Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:22306658-23026752

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myo3a 2 22227503 to 22618252 390749 + protein coding gene myosin IIIA
Cpgi11266 2 22338450 to 22338852 402 CpG island CpG island 11266
Gm13342 2 22410525 to 22410731 206 - pseudogene predicted gene 13342
Tssr22854 2 22416716 to 22416725 9 - TSS region transcription start site region 22854
Gm13341 2 22587291 to 22587962 671 - pseudogene predicted gene 13341
Gm13340 2 22588103 to 22589647 1544 - pseudogene predicted gene 13340
Cpgi11267 2 22588552 to 22589766 1214 CpG island CpG island 11267
Tssr16476 2 22588981 to 22589011 30 + TSS region transcription start site region 16476
Tssr16477 2 22589031 to 22589043 12 + TSS region transcription start site region 16477
Tssr22855 2 22589044 to 22589087 43 - TSS region transcription start site region 22855
Tssr423 2 22589150 to 22589159 9 + TSS region transcription start site region 423
Tssr22856 2 22589424 to 22589449 25 - TSS region transcription start site region 22856
Gm13339 2 22590024 to 22590533 509 - pseudogene predicted gene 13339
Tssr22857 2 22590214 to 22590215 1 - TSS region transcription start site region 22857
Tssr22858 2 22590259 to 22590275 16 - TSS region transcription start site region 22858
Tssr22859 2 22590297 to 22590305 8 - TSS region transcription start site region 22859
Tssr16478 2 22621849 to 22621874 25 + TSS region transcription start site region 16478
Cpgi11268 2 22621995 to 22622767 772 CpG island CpG island 11268
Tssr16479 2 22622013 to 22622024 11 + TSS region transcription start site region 16479
Tssr16480 2 22622128 to 22622144 16 + TSS region transcription start site region 16480
Tssr16481 2 22622183 to 22622200 17 + TSS region transcription start site region 16481
Gad2 2 22622205 to 22693874 71669 + protein coding gene glutamic acid decarboxylase 2
Tssr16482 2 22622248 to 22622260 12 + TSS region transcription start site region 16482
Tssr16483 2 22622277 to 22622303 26 + TSS region transcription start site region 16483
Tssr16484 2 22622347 to 22622366 19 + TSS region transcription start site region 16484
Tssr16485 2 22622384 to 22622397 13 + TSS region transcription start site region 16485
Tssr16486 2 22622419 to 22622430 11 + TSS region transcription start site region 16486
Tssr16487 2 22622446 to 22622461 15 + TSS region transcription start site region 16487
Tssr16488 2 22622474 to 22622487 13 + TSS region transcription start site region 16488
Tssr16489 2 22622493 to 22622518 25 + TSS region transcription start site region 16489
Tssr16490 2 22622531 to 22622592 61 + TSS region transcription start site region 16490
Tssr16491 2 22622613 to 22622637 24 + TSS region transcription start site region 16491
Tssr16492 2 22622642 to 22622653 11 + TSS region transcription start site region 16492
Cpgi11269 2 22623073 to 22624286 1213 CpG island CpG island 11269
Mir3967 2 22654283 to 22654350 67 + miRNA gene microRNA 3967
Gm23636 2 22666658 to 22666752 94 + miRNA gene predicted gene, 23636
Gm13338 2 22713511 to 22713871 360 + pseudogene predicted gene 13338
Tssr22860 2 22739877 to 22739890 13 - TSS region transcription start site region 22860
Cpgi11270 2 22744412 to 22745127 715 CpG island CpG island 11270
Tssr22861 2 22744573 to 22744595 22 - TSS region transcription start site region 22861
Tssr22862 2 22744605 to 22744621 16 - TSS region transcription start site region 22862
Tssr22863 2 22744764 to 22744786 22 - TSS region transcription start site region 22863
Tssr22864 2 22744902 to 22744932 30 - TSS region transcription start site region 22864
Tssr22865 2 22744975 to 22745020 45 - TSS region transcription start site region 22865
Tssr22866 2 22745041 to 22745087 46 - TSS region transcription start site region 22866
Tssr22867 2 22745115 to 22745139 24 - TSS region transcription start site region 22867
Tssr22868 2 22745293 to 22745327 34 - TSS region transcription start site region 22868
Tssr16493 2 22755971 to 22755981 10 + TSS region transcription start site region 16493
1700092C17Rik 2 22755984 to 22762273 6289 + lincRNA gene RIKEN cDNA 1700092C17 gene
Tssr16494 2 22755984 to 22755993 9 + TSS region transcription start site region 16494
Tssr22869 2 22761317 to 22761334 17 - TSS region transcription start site region 22869
Gm13356 2 22762744 to 22763078 334 - pseudogene predicted gene 13356
Tssr16495 2 22773944 to 22773955 11 + TSS region transcription start site region 16495
Tssr16496 2 22773970 to 22773986 16 + TSS region transcription start site region 16496
Tssr16497 2 22774019 to 22774042 23 + TSS region transcription start site region 16497
Tssr16498 2 22774051 to 22774072 21 + TSS region transcription start site region 16498
