24976033 to 25054057 78024 + protein coding gene patatin-like phospholipase domain containing 7
Tssr16647 2 25025610 to 25025615 5 + TSS region transcription start site region 16647
Gm24875 2 25031350 to 25031453 103 - snRNA gene predicted gene, 24875
Tssr428 2 25047971 to 25047982 11 + TSS region transcription start site region 428
Tssr16648 2 25051642 to 25051684 42 + TSS region transcription start site region 16648
Cpgi11292 2 25054194 to 25055023 829 CpG island CpG island 11292
Nsmf 2 25054370 to 25062881 8511 + protein coding gene NMDA receptor synaptonuclear signaling and neuronal migration factor
Tssr16649 2 25054374 to 25054391 17 + TSS region transcription start site region 16649
Tssr16650 2 25054396 to 25054440 44 + TSS region transcription start site region 16650
Tssr16651 2 25054445 to 25054456 11 + TSS region transcription start site region 16651
Tssr16652 2 25054472 to 25054483 11 + TSS region transcription start site region 16652
Tssr16653 2 25054497 to 25054529 32 + TSS region transcription start site region 16653
Gm24328 2 25055109 to 25055175 66 - miRNA gene predicted gene, 24328
Mir7664 2 25059811 to 25059873 62 + miRNA gene microRNA 7664
Tssr16654 2 25062719 to 25062728 9 + TSS region transcription start site region 16654
Tssr16655 2 25062811 to 25062825 14 + TSS region transcription start site region 16655
Gm39770 2 25070376 to 25072673 2297 - lncRNA gene predicted gene, 39770
Tssr429 2 25079177 to 25079198 21 + TSS region transcription start site region 429
Tssr22933 2 25080208 to 25080239 31 - TSS region transcription start site region 22933
Tssr16656 2 25080296 to 25080310 14 + TSS region transcription start site region 16656
Entpd8 2 25080304 to 25085716 5412 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 8
Tssr16657 2 25080316 to 25080343 27 + TSS region transcription start site region 16657
Tssr16658 2 25080481 to 25080492 11 + TSS region transcription start site region 16658
Tssr16659 2 25080497 to 25080530 33 + TSS region transcription start site region 16659
Noxa1 2 25085667 to 25095149 9482 - protein coding gene NADPH oxidase activator 1
Cpgi11293 2 25094736 to 25094982 246 CpG island CpG island 11293
Tssr22934 2 25095080 to 25095092 12 - TSS region transcription start site region 22934
Tssr22935 2 25095095 to 25095110 15 - TSS region transcription start site region 22935
Tssr22936 2 25095125 to 25095138 13 - TSS region transcription start site region 22936
Tssr22937 2 25095152 to 25095169 17 - TSS region transcription start site region 22937
Gm13387 2 25122603 to 25145396 22793 - lincRNA gene predicted gene 13387
Cpgi11294 2 25167922 to 25168445 523 CpG island CpG island 11294
Cpgi11295 2 25180372 to 25182057 1685 CpG island CpG island 11295
Tssr16660 2 25180737 to 25180764 27 + TSS region transcription start site region 16660
Nrarp 2 25180758 to 25183339 2581 + protein coding gene Notch-regulated ankyrin repeat protein
Gm38287 2 25180781 to 25183339 2558 - antisense lncRNA gene predicted gene, 38287
Cpgi11296 2 25185577 to 25186517 940 CpG island CpG island 11296
Tor4a 2 25192966 to 25196886 3920 - protein coding gene torsin family 4, member A
Tssr16661 2 25194806 to 25194820 14 + TSS region transcription start site region 16661
Cpgi11297 2 25194849 to 25195980 1131 CpG island CpG island 11297
Tssr22938 2 25196579 to 25196604 25 - TSS region transcription start site region 22938
Tssr22939 2 25196607 to 25196640 33 - TSS region transcription start site region 22939
Tssr22940 2 25196708 to 25196715 7 - TSS region transcription start site region 22940
Tssr22941 2 25196742 to 25196755 13 - TSS region transcription start site region 22941
Tssr22942 2 25196759 to 25196823 64 - TSS region transcription start site region 22942
