Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:24383201-25083209

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psd4 2 24367559 to 24409870 42311 + protein coding gene pleckstrin and Sec7 domain containing 4
Tssr16619 2 24385131 to 24385167 36 + TSS region transcription start site region 16619
Tssr22906 2 24385184 to 24385226 42 - TSS region transcription start site region 22906
Tssr16620 2 24385313 to 24385352 39 + TSS region transcription start site region 16620
Tssr16621 2 24385353 to 24385358 5 + TSS region transcription start site region 16621
Tssr16622 2 24386333 to 24386369 36 + TSS region transcription start site region 16622
Tssr16623 2 24386375 to 24386386 11 + TSS region transcription start site region 16623
Cpgi11280 2 24386516 to 24386937 421 CpG island CpG island 11280
Tssr16624 2 24386533 to 24386542 9 + TSS region transcription start site region 16624
Tssr16625 2 24386604 to 24386628 24 + TSS region transcription start site region 16625
Tssr16626 2 24386638 to 24386652 14 + TSS region transcription start site region 16626
Tssr16627 2 24394790 to 24394808 18 + TSS region transcription start site region 16627
Cpgi11281 2 24405683 to 24405899 216 CpG island CpG island 11281
Pax8 2 24420560 to 24475599 55039 - protein coding gene paired box 8
Tssr22907 2 24422999 to 24423010 11 - TSS region transcription start site region 22907
Tssr22908 2 24434102 to 24434105 3 - TSS region transcription start site region 22908
Gm13415 2 24449926 to 24465936 16010 + lncRNA gene predicted gene 13415
Tssr22909 2 24472595 to 24472601 6 - TSS region transcription start site region 22909
Cpgi11282 2 24473968 to 24474899 931 CpG island CpG island 11282
Cpgi11283 2 24474981 to 24475237 256 CpG island CpG island 11283
Tssr22910 2 24475119 to 24475122 3 - TSS region transcription start site region 22910
Tssr22911 2 24475559 to 24475562 3 - TSS region transcription start site region 22911
Tssr22912 2 24475565 to 24475580 15 - TSS region transcription start site region 22912
Tssr22913 2 24475596 to 24475605 9 - TSS region transcription start site region 22913
Tssr16628 2 24481336 to 24481364 28 + TSS region transcription start site region 16628
Gm27193 2 24483495 to 24484080 585 + pseudogene predicted gene 27193
Gm13418 2 24494068 to 24495011 943 + pseudogene predicted gene 13418
Cpgi11284 2 24521450 to 24521774 324 CpG island CpG island 11284
Gm39769 2 24522235 to 24585542 63307 + lncRNA gene predicted gene, 39769
Gm13417 2 24545492 to 24566697 21205 - lincRNA gene predicted gene 13417
Tssr16629 2 24563102 to 24563148 46 + TSS region transcription start site region 16629
Gm38383 2 24588566 to 24591225 2659 + unclassified gene predicted gene, 38383
Gm13416 2 24592902 to 24594513 1611 - pseudogene predicted gene 13416
Tssr22914 2 24593078 to 24593096 18 - TSS region transcription start site region 22914
Gm25455 2 24601365 to 24601689 324 + unclassified non-coding RNA gene predicted gene, 25455
Cacna1b 2 24603887 to 24763152 159265 - protein coding gene calcium channel, voltage-dependent, N type, alpha 1B subunit
Tssr22915 2 24608101 to 24608114 13 - TSS region transcription start site region 22915
Gm13459 2 24674701 to 24675346 645 + pseudogene predicted gene 13459
Cpgi11285 2 24678864 to 24679542 678 CpG island CpG island 11285
Tssr22916 2 24733201 to 24733209 8 - TSS region transcription start site region 22916
Cpgi11286 2 24761654 to 24763612 1958 CpG island CpG island 11286
Tssr22917 2 24763136 to 24763153 17 - TSS region transcription start site region 22917
Tssr22918 2 24763156 to 24763178 22 - TSS region transcription start site region 22918
Tssr22919 2 24763182 to 24763196 14 - TSS region transcription start site region 22919
Fcsa5 2 24789103 to 24789249 146 QTL femoral cross-sectional area 5
D2Mit81 2 24789103 to 24789249 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 81
Cia25 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 25
Cia24 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 24
Ehmt1 2 24790769 to 24919643 128874 - protein coding gene euchromatic histone methyltransferase 1
Tssr22920 2 24818990 to 24819001 11 - TSS region transcription start site region 22920
Tssr22921 2 24819036 to 24819061 25 - TSS region transcription start site region 22921
Tssr22922 2 24819094 to 24819114 20 - TSS region transcription start site region 22922
Tssr427 2 24819203 to 24819230 27 - TSS region transcription start site region 427
Tssr22923 2 24834579 to 24834584 5 - TSS region transcription start site region 22923
Gm38147 2 24874532 to 24876329 1797 - unclassified gene predicted gene, 38147
Gm37139 2 24889448 to 24893866 4418 - unclassified gene predicted gene, 37139
Cpgi11287 2 24918770 to 24919990 1220 CpG island CpG island 11287
Tssr22924 2 24919572 to 24919616 44 - TSS region transcription start site region 22924
Tssr16630 2 24919752 to 24919783 31 + TSS region transcription start site region 16630
Tssr16631 2 24925351 to 24925357 6 + TSS region transcription start site region 16631
