Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:23074623-25624654

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550 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acbd5 2 23067689 to 23114513 46824 + protein coding gene acyl-Coenzyme A binding domain containing 5
Tssr16538 2 23098089 to 23098093 4 + TSS region transcription start site region 16538
D2Mit465 2 23109782 to 23109908 126 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 465
Mastl 2 23116539 to 23156024 39485 - protein coding gene microtubule associated serine/threonine kinase-like
Tssr425 2 23138478 to 23138481 3 + TSS region transcription start site region 425
Tssr16539 2 23155509 to 23155530 21 + TSS region transcription start site region 16539
Cpgi11275 2 23155539 to 23156865 1326 CpG island CpG island 11275
Tssr22892 2 23155864 to 23155925 61 - TSS region transcription start site region 22892
Tssr16540 2 23155954 to 23155980 26 + TSS region transcription start site region 16540
Tssr16541 2 23156013 to 23156023 10 + TSS region transcription start site region 16541
Tssr16542 2 23156173 to 23156188 15 + TSS region transcription start site region 16542
Yme1l1 2 23156369 to 23199260 42891 + protein coding gene YME1-like 1 (S. cerevisiae)
Tssr16543 2 23156508 to 23156527 19 + TSS region transcription start site region 16543
Tssr16544 2 23187791 to 23187804 13 + TSS region transcription start site region 16544
Tssr16545 2 23191006 to 23191024 18 + TSS region transcription start site region 16545
Tssr16546 2 23196451 to 23196463 12 + TSS region transcription start site region 16546
Tssr16547 2 23197391 to 23197395 4 + TSS region transcription start site region 16547
Tssr16548 2 23197812 to 23197829 17 + TSS region transcription start site region 16548
Tssr16549 2 23201936 to 23201942 6 + TSS region transcription start site region 16549
Gm13423 2 23202033 to 23202910 877 + pseudogene predicted gene 13423
Tssr16550 2 23207458 to 23207465 7 + TSS region transcription start site region 16550
Tssr16551 2 23207470 to 23207493 23 + TSS region transcription start site region 16551
4931423N10Rik 2 23207476 to 23267129 59653 + protein coding gene RIKEN cDNA 4931423N10 gene
Cpgi11276 2 23234215 to 23234731 516 CpG island CpG island 11276
Gm13422 2 23235236 to 23235739 503 + pseudogene predicted gene 13422
Tssr426 2 23247283 to 23247285 2 + TSS region transcription start site region 426
Tssr16552 2 23259986 to 23259990 4 + TSS region transcription start site region 16552
Cpgi11277 2 23321036 to 23321584 548 CpG island CpG island 11277
Nxph2 2 23321246 to 23401973 80727 + protein coding gene neurexophilin 2
Gm34769 2 23353095 to 23367102 14007 - lncRNA gene predicted gene, 34769
A330106F07Rik 2 23492927 to 23494447 1520 unclassified gene RIKEN cDNA A330106F07 gene
Gm38309 2 23492931 to 23494448 1517 + unclassified gene predicted gene, 38309
Tssr22893 2 23496396 to 23496400 4 - TSS region transcription start site region 22893
Spopl 2 23506220 to 23572106 65886 - protein coding gene speckle-type POZ protein-like
Gm13331 2 23508860 to 23509307 447 + pseudogene predicted gene 13331
Tssr22894 2 23521985 to 23522000 15 - TSS region transcription start site region 22894
Tssr22895 2 23524068 to 23524079 11 - TSS region transcription start site region 22895
Cpgi11278 2 23571506 to 23572170 664 CpG island CpG island 11278
Tssr22896 2 23572038 to 23572112 74 - TSS region transcription start site region 22896
Mnctp2 2 23572688 to 23572688 0 QTL percent monocytes 2
Sh3d2c-ps1 2 23680218 to 23681121 903 + pseudogene SH3 domain protein 2C, pseudogene 1
Gm26323 2 23823053 to 23823227 174 + unclassified non-coding RNA gene predicted gene, 26323
Gm13392 2 23908441 to 23908590 149 + pseudogene predicted gene 13392
Tssr22897 2 23961345 to 23961346 1 - TSS region transcription start site region 22897
Hnmt 2 24002910 to 24049394 46484 - protein coding gene histamine N-methyltransferase
Tssr22898 2 24048828 to 24048846 18 - TSS region transcription start site region 22898
Tssr22899 2 24048857 to 24048868 11 - TSS region transcription start site region 22899
Tssr22900 2 24049356 to 24049380 24 - TSS region transcription start site region 22900
Tssr22901 2 24049389 to 24049400 11 - TSS region transcription start site region 22901
