Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:23298053-24348227

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11277 2 23321036 to 23321584 548 CpG island CpG island 11277
Nxph2 2 23321246 to 23401973 80727 + protein coding gene neurexophilin 2
Gm34769 2 23353095 to 23367102 14007 - lncRNA gene predicted gene, 34769
A330106F07Rik 2 23492927 to 23494447 1520 unclassified gene RIKEN cDNA A330106F07 gene
Gm38309 2 23492931 to 23494448 1517 + unclassified gene predicted gene, 38309
Tssr22893 2 23496396 to 23496400 4 - TSS region transcription start site region 22893
Spopl 2 23506220 to 23572106 65886 - protein coding gene speckle-type POZ protein-like
Gm13331 2 23508860 to 23509307 447 + pseudogene predicted gene 13331
Tssr22894 2 23521985 to 23522000 15 - TSS region transcription start site region 22894
Tssr22895 2 23524068 to 23524079 11 - TSS region transcription start site region 22895
Cpgi11278 2 23571506 to 23572170 664 CpG island CpG island 11278
Tssr22896 2 23572038 to 23572112 74 - TSS region transcription start site region 22896
Mnctp2 2 23572688 to 23572688 0 QTL percent monocytes 2
Sh3d2c-ps1 2 23680218 to 23681121 903 + pseudogene SH3 domain protein 2C, pseudogene 1
Gm26323 2 23823053 to 23823227 174 + unclassified non-coding RNA gene predicted gene, 26323
Gm13392 2 23908441 to 23908590 149 + pseudogene predicted gene 13392
Tssr22897 2 23961345 to 23961346 1 - TSS region transcription start site region 22897
Hnmt 2 24002910 to 24049394 46484 - protein coding gene histamine N-methyltransferase
Tssr22898 2 24048828 to 24048846 18 - TSS region transcription start site region 22898
Tssr22899 2 24048857 to 24048868 11 - TSS region transcription start site region 22899
Tssr22900 2 24049356 to 24049380 24 - TSS region transcription start site region 22900
Tssr22901 2 24049389 to 24049400 11 - TSS region transcription start site region 22901
Tssr22902 2 24049408 to 24049419 11 - TSS region transcription start site region 22902
Tbpl2 2 24071721 to 24096595 24874 - protein coding gene TATA box binding protein like 2
Tssr16553 2 24153148 to 24153165 17 + TSS region transcription start site region 16553
Il1f8 2 24153172 to 24160103 6931 + protein coding gene interleukin 1 family, member 8
Tssr16554 2 24153173 to 24153197 24 + TSS region transcription start site region 16554
2310066D07Rik 2 24171586 to 24172072 486 unclassified gene RIKEN cDNA 2310066D07 gene
Gm13410 2 24178834 to 24180314 1480 + pseudogene predicted gene 13410
Tssr16555 2 24186313 to 24186322 9 + TSS region transcription start site region 16555
Tssr16556 2 24186393 to 24186402 9 + TSS region transcription start site region 16556
Tssr16557 2 24186435 to 24186451 16 + TSS region transcription start site region 16557
Tssr16558 2 24186453 to 24186464 11 + TSS region transcription start site region 16558
Tssr16559 2 24186469 to 24186484 15 + TSS region transcription start site region 16559
Il1f9 2 24186476 to 24193567 7091 + protein coding gene interleukin 1 family, member 9
Tssr16560 2 24186505 to 24186512 7 + TSS region transcription start site region 16560
Tssr16561 2 24186770 to 24186793 23 + TSS region transcription start site region 16561
Tssr16562 2 24214770 to 24214773 3 + TSS region transcription start site region 16562
Tssr16563 2 24215330 to 24215365 35 + TSS region transcription start site region 16563
Il1f6 2 24215417 to 24225701 10284 + protein coding gene interleukin 1 family, member 6
Tssr16564 2 24215468 to 24215474 6 + TSS region transcription start site region 16564
Gm37703 2 24231868 to 24233651 1783 + unclassified gene predicted gene, 37703
Gm13409 2 24261830 to 24266338 4508 - pseudogene predicted gene 13409
Tssr16565 2 24263455 to 24263456 1 + TSS region transcription start site region 16565
Tssr16566 2 24276909 to 24276941 32 + TSS region transcription start site region 16566
Il1f5 2 24276954 to 24282432 5478 + protein coding gene interleukin 1 family, member 5 (delta)
Tssr16567 2 24277263 to 24277277 14 + TSS region transcription start site region 16567
Tssr16568 2 24287078 to 24287084 6 + TSS region transcription start site region 16568
Il1f10 2 24291196 to 24293820 2624 + protein coding gene interleukin 1 family, member 10
Tssr16569 2 24305085 to 24305101 16 + TSS region transcription start site region 16569
Tssr16570 2 24316524 to 24316532 8 + TSS region transcription start site region 16570
Tssr16571 2 24321215 to 24321223 8 + TSS region transcription start site region 16571
Tssr16572 2 24322386 to 24322399 13 + TSS region transcription start site region 16572
Gm13411 2 24322424 to 24322956 532 + lincRNA gene predicted gene 13411
D2Mit292 2 24334620 to 24334754 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 292
Tssr16573 2 24336714 to 24336722 8 + TSS region transcription start site region 16573
Tssr16574 2 24336846 to 24336867 21 + TSS region transcription start site region 16574
Il1rn 2 24336860 to 24351491 14631 + protein coding gene interleukin 1 receptor antagonist
Tssr16575 2 24336882 to 24336893 11 + TSS region transcription start site region 16575
Tssr16576 2 24336904 to 24336925 21 + TSS region transcription start site region 16576
Tssr16577 2 24336933 to 24336945 12 + TSS region transcription start site region 16577
Tssr16578 2 24345261 to 24345272 11 + TSS region transcription start site region 16578
Tssr16579 2 24345282 to 24345295 13 + TSS region transcription start site region 16579
Tssr16580 2 24345305 to 24345347 42 + TSS region transcription start site region 16580
Tssr16581 2 24345407 to 24345422 15 + TSS region transcription start site region 16581
Tssr16582 2 24347454 to 24347512 58 + TSS region transcription start site region 16582
Tssr16583 2 24347703 to 24347743 40 + TSS region transcription start site region 16583
Dssc2 2 148858457 to 24334620 -124523837 QTL dextran sodium sulfate induced colitis QTL2