Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:2117608-4727633

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209 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit175 2 3059566 to 3059678 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 175
Gm37392 2 3065573 to 3066088 515 - pseudogene predicted gene, 37392
Gm27306 2 3075107 to 3075213 106 + miRNA gene predicted gene, 27306
Tssr15878 2 3114199 to 3114206 7 + TSS region transcription start site region 15878
Tssr15879 2 3114220 to 3114225 5 + TSS region transcription start site region 15879
Fam171a1 2 3114224 to 3227806 113582 + protein coding gene family with sequence similarity 171, member A1
Cpgi11148 2 3118039 to 3119233 1194 CpG island CpG island 11148
Tssr15880 2 3118335 to 3118392 57 + TSS region transcription start site region 15880
Tssr15881 2 3118407 to 3118476 69 + TSS region transcription start site region 15881
Tssr15882 2 3118523 to 3118542 19 + TSS region transcription start site region 15882
Tssr15883 2 3119467 to 3119473 6 + TSS region transcription start site region 15883
1700057A11Rik 2 3148802 to 3149230 428 unclassified gene RIKEN cDNA 1700057A11 gene
D2Mit312 2 3235114 to 3235237 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 312
Cpgi11149 2 3283407 to 3285188 1781 CpG island CpG island 11149
Tssr15884 2 3284169 to 3284182 13 + TSS region transcription start site region 15884
Tssr15885 2 3284202 to 3284220 18 + TSS region transcription start site region 15885
Nmt2 2 3284212 to 3328877 44665 + protein coding gene N-myristoyltransferase 2
Tssr15886 2 3284232 to 3284290 58 + TSS region transcription start site region 15886
Gm22005 2 3291378 to 3291518 140 - snRNA gene predicted gene, 22005
Tssr22354 2 3291515 to 3291517 2 - TSS region transcription start site region 22354
Tssr15887 2 3327292 to 3327296 4 + TSS region transcription start site region 15887
Rpp38 2 3328949 to 3332643 3694 - protein coding gene ribonuclease P/MRP 38 subunit
Cpgi11150 2 3332179 to 3332903 724 CpG island CpG island 11150
Tssr22355 2 3332423 to 3332441 18 - TSS region transcription start site region 22355
Tssr22356 2 3332447 to 3332460 13 - TSS region transcription start site region 22356
Tssr22357 2 3332566 to 3332650 84 - TSS region transcription start site region 22357
Tssr15888 2 3333158 to 3333163 5 + TSS region transcription start site region 15888
Tssr22358 2 3335982 to 3336012 30 - TSS region transcription start site region 22358
Tssr15889 2 3336159 to 3336174 15 + TSS region transcription start site region 15889
Acbd7 2 3336168 to 3340993 4825 + protein coding gene acyl-Coenzyme A binding domain containing 7
Olah 2 3341987 to 3366569 24582 - protein coding gene oleoyl-ACP hydrolase
Gm37525 2 3351134 to 3354004 2870 - sense intronic lncRNA gene predicted gene, 37525
Tssr22359 2 3366568 to 3366571 3 - TSS region transcription start site region 22359
Tssr22360 2 3366574 to 3366587 13 - TSS region transcription start site region 22360
Tssr22361 2 3366599 to 3366613 14 - TSS region transcription start site region 22361
Gm39750 2 3403916 to 3408537 4621 - lncRNA gene predicted gene, 39750
Meig1 2 3409043 to 3422648 13605 - protein coding gene meiosis expressed gene 1
Tssr387 2 3411984 to 3412003 19 - TSS region transcription start site region 387
Cpgi11151 2 3418652 to 3419414 762 CpG island CpG island 11151
Tssr22362 2 3419024 to 3419061 37 - TSS region transcription start site region 22362
Tssr22363 2 3419066 to 3419073 7 - TSS region transcription start site region 22363
Tssr22364 2 3422561 to 3422573 12 - TSS region transcription start site region 22364
Tssr22365 2 3422576 to 3422600 24 - TSS region transcription start site region 22365
Tssr22366 2 3422608 to 3422633 25 - TSS region transcription start site region 22366
Tssr22367 2 3423987 to 3424024 37 - TSS region transcription start site region 22367
Cpgi11152 2 3424041 to 3424414 373 CpG island CpG island 11152
Tssr15890 2 3424123 to 3424207 84 + TSS region transcription start site region 15890
Dclre1c 2 3424131 to 3464130 39999 + protein coding gene DNA cross-link repair 1C
Tssr15891 2 3439309 to 3439330 21 + TSS region transcription start site region 15891