Nelfb 2 25199712 to 25211489 11777 - protein coding gene negative elongation factor complex member B
Gm22572 2 25208623 to 25208727 104 + snRNA gene predicted gene, 22572
Cpgi11298 2 25210708 to 25211653 945 CpG island CpG island 11298
Tssr22943 2 25211344 to 25211357 13 - TSS region transcription start site region 22943
Tssr22944 2 25211367 to 25211436 69 - TSS region transcription start site region 22944
Stpg3 2 25212207 to 25214637 2430 - protein coding gene sperm tail PG rich repeat containing 3
Cpgi11299 2 25213308 to 25213697 389 CpG island CpG island 11299
Tssr22945 2 25214581 to 25214608 27 - TSS region transcription start site region 22945
Tssr22946 2 25214616 to 25214623 7 - TSS region transcription start site region 22946
Tssr22947 2 25214628 to 25214633 5 - TSS region transcription start site region 22947
Tssr16662 2 25214691 to 25214700 9 + TSS region transcription start site region 16662
Tssr16663 2 25214706 to 25214755 49 + TSS region transcription start site region 16663
Tssr22948 2 25218647 to 25218674 27 - TSS region transcription start site region 22948
Tssr16664 2 25218741 to 25218750 9 + TSS region transcription start site region 16664
Fam166a 2 25218745 to 25222280 3535 + protein coding gene family with sequence similarity 166, member A
Tssr16665 2 25218752 to 25218799 47 + TSS region transcription start site region 16665
Tubb4b 2 25222160 to 25224702 2542 - protein coding gene tubulin, beta 4B class IVB
Cpgi11300 2 25223768 to 25225274 1506 CpG island CpG island 11300
Tssr22949 2 25224230 to 25224268 38 - TSS region transcription start site region 22949
Tssr22950 2 25224653 to 25224659 6 - TSS region transcription start site region 22950
Tssr16666 2 25225043 to 25225071 28 + TSS region transcription start site region 16666
Tssr16667 2 25225363 to 25225375 12 + TSS region transcription start site region 16667
Tssr16668 2 25225416 to 25225431 15 + TSS region transcription start site region 16668
Tssr22951 2 25228420 to 25228459 39 - TSS region transcription start site region 22951
Slc34a3 2 25228897 to 25234271 5374 - protein coding gene solute carrier family 34 (sodium phosphate), member 3
Tssr22952 2 25234177 to 25234192 15 - TSS region transcription start site region 22952
Tssr22953 2 25234203 to 25234223 20 - TSS region transcription start site region 22953
Tssr22954 2 25234227 to 25234251 24 - TSS region transcription start site region 22954
Rnf224 2 25234476 to 25236787 2311 - protein coding gene ring finger protein 224
Cysrt1 2 25238819 to 25239897 1078 - protein coding gene cysteine rich tail 1
Tssr22955 2 25239850 to 25239870 20 - TSS region transcription start site region 22955
Cpgi11301 2 25240769 to 25241137 368 CpG island CpG island 11301
Tssr16669 2 25241579 to 25241596 17 + TSS region transcription start site region 16669
Cpgi11302 2 25241664 to 25243085 1421 CpG island CpG island 11302
Tssr16670 2 25241903 to 25241926 23 + TSS region transcription start site region 16670
Tssr16671 2 25242196 to 25242207 11 + TSS region transcription start site region 16671
Tssr16672 2 25242227 to 25242284 57 + TSS region transcription start site region 16672
Tssr16673 2 25242285 to 25242379 94 + TSS region transcription start site region 16673
Tssr16674 2 25242397 to 25242408 11 + TSS region transcription start site region 16674
Rnf208 2 25242929 to 25244261 1332 + protein coding gene ring finger protein 208
Tssr16675 2 25243059 to 25243087 28 + TSS region transcription start site region 16675
Tssr16676 2 25243238 to 25243249 11 + TSS region transcription start site region 16676
Ndor1 2 25244813 to 25255443 10630 - protein coding gene NADPH dependent diflavin oxidoreductase 1