Tssr16499 2 22774081 to 22774096 15 + TSS region transcription start site region 16499
Apbb1ip 2 22774094 to 22875653 101559 + protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
Cpgi11271 2 22774196 to 22774640 444 CpG island CpG island 11271
Tssr16500 2 22774282 to 22774298 16 + TSS region transcription start site region 16500
Tssr424 2 22774292 to 22774333 41 - TSS region transcription start site region 424
Tssr16501 2 22774317 to 22774337 20 + TSS region transcription start site region 16501
Tssr16502 2 22774338 to 22774370 32 + TSS region transcription start site region 16502
Tssr16503 2 22774373 to 22774424 51 + TSS region transcription start site region 16503
Tssr16504 2 22774432 to 22774472 40 + TSS region transcription start site region 16504
Tssr16505 2 22774474 to 22774481 7 + TSS region transcription start site region 16505
Tssr22870 2 22775265 to 22775279 14 - TSS region transcription start site region 22870
Tssr16506 2 22779532 to 22779605 73 + TSS region transcription start site region 16506
Tssr16507 2 22779916 to 22779934 18 + TSS region transcription start site region 16507
Tssr16508 2 22785699 to 22785701 2 + TSS region transcription start site region 16508
Tssr16509 2 22799611 to 22799645 34 + TSS region transcription start site region 16509
Tssr16510 2 22804627 to 22804639 12 + TSS region transcription start site region 16510
Tssr16511 2 22804643 to 22804656 13 + TSS region transcription start site region 16511
Tssr16512 2 22804745 to 22804768 23 + TSS region transcription start site region 16512
Tssr16513 2 22816518 to 22816536 18 + TSS region transcription start site region 16513
Tssr16514 2 22823429 to 22823441 12 + TSS region transcription start site region 16514
Tssr16515 2 22823505 to 22823538 33 + TSS region transcription start site region 16515
Tssr16516 2 22834302 to 22834342 40 + TSS region transcription start site region 16516
Tssr16517 2 22853143 to 22853161 18 + TSS region transcription start site region 16517
Tssr16518 2 22855175 to 22855204 29 + TSS region transcription start site region 16518
Tssr16519 2 22860741 to 22860749 8 + TSS region transcription start site region 16519
Tssr16520 2 22869377 to 22869381 4 + TSS region transcription start site region 16520
Tssr16521 2 22874840 to 22874852 12 + TSS region transcription start site region 16521
Tssr22871 2 22874980 to 22875004 24 - TSS region transcription start site region 22871
Tssr22872 2 22875028 to 22875048 20 - TSS region transcription start site region 22872
Cpgi11272 2 22895218 to 22896204 986 CpG island CpG island 11272
A130006I12Rik 2 22895321 to 22895736 415 - pseudogene RIKEN cDNA A130006I12 gene
Tssr16522 2 22895482 to 22895485 3 + TSS region transcription start site region 16522
Tssr22873 2 22895498 to 22895559 61 - TSS region transcription start site region 22873
Pdss1 2 22895522 to 22940266 44744 + protein coding gene prenyl (solanesyl) diphosphate synthase, subunit 1
Tssr16523 2 22895559 to 22895568 9 + TSS region transcription start site region 16523
Tssr16524 2 22895583 to 22895629 46 + TSS region transcription start site region 16524
Gm25544 2 22902388 to 22902507 119 + snoRNA gene predicted gene, 25544
Gm14441 2 22913293 to 22913832 539 - pseudogene predicted gene 14441
Tssr22874 2 22913876 to 22913883 7 - TSS region transcription start site region 22874
Tssr16525 2 22914663 to 22914682 19 + TSS region transcription start site region 16525
Tssr16526 2 22928557 to 22928562 5 + TSS region transcription start site region 16526
Abi1 2 22940073 to 23040241 100168 - protein coding gene abl-interactor 1
Tssr22875 2 22941899 to 22941949 50 - TSS region transcription start site region 22875
Tssr22876 2 22950688 to 22950707 19 - TSS region transcription start site region 22876
Tssr22877 2 22953534 to 22953567 33 - TSS region transcription start site region 22877
Tssr22878 2 22960836 to 22960856 20 - TSS region transcription start site region 22878
Tssr16527 2 22971116 to 22971137 21 + TSS region transcription start site region 16527
Tssr22879 2 22987548 to 22987589 41 - TSS region transcription start site region 22879
Tssr22880 2 22988202 to 22988203 1 - TSS region transcription start site region 22880
Tssr22881 2 22988809 to 22988819 10 - TSS region transcription start site region 22881
Tssr22882 2 22989240 to 22989260 20 - TSS region transcription start site region 22882
2210402A03Rik 2 22991493 to 22993451 1958 unclassified gene RIKEN cDNA 2210402A03 gene
Gm13357 2 23019131 to 23019667 536 - pseudogene predicted gene 13357
Tssr22883 2 23021626 to 23021629 3 - TSS region transcription start site region 22883
Tssr22884 2 23026086 to 23026093 7 - TSS region transcription start site region 22884