Tssr15892 2 3441032 to 3441044 12 + TSS region transcription start site region 15892
Tssr15893 2 3442473 to 3442510 37 + TSS region transcription start site region 15893
Tssr15894 2 3453700 to 3453716 16 + TSS region transcription start site region 15894
Suv39h2 2 3455815 to 3474986 19171 - protein coding gene suppressor of variegation 3-9 2
Tssr15895 2 3461602 to 3461649 47 + TSS region transcription start site region 15895
Tssr15896 2 3468588 to 3468613 25 + TSS region transcription start site region 15896
Gm13184 2 3468613 to 3474546 5933 + antisense lncRNA gene predicted gene 13184
Cpgi11153 2 3474284 to 3475366 1082 CpG island CpG island 11153
Tssr22368 2 3474954 to 3474975 21 - TSS region transcription start site region 22368
Tssr22369 2 3474989 to 3475004 15 - TSS region transcription start site region 22369
Tssr22370 2 3475027 to 3475086 59 - TSS region transcription start site region 22370
Tssr15897 2 3475172 to 3475186 14 + TSS region transcription start site region 15897
Hspa14 2 3488850 to 3512814 23964 - protein coding gene heat shock protein 14
Tssr22371 2 3498103 to 3498108 5 - TSS region transcription start site region 22371
Gm45902 2 3504527 to 3512790 8263 - protein coding gene predicted gene 45902
Tssr22372 2 3511212 to 3511243 31 - TSS region transcription start site region 22372
Cpgi11154 2 3512161 to 3513402 1241 CpG island CpG island 11154
Tssr22373 2 3512746 to 3512782 36 - TSS region transcription start site region 22373
Tssr22374 2 3512929 to 3512970 41 - TSS region transcription start site region 22374
Cdnf 2 3513030 to 3526376 13346 + protein coding gene cerebral dopamine neurotrophic factor
Tssr15898 2 3513035 to 3513074 39 + TSS region transcription start site region 15898
Tssr15899 2 3513092 to 3513127 35 + TSS region transcription start site region 15899
Tssr22375 2 3517790 to 3517796 6 - TSS region transcription start site region 22375
Gm13186 2 3531285 to 3531600 315 + pseudogene predicted gene 13186
Gm13182 2 3550757 to 3551068 311 + pseudogene predicted gene 13182
Tssr15900 2 3636894 to 3636901 7 + TSS region transcription start site region 15900
Tssr22376 2 3649271 to 3649286 15 - TSS region transcription start site region 22376
Tssr15901 2 3649507 to 3649517 10 + TSS region transcription start site region 15901
Tssr15902 2 3664530 to 3664538 8 + TSS region transcription start site region 15902
Gm13183 2 3679802 to 3680590 788 - pseudogene predicted gene 13183
Tssr15903 2 3686322 to 3686356 34 + TSS region transcription start site region 15903
Gm13181 2 3686362 to 3687430 1068 + pseudogene predicted gene 13181
Tssr15904 2 3704787 to 3704798 11 + TSS region transcription start site region 15904
Fam107b 2 3704812 to 3782142 77330 + protein coding gene family with sequence similarity 107, member B
Cpgi11155 2 3713202 to 3714203 1001 CpG island CpG island 11155
Tssr22377 2 3713315 to 3713350 35 - TSS region transcription start site region 22377
Tssr15905 2 3713440 to 3713443 3 + TSS region transcription start site region 15905
Tssr15906 2 3713449 to 3713474 25 + TSS region transcription start site region 15906
Tssr15907 2 3713479 to 3713500 21 + TSS region transcription start site region 15907
Tssr15908 2 3713517 to 3713528 11 + TSS region transcription start site region 15908
Tssr22378 2 3715579 to 3715598 19 - TSS region transcription start site region 22378
Tssr22379 2 3718095 to 3718108 13 - TSS region transcription start site region 22379
Tssr15909 2 3723197 to 3723202 5 + TSS region transcription start site region 15909
Tssr15910 2 3723752 to 3723798 46 + TSS region transcription start site region 15910
Tssr22380 2 3726720 to 3726748 28 - TSS region transcription start site region 22380
Tssr22381 2 3726787 to 3726808 21 - TSS region transcription start site region 22381
Tssr15911 2 3727174 to 3727185 11 + TSS region transcription start site region 15911
Tssr15912 2 3730957 to 3730996 39 + TSS region transcription start site region 15912
Tssr15913 2 3731062 to 3731067 5 + TSS region transcription start site region 15913
Tssr22382 2 3731318 to 3731327 9 - TSS region transcription start site region 22382