Tssr22902 2 24049408 to 24049419 11 - TSS region transcription start site region 22902
Tbpl2 2 24071721 to 24096595 24874 - protein coding gene TATA box binding protein like 2
Tssr16553 2 24153148 to 24153165 17 + TSS region transcription start site region 16553
Il1f8 2 24153172 to 24160103 6931 + protein coding gene interleukin 1 family, member 8
Tssr16554 2 24153173 to 24153197 24 + TSS region transcription start site region 16554
2310066D07Rik 2 24171586 to 24172072 486 unclassified gene RIKEN cDNA 2310066D07 gene
Gm13410 2 24178834 to 24180314 1480 + pseudogene predicted gene 13410
Tssr16555 2 24186313 to 24186322 9 + TSS region transcription start site region 16555
Tssr16556 2 24186393 to 24186402 9 + TSS region transcription start site region 16556
Tssr16557 2 24186435 to 24186451 16 + TSS region transcription start site region 16557
Tssr16558 2 24186453 to 24186464 11 + TSS region transcription start site region 16558
Tssr16559 2 24186469 to 24186484 15 + TSS region transcription start site region 16559
Il1f9 2 24186476 to 24193567 7091 + protein coding gene interleukin 1 family, member 9
Tssr16560 2 24186505 to 24186512 7 + TSS region transcription start site region 16560
Tssr16561 2 24186770 to 24186793 23 + TSS region transcription start site region 16561
Tssr16562 2 24214770 to 24214773 3 + TSS region transcription start site region 16562
Tssr16563 2 24215330 to 24215365 35 + TSS region transcription start site region 16563
Il1f6 2 24215417 to 24225701 10284 + protein coding gene interleukin 1 family, member 6
Tssr16564 2 24215468 to 24215474 6 + TSS region transcription start site region 16564
Gm37703 2 24231868 to 24233651 1783 + unclassified gene predicted gene, 37703
Gm13409 2 24261830 to 24266338 4508 - pseudogene predicted gene 13409
Tssr16565 2 24263455 to 24263456 1 + TSS region transcription start site region 16565
Tssr16566 2 24276909 to 24276941 32 + TSS region transcription start site region 16566
Il1f5 2 24276954 to 24282432 5478 + protein coding gene interleukin 1 family, member 5 (delta)
Tssr16567 2 24277263 to 24277277 14 + TSS region transcription start site region 16567
Tssr16568 2 24287078 to 24287084 6 + TSS region transcription start site region 16568
Il1f10 2 24291196 to 24293820 2624 + protein coding gene interleukin 1 family, member 10
Tssr16569 2 24305085 to 24305101 16 + TSS region transcription start site region 16569
Tssr16570 2 24316524 to 24316532 8 + TSS region transcription start site region 16570
Tssr16571 2 24321215 to 24321223 8 + TSS region transcription start site region 16571
Tssr16572 2 24322386 to 24322399 13 + TSS region transcription start site region 16572
Gm13411 2 24322424 to 24322956 532 + lincRNA gene predicted gene 13411
D2Mit292 2 24334620 to 24334754 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 292
Tssr16573 2 24336714 to 24336722 8 + TSS region transcription start site region 16573
Tssr16574 2 24336846 to 24336867 21 + TSS region transcription start site region 16574
Il1rn 2 24336860 to 24351491 14631 + protein coding gene interleukin 1 receptor antagonist
Tssr16575 2 24336882 to 24336893 11 + TSS region transcription start site region 16575
Tssr16576 2 24336904 to 24336925 21 + TSS region transcription start site region 16576
Tssr16577 2 24336933 to 24336945 12 + TSS region transcription start site region 16577
Tssr16578 2 24345261 to 24345272 11 + TSS region transcription start site region 16578
Tssr16579 2 24345282 to 24345295 13 + TSS region transcription start site region 16579
Tssr16580 2 24345305 to 24345347 42 + TSS region transcription start site region 16580
Tssr16581 2 24345407 to 24345422 15 + TSS region transcription start site region 16581
Tssr16582 2 24347454 to 24347512 58 + TSS region transcription start site region 16582
Tssr16583 2 24347703 to 24347743 40 + TSS region transcription start site region 16583
Tssr16584 2 24348570 to 24348574 4 + TSS region transcription start site region 16584
Tssr16585 2 24349408 to 24349422 14 + TSS region transcription start site region 16585
Tssr16586 2 24349457 to 24349466 9 + TSS region transcription start site region 16586
Tssr16587 2 24349485 to 24349496 11 + TSS region transcription start site region 16587
