Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:22864986-23654990

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apbb1ip 2 22774094 to 22875653 101559 + protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
Tssr16520 2 22869377 to 22869381 4 + TSS region transcription start site region 16520
Tssr16521 2 22874840 to 22874852 12 + TSS region transcription start site region 16521
Tssr22871 2 22874980 to 22875004 24 - TSS region transcription start site region 22871
Tssr22872 2 22875028 to 22875048 20 - TSS region transcription start site region 22872
Cpgi11272 2 22895218 to 22896204 986 CpG island CpG island 11272
A130006I12Rik 2 22895321 to 22895736 415 - pseudogene RIKEN cDNA A130006I12 gene
Tssr16522 2 22895482 to 22895485 3 + TSS region transcription start site region 16522
Tssr22873 2 22895498 to 22895559 61 - TSS region transcription start site region 22873
Pdss1 2 22895522 to 22940266 44744 + protein coding gene prenyl (solanesyl) diphosphate synthase, subunit 1
Tssr16523 2 22895559 to 22895568 9 + TSS region transcription start site region 16523
Tssr16524 2 22895583 to 22895629 46 + TSS region transcription start site region 16524
Gm25544 2 22902388 to 22902507 119 + snoRNA gene predicted gene, 25544
Gm14441 2 22913293 to 22913832 539 - pseudogene predicted gene 14441
Tssr22874 2 22913876 to 22913883 7 - TSS region transcription start site region 22874
Tssr16525 2 22914663 to 22914682 19 + TSS region transcription start site region 16525
Tssr16526 2 22928557 to 22928562 5 + TSS region transcription start site region 16526
Abi1 2 22940073 to 23040241 100168 - protein coding gene abl-interactor 1
Tssr22875 2 22941899 to 22941949 50 - TSS region transcription start site region 22875
Tssr22876 2 22950688 to 22950707 19 - TSS region transcription start site region 22876
Tssr22877 2 22953534 to 22953567 33 - TSS region transcription start site region 22877
Tssr22878 2 22960836 to 22960856 20 - TSS region transcription start site region 22878
Tssr16527 2 22971116 to 22971137 21 + TSS region transcription start site region 16527
Tssr22879 2 22987548 to 22987589 41 - TSS region transcription start site region 22879
Tssr22880 2 22988202 to 22988203 1 - TSS region transcription start site region 22880
Tssr22881 2 22988809 to 22988819 10 - TSS region transcription start site region 22881
Tssr22882 2 22989240 to 22989260 20 - TSS region transcription start site region 22882
2210402A03Rik 2 22991493 to 22993451 1958 unclassified gene RIKEN cDNA 2210402A03 gene
Gm13357 2 23019131 to 23019667 536 - pseudogene predicted gene 13357
Tssr22883 2 23021626 to 23021629 3 - TSS region transcription start site region 22883
Tssr22884 2 23026086 to 23026093 7 - TSS region transcription start site region 22884
Tssr22885 2 23034989 to 23034994 5 - TSS region transcription start site region 22885
Tssr22886 2 23036145 to 23036159 14 - TSS region transcription start site region 22886
Tssr16528 2 23039290 to 23039324 34 + TSS region transcription start site region 16528
Cpgi11273 2 23039308 to 23040227 919 CpG island CpG island 11273
Tssr22887 2 23040092 to 23040127 35 - TSS region transcription start site region 22887
Tssr22888 2 23040138 to 23040174 36 - TSS region transcription start site region 22888
Tssr22889 2 23040177 to 23040201 24 - TSS region transcription start site region 22889
Acbd5 2 23067689 to 23114513 46824 + protein coding gene acyl-Coenzyme A binding domain containing 5
Tssr22890 2 23068016 to 23068058 42 - TSS region transcription start site region 22890
Cpgi11274 2 23068039 to 23069625 1586 CpG island CpG island 11274
Tssr16529 2 23068217 to 23068241 24 + TSS region transcription start site region 16529
Tssr16530 2 23068261 to 23068284 23 + TSS region transcription start site region 16530
Tssr16531 2 23069057 to 23069089 32 + TSS region transcription start site region 16531