Arrdc1 2 24925352 to 24935252 9900 - protein coding gene arrestin domain containing 1
Tssr22925 2 24927725 to 24927729 4 - TSS region transcription start site region 22925
Cpgi11288 2 24934653 to 24935867 1214 CpG island CpG island 11288
Tssr16632 2 24934848 to 24934881 33 + TSS region transcription start site region 16632
Tssr22926 2 24935119 to 24935137 18 - TSS region transcription start site region 22926
Tssr22927 2 24935148 to 24935215 67 - TSS region transcription start site region 22927
Gm22875 2 24936831 to 24936956 125 + miRNA gene predicted gene, 22875
Cpgi11289 2 24949165 to 24950614 1449 CpG island CpG island 11289
Tssr16633 2 24949747 to 24949801 54 + TSS region transcription start site region 16633
Zmynd19 2 24949777 to 24960870 11093 + protein coding gene zinc finger, MYND domain containing 19
Cpgi11290 2 24962243 to 24962740 497 CpG island CpG island 11290
Dph7 2 24962400 to 24972163 9763 + protein coding gene diphthamine biosynethesis 7
Tssr16634 2 24962418 to 24962473 55 + TSS region transcription start site region 16634
Mrpl41 2 24974117 to 24975098 981 - protein coding gene mitochondrial ribosomal protein L41
Cpgi11291 2 24974612 to 24975958 1346 CpG island CpG island 11291
Tssr22928 2 24974991 to 24975071 80 - TSS region transcription start site region 22928
Tssr22929 2 24975084 to 24975095 11 - TSS region transcription start site region 22929
Tssr16635 2 24975191 to 24975219 28 + TSS region transcription start site region 16635
Tssr16636 2 24975223 to 24975236 13 + TSS region transcription start site region 16636
Tssr16637 2 24975308 to 24975320 12 + TSS region transcription start site region 16637
Tssr16638 2 24975336 to 24975346 10 + TSS region transcription start site region 16638
Tssr22930 2 24975831 to 24975839 8 - TSS region transcription start site region 22930
Tssr22931 2 24975849 to 24975857 8 - TSS region transcription start site region 22931
Tssr22932 2 24975878 to 24975894 16 - TSS region transcription start site region 22932
Tssr16639 2 24976027 to 24976043 16 + TSS region transcription start site region 16639
Pnpla7 2 24976033 to 25054057 78024 + protein coding gene patatin-like phospholipase domain containing 7
Tssr16640 2 24976046 to 24976110 64 + TSS region transcription start site region 16640
Tssr16641 2 24976117 to 24976140 23 + TSS region transcription start site region 16641
Tssr16642 2 24976180 to 24976192 12 + TSS region transcription start site region 16642
Tssr16643 2 24977921 to 24977931 10 + TSS region transcription start site region 16643
Tssr16644 2 24983676 to 24983685 9 + TSS region transcription start site region 16644
Gm13370 2 24985984 to 24986466 482 + pseudogene predicted gene 13370
Tssr16645 2 24992632 to 24992651 19 + TSS region transcription start site region 16645
Gm13369 2 24993357 to 24994343 986 - pseudogene predicted gene 13369
Tssr16646 2 24994385 to 24994394 9 + TSS region transcription start site region 16646
Gm25518 2 25006152 to 25006258 106 - snRNA gene predicted gene, 25518
Tssr16647 2 25025610 to 25025615 5 + TSS region transcription start site region 16647
Gm24875 2 25031350 to 25031453 103 - snRNA gene predicted gene, 24875
Tssr428 2 25047971 to 25047982 11 + TSS region transcription start site region 428
Tssr16648 2 25051642 to 25051684 42 + TSS region transcription start site region 16648
Cpgi11292 2 25054194 to 25055023 829 CpG island CpG island 11292
Nsmf 2 25054370 to 25062881 8511 + protein coding gene NMDA receptor synaptonuclear signaling and neuronal migration factor
Tssr16649 2 25054374 to 25054391 17 + TSS region transcription start site region 16649
Tssr16650 2 25054396 to 25054440 44 + TSS region transcription start site region 16650
Tssr16651 2 25054445 to 25054456 11 + TSS region transcription start site region 16651
Tssr16652 2 25054472 to 25054483 11 + TSS region transcription start site region 16652
Tssr16653 2 25054497 to 25054529 32 + TSS region transcription start site region 16653
Gm24328 2 25055109 to 25055175 66 - miRNA gene predicted gene, 24328
Mir7664 2 25059811 to 25059873 62 + miRNA gene microRNA 7664
Tssr16654 2 25062719 to 25062728 9 + TSS region transcription start site region 16654
Tssr16655 2 25062811 to 25062825 14 + TSS region transcription start site region 16655
Gm39770 2 25070376 to 25072673 2297 - lncRNA gene predicted gene, 39770
Tssr429 2 25079177 to 25079198 21 + TSS region transcription start site region 429
Tssr22933 2 25080208 to 25080239 31 - TSS region transcription start site region 22933
Tssr16656 2 25080296 to 25080310 14 + TSS region transcription start site region 16656
Entpd8 2 25080304 to 25085716 5412 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 8
Tssr16657 2 25080316 to 25080343 27 + TSS region transcription start site region 16657
Tssr16658 2 25080481 to 25080492 11 + TSS region transcription start site region 16658
Tssr16659 2 25080497 to 25080530 33 + TSS region transcription start site region 16659