Tssr16588 2 24349502 to 24349508 6 + TSS region transcription start site region 16588
Tssr16589 2 24349524 to 24349531 7 + TSS region transcription start site region 16589
Tssr16590 2 24349547 to 24349558 11 + TSS region transcription start site region 16590
Tssr22903 2 24349573 to 24349621 48 - TSS region transcription start site region 22903
Tssr16591 2 24349577 to 24349596 19 + TSS region transcription start site region 16591
Tssr16592 2 24349601 to 24349602 1 + TSS region transcription start site region 16592
Tssr16593 2 24349616 to 24349630 14 + TSS region transcription start site region 16593
Tssr22904 2 24349623 to 24349654 31 - TSS region transcription start site region 22904
Tssr16594 2 24349639 to 24349648 9 + TSS region transcription start site region 16594
Tssr16595 2 24349682 to 24349700 18 + TSS region transcription start site region 16595
Tssr16596 2 24349705 to 24349719 14 + TSS region transcription start site region 16596
Tssr16597 2 24349735 to 24349756 21 + TSS region transcription start site region 16597
Tssr16598 2 24349762 to 24349784 22 + TSS region transcription start site region 16598
Tssr16599 2 24349822 to 24349831 9 + TSS region transcription start site region 16599
Tssr16600 2 24349864 to 24349877 13 + TSS region transcription start site region 16600
Tssr16601 2 24349879 to 24349886 7 + TSS region transcription start site region 16601
Tssr16602 2 24349896 to 24349910 14 + TSS region transcription start site region 16602
Tssr22905 2 24349912 to 24349948 36 - TSS region transcription start site region 22905
Tssr16603 2 24349916 to 24349927 11 + TSS region transcription start site region 16603
Tssr16604 2 24349960 to 24349971 11 + TSS region transcription start site region 16604
Tssr16605 2 24350117 to 24350128 11 + TSS region transcription start site region 16605
Tssr16606 2 24350300 to 24350303 3 + TSS region transcription start site region 16606
Tssr16607 2 24350318 to 24350327 9 + TSS region transcription start site region 16607
Tssr16608 2 24350351 to 24350354 3 + TSS region transcription start site region 16608
Tssr16609 2 24350367 to 24350374 7 + TSS region transcription start site region 16609
Tssr16610 2 24350376 to 24350383 7 + TSS region transcription start site region 16610
Tssr16611 2 24350420 to 24350427 7 + TSS region transcription start site region 16611
Tssr16612 2 24350449 to 24350460 11 + TSS region transcription start site region 16612
Tssr16613 2 24350988 to 24351029 41 + TSS region transcription start site region 16613
Tssr16614 2 24351045 to 24351056 11 + TSS region transcription start site region 16614
Tssr16615 2 24351061 to 24351074 13 + TSS region transcription start site region 16615
Tssr16616 2 24353357 to 24353362 5 + TSS region transcription start site region 16616
Cpgi11279 2 24367381 to 24367944 563 CpG island CpG island 11279
Psd4 2 24367559 to 24409870 42311 + protein coding gene pleckstrin and Sec7 domain containing 4
Tssr16617 2 24367565 to 24367620 55 + TSS region transcription start site region 16617
Tssr16618 2 24379121 to 24379124 3 + TSS region transcription start site region 16618
Tssr16619 2 24385131 to 24385167 36 + TSS region transcription start site region 16619
Tssr22906 2 24385184 to 24385226 42 - TSS region transcription start site region 22906
Tssr16620 2 24385313 to 24385352 39 + TSS region transcription start site region 16620
Tssr16621 2 24385353 to 24385358 5 + TSS region transcription start site region 16621
Tssr16622 2 24386333 to 24386369 36 + TSS region transcription start site region 16622
Tssr16623 2 24386375 to 24386386 11 + TSS region transcription start site region 16623
Cpgi11280 2 24386516 to 24386937 421 CpG island CpG island 11280
Tssr16624 2 24386533 to 24386542 9 + TSS region transcription start site region 16624
Tssr16625 2 24386604 to 24386628 24 + TSS region transcription start site region 16625
Tssr16626 2 24386638 to 24386652 14 + TSS region transcription start site region 16626
Tssr16627 2 24394790 to 24394808 18 + TSS region transcription start site region 16627
Cpgi11281 2 24405683 to 24405899 216 CpG island CpG island 11281
Pax8 2 24420560 to 24475599 55039 - protein coding gene paired box 8
Tssr22907 2 24422999 to 24423010 11 - TSS region transcription start site region 22907