Tssr16532 2 23069117 to 23069144 27 + TSS region transcription start site region 16532
Tssr16533 2 23069149 to 23069169 20 + TSS region transcription start site region 16533
Tssr16534 2 23069188 to 23069208 20 + TSS region transcription start site region 16534
Tssr16535 2 23069210 to 23069252 42 + TSS region transcription start site region 16535
Tssr22891 2 23069271 to 23069283 12 - TSS region transcription start site region 22891
Tssr16536 2 23069413 to 23069424 11 + TSS region transcription start site region 16536
Tssr16537 2 23069441 to 23069455 14 + TSS region transcription start site region 16537
Tssr16538 2 23098089 to 23098093 4 + TSS region transcription start site region 16538
D2Mit465 2 23109782 to 23109908 126 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 465
Mastl 2 23116539 to 23156024 39485 - protein coding gene microtubule associated serine/threonine kinase-like
Tssr425 2 23138478 to 23138481 3 + TSS region transcription start site region 425
Tssr16539 2 23155509 to 23155530 21 + TSS region transcription start site region 16539
Cpgi11275 2 23155539 to 23156865 1326 CpG island CpG island 11275
Tssr22892 2 23155864 to 23155925 61 - TSS region transcription start site region 22892
Tssr16540 2 23155954 to 23155980 26 + TSS region transcription start site region 16540
Tssr16541 2 23156013 to 23156023 10 + TSS region transcription start site region 16541
Tssr16542 2 23156173 to 23156188 15 + TSS region transcription start site region 16542
Yme1l1 2 23156369 to 23199260 42891 + protein coding gene YME1-like 1 (S. cerevisiae)
Tssr16543 2 23156508 to 23156527 19 + TSS region transcription start site region 16543
Tssr16544 2 23187791 to 23187804 13 + TSS region transcription start site region 16544
Tssr16545 2 23191006 to 23191024 18 + TSS region transcription start site region 16545
Tssr16546 2 23196451 to 23196463 12 + TSS region transcription start site region 16546
Tssr16547 2 23197391 to 23197395 4 + TSS region transcription start site region 16547
Tssr16548 2 23197812 to 23197829 17 + TSS region transcription start site region 16548
Tssr16549 2 23201936 to 23201942 6 + TSS region transcription start site region 16549
Gm13423 2 23202033 to 23202910 877 + pseudogene predicted gene 13423
Tssr16550 2 23207458 to 23207465 7 + TSS region transcription start site region 16550
Tssr16551 2 23207470 to 23207493 23 + TSS region transcription start site region 16551
4931423N10Rik 2 23207476 to 23267129 59653 + protein coding gene RIKEN cDNA 4931423N10 gene
Cpgi11276 2 23234215 to 23234731 516 CpG island CpG island 11276
Gm13422 2 23235236 to 23235739 503 + pseudogene predicted gene 13422
Tssr426 2 23247283 to 23247285 2 + TSS region transcription start site region 426
Tssr16552 2 23259986 to 23259990 4 + TSS region transcription start site region 16552
Cpgi11277 2 23321036 to 23321584 548 CpG island CpG island 11277
Nxph2 2 23321246 to 23401973 80727 + protein coding gene neurexophilin 2
Gm34769 2 23353095 to 23367102 14007 - lncRNA gene predicted gene, 34769
A330106F07Rik 2 23492927 to 23494447 1520 unclassified gene RIKEN cDNA A330106F07 gene
Gm38309 2 23492931 to 23494448 1517 + unclassified gene predicted gene, 38309
Tssr22893 2 23496396 to 23496400 4 - TSS region transcription start site region 22893
Spopl 2 23506220 to 23572106 65886 - protein coding gene speckle-type POZ protein-like
Gm13331 2 23508860 to 23509307 447 + pseudogene predicted gene 13331
Tssr22894 2 23521985 to 23522000 15 - TSS region transcription start site region 22894
Tssr22895 2 23524068 to 23524079 11 - TSS region transcription start site region 22895
Cpgi11278 2 23571506 to 23572170 664 CpG island CpG island 11278
Tssr22896 2 23572038 to 23572112 74 - TSS region transcription start site region 22896
Mnctp2 2 23572688 to 23572688 0 QTL percent monocytes 2