Tssr15914 2 3733067 to 3733075 8 + TSS region transcription start site region 15914
Tssr15915 2 3749249 to 3749260 11 + TSS region transcription start site region 15915
Tssr15916 2 3749273 to 3749290 17 + TSS region transcription start site region 15916
Tssr15917 2 3749302 to 3749320 18 + TSS region transcription start site region 15917
Tssr15918 2 3749326 to 3749364 38 + TSS region transcription start site region 15918
Tssr15919 2 3749948 to 3749952 4 + TSS region transcription start site region 15919
Gm13185 2 3752986 to 3755177 2191 - antisense lncRNA gene predicted gene 13185
Tssr15920 2 3770639 to 3770664 25 + TSS region transcription start site region 15920
Tssr15921 2 3770673 to 3770682 9 + TSS region transcription start site region 15921
D2Mit356b 2 3778683 to 3778795 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356b
D2Mit356a 2 3778683 to 3778728 45 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356a
Tssr388 2 3779887 to 3779917 30 + TSS region transcription start site region 388
Tssr15922 2 3779922 to 3779938 16 + TSS region transcription start site region 15922
Tssr15923 2 3780090 to 3780114 24 + TSS region transcription start site region 15923
Tssr15924 2 3780923 to 3780929 6 + TSS region transcription start site region 15924
Tssr389 2 3781828 to 3781832 4 + TSS region transcription start site region 389
Gm36031 2 3807845 to 3824328 16483 + lncRNA gene predicted gene, 36031
Tssr15925 2 3810195 to 3810210 15 + TSS region transcription start site region 15925
Gm13180 2 3855030 to 3877575 22545 + lincRNA gene predicted gene 13180
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
D2Mit1 2 3886089 to 3886211 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1
Gm13191 2 3925808 to 3929139 3331 - lincRNA gene predicted gene 13191
D2Mit115 2 3928829 to 3928983 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 115
D2Mit231 2 3932099 to 3932248 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 231
Tssr390 2 4017685 to 4017696 11 + TSS region transcription start site region 390
Tssr15926 2 4017706 to 4017722 16 + TSS region transcription start site region 15926
Frmd4a 2 4017717 to 4614043 596326 + protein coding gene FERM domain containing 4A
Tssr15927 2 4017727 to 4017745 18 + TSS region transcription start site region 15927
Tssr15928 2 4017757 to 4017768 11 + TSS region transcription start site region 15928
Gm2639 2 4051263 to 4052559 1296 - pseudogene predicted gene 2639
Tssr15929 2 4057908 to 4057919 11 + TSS region transcription start site region 15929
Tssr15930 2 4058104 to 4058134 30 + TSS region transcription start site region 15930
Gm13188 2 4081855 to 4082418 563 - pseudogene predicted gene 13188
Gm10862 2 4091140 to 4094489 3349 + sense intronic lncRNA gene predicted gene 10862
Gm38085 2 4103877 to 4106938 3061 + sense intronic lncRNA gene predicted gene, 38085
Tssr15931 2 4131659 to 4131664 5 + TSS region transcription start site region 15931
1700080N15Rik 2 4132065 to 4141141 9076 - antisense lncRNA gene RIKEN cDNA 1700080N15 gene
Gm13189 2 4137774 to 4144102 6328 + lincRNA gene predicted gene 13189
Gm37814 2 4138984 to 4142627 3643 + sense intronic lncRNA gene predicted gene, 37814
Tssr22383 2 4141128 to 4141146 18 - TSS region transcription start site region 22383
Tssr15932 2 4141270 to 4141281 11 + TSS region transcription start site region 15932
Tssr15933 2 4152588 to 4152610 22 + TSS region transcription start site region 15933
Tssr15934 2 4152615 to 4152644 29 + TSS region transcription start site region 15934
Tssr15935 2 4165964 to 4165969 5 + TSS region transcription start site region 15935
Gm37107 2 4178110 to 4180661 2551 + sense intronic lncRNA gene predicted gene, 37107
Gm38348 2 4217081 to 4219353 2272 + sense intronic lncRNA gene predicted gene, 38348
Tssr15936 2 4218167 to 4218170 3 + TSS region transcription start site region 15936
Gm39752 2 4247426 to 4250592 3166 + lncRNA gene predicted gene, 39752
Tssr15937 2 4285236 to 4285253 17 + TSS region transcription start site region 15937
Gm13187 2 4289345 to 4301144 11799 - lncRNA gene predicted gene 13187
Tssr15938 2 4300462 to 4300522 60 + TSS region transcription start site region 15938