Tssr22908 2 24434102 to 24434105 3 - TSS region transcription start site region 22908
Gm13415 2 24449926 to 24465936 16010 + lncRNA gene predicted gene 13415
Tssr22909 2 24472595 to 24472601 6 - TSS region transcription start site region 22909
Cpgi11282 2 24473968 to 24474899 931 CpG island CpG island 11282
Cpgi11283 2 24474981 to 24475237 256 CpG island CpG island 11283
Tssr22910 2 24475119 to 24475122 3 - TSS region transcription start site region 22910
Tssr22911 2 24475559 to 24475562 3 - TSS region transcription start site region 22911
Tssr22912 2 24475565 to 24475580 15 - TSS region transcription start site region 22912
Tssr22913 2 24475596 to 24475605 9 - TSS region transcription start site region 22913
Tssr16628 2 24481336 to 24481364 28 + TSS region transcription start site region 16628
Gm27193 2 24483495 to 24484080 585 + pseudogene predicted gene 27193
Gm13418 2 24494068 to 24495011 943 + pseudogene predicted gene 13418
Cpgi11284 2 24521450 to 24521774 324 CpG island CpG island 11284
Gm39769 2 24522235 to 24585542 63307 + lncRNA gene predicted gene, 39769
Gm13417 2 24545492 to 24566697 21205 - lincRNA gene predicted gene 13417
Tssr16629 2 24563102 to 24563148 46 + TSS region transcription start site region 16629
Gm38383 2 24588566 to 24591225 2659 + unclassified gene predicted gene, 38383
Gm13416 2 24592902 to 24594513 1611 - pseudogene predicted gene 13416
Tssr22914 2 24593078 to 24593096 18 - TSS region transcription start site region 22914
Gm25455 2 24601365 to 24601689 324 + unclassified non-coding RNA gene predicted gene, 25455
Cacna1b 2 24603887 to 24763152 159265 - protein coding gene calcium channel, voltage-dependent, N type, alpha 1B subunit
Tssr22915 2 24608101 to 24608114 13 - TSS region transcription start site region 22915
Gm13459 2 24674701 to 24675346 645 + pseudogene predicted gene 13459
Cpgi11285 2 24678864 to 24679542 678 CpG island CpG island 11285
Tssr22916 2 24733201 to 24733209 8 - TSS region transcription start site region 22916
Cpgi11286 2 24761654 to 24763612 1958 CpG island CpG island 11286
Tssr22917 2 24763136 to 24763153 17 - TSS region transcription start site region 22917
Tssr22918 2 24763156 to 24763178 22 - TSS region transcription start site region 22918
Tssr22919 2 24763182 to 24763196 14 - TSS region transcription start site region 22919
Fcsa5 2 24789103 to 24789249 146 QTL femoral cross-sectional area 5
D2Mit81 2 24789103 to 24789249 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 81
Cia24 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 24
Cia25 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 25
Ehmt1 2 24790769 to 24919643 128874 - protein coding gene euchromatic histone methyltransferase 1
Tssr22920 2 24818990 to 24819001 11 - TSS region transcription start site region 22920
Tssr22921 2 24819036 to 24819061 25 - TSS region transcription start site region 22921
Tssr22922 2 24819094 to 24819114 20 - TSS region transcription start site region 22922
Tssr427 2 24819203 to 24819230 27 - TSS region transcription start site region 427
Tssr22923 2 24834579 to 24834584 5 - TSS region transcription start site region 22923
Gm38147 2 24874532 to 24876329 1797 - unclassified gene predicted gene, 38147
Gm37139 2 24889448 to 24893866 4418 - unclassified gene predicted gene, 37139
Cpgi11287 2 24918770 to 24919990 1220 CpG island CpG island 11287
Tssr22924 2 24919572 to 24919616 44 - TSS region transcription start site region 22924
Tssr16630 2 24919752 to 24919783 31 + TSS region transcription start site region 16630
Tssr16631 2 24925351 to 24925357 6 + TSS region transcription start site region 16631
Arrdc1 2 24925352 to 24935252 9900 - protein coding gene arrestin domain containing 1
Tssr22925 2 24927725 to 24927729 4 - TSS region transcription start site region 22925
Cpgi11288 2 24934653 to 24935867 1214 CpG island CpG island 11288
Tssr16632 2 24934848 to 24934881 33 + TSS region transcription start site region 16632
Tssr22926 2 24935119 to 24935137 18 - TSS region transcription start site region 22926
Tssr22927 2 24935148 to 24935215 67 - TSS region transcription start site region 22927
Gm22875 2 24936831 to 24936956 125 + miRNA gene predicted gene, 22875