Tssr15939 2 4300537 to 4300568 31 + TSS region transcription start site region 15939
Tssr15940 2 4300590 to 4300599 9 + TSS region transcription start site region 15940
Tssr15941 2 4300604 to 4300617 13 + TSS region transcription start site region 15941
Tssr15942 2 4300623 to 4300635 12 + TSS region transcription start site region 15942
Tssr15943 2 4300727 to 4300741 14 + TSS region transcription start site region 15943
Tssr15944 2 4300749 to 4300765 16 + TSS region transcription start site region 15944
Tssr15945 2 4300773 to 4300797 24 + TSS region transcription start site region 15945
Tssr15946 2 4300877 to 4300904 27 + TSS region transcription start site region 15946
Tssr15947 2 4300908 to 4300931 23 + TSS region transcription start site region 15947
Gm36988 2 4316479 to 4318886 2407 + sense intronic lncRNA gene predicted gene, 36988
Gm23691 2 4380961 to 4381067 106 - snRNA gene predicted gene, 23691
Tssr15948 2 4389455 to 4389467 12 + TSS region transcription start site region 15948
Tssr15949 2 4389594 to 4389602 8 + TSS region transcription start site region 15949
Tssr15950 2 4389615 to 4389639 24 + TSS region transcription start site region 15950
Tssr15951 2 4399245 to 4399249 4 + TSS region transcription start site region 15951
Cpgi11156 2 4400785 to 4402037 1252 CpG island CpG island 11156
Tssr15952 2 4400798 to 4400828 30 + TSS region transcription start site region 15952
Tssr15953 2 4400958 to 4400969 11 + TSS region transcription start site region 15953
Tssr15954 2 4401096 to 4401120 24 + TSS region transcription start site region 15954
Tssr15955 2 4401160 to 4401172 12 + TSS region transcription start site region 15955
Tssr15956 2 4401291 to 4401332 41 + TSS region transcription start site region 15956
Tssr15957 2 4401393 to 4401500 107 + TSS region transcription start site region 15957
Tssr15958 2 4401505 to 4401524 19 + TSS region transcription start site region 15958
Tssr15959 2 4401539 to 4401556 17 + TSS region transcription start site region 15959
Tssr15960 2 4416287 to 4416319 32 + TSS region transcription start site region 15960
Tssr15961 2 4431946 to 4431997 51 + TSS region transcription start site region 15961
Gm13175 2 4458434 to 4466670 8236 - antisense lncRNA gene predicted gene 13175
D2Mit425 2 4459607 to 4459699 92 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 425
Gm39751 2 4473223 to 4510570 37347 - lncRNA gene predicted gene, 39751
Cpgi11157 2 4559540 to 4560044 504 CpG island CpG island 11157
Tssr15962 2 4559602 to 4559629 27 + TSS region transcription start site region 15962
Tssr15963 2 4559645 to 4559656 11 + TSS region transcription start site region 15963
Tssr22384 2 4559671 to 4559694 23 - TSS region transcription start site region 22384
Tssr15964 2 4559701 to 4559706 5 + TSS region transcription start site region 15964
Tssr15965 2 4559742 to 4559755 13 + TSS region transcription start site region 15965
Tssr15966 2 4559759 to 4559810 51 + TSS region transcription start site region 15966
Tssr15967 2 4559878 to 4559892 14 + TSS region transcription start site region 15967
Tssr15968 2 4559913 to 4559930 17 + TSS region transcription start site region 15968
Tssr15969 2 4559931 to 4559943 12 + TSS region transcription start site region 15969
Tssr15970 2 4560050 to 4560063 13 + TSS region transcription start site region 15970
Tssr15971 2 4560118 to 4560148 30 + TSS region transcription start site region 15971
D2Mit426 2 4561924 to 4562098 174 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 426
Gm13179 2 4586024 to 4587287 1263 - antisense lncRNA gene predicted gene 13179
Tssr22385 2 4593535 to 4593570 35 - TSS region transcription start site region 22385
Tssr15972 2 4597266 to 4597291 25 + TSS region transcription start site region 15972
D2Mit355 2 4598040 to 4598186 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 355
Cpgi11158 2 4603390 to 4604315 925 CpG island CpG island 11158
Prpf18 2 4622058 to 4652113 30055 - protein coding gene pre-mRNA processing factor 18
Cpgi11159 2 4651579 to 4652248 669 CpG island CpG island 11159
Tssr22386 2 4652060 to 4652077 17 - TSS region transcription start